Moc11g26840 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g26840
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr11: 19726616 .. 19728150 (+)
RNA-Seq ExpressionMoc11g26840
SyntenyMoc11g26840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGACCTGATCTCCGACACTGGTAACTGCTTGTCGGAAGGGTTGTCAGATCCTCAACCTAAAAATAGAGGGTACCATTTCTAAAGACAGGTATCGCATTCTATCTCGAACTTGATATTGAGTCCGAACTGGTTACTGACTTGAGCGTCGAAGAGTTCGCCCTCTTGTGTAGGTCATCTCTAAGTGAGACGAGTCAGCTATCCCCACGTGTTCGACCTCCTCTAGGTCATATCACCTTCAGTTCTACGCATAAATATTGTGGCGTTGTCTGTGGGGAAGCACATTCAAAGTCATTCCTACTACTGAGAACTAAAATGGCACCACTAGATATCTCCACTGGCTCGACCCATCCGAGTCAGTGTGTCGATAATTGTTGAGAAAGTAAACAAATTGCTTAAACCTAAATATATAAAAGAAATTTTGTATTCCGACTGGCTCTCTAACATAGTCTTAGTTAAAAAATCCAATGGGAAGTGGAGAATGTGTGTGGATTTTATCAATTTAAACAAGGCATGCCTTAAAGACTGCTTCCACTTCCTCGGATCGACCAGCTTGTAGACGCCAAGGTCGGGCGCGAGCTGCTTACGTGTATGGACGTTTACTCTGGATAAACCCAGATAAAGATGCACGAGCCTGATCAAGTCCACACCTCCTTCATAACCGACCAAGGCTTGTATTATTACATGTCATTTGGCCTAAATAATGCAAGTGCAACCTATCAAAGGATGGTAAACGAAATGTTTGCCAACTAGATCGGACGCAACATGGAGGTGTATGTGGATGATACGCATGTAAAGAGCAAACAGTCAATATCGCATCTCGCCGTCGTAACAGTGACGTTCGAGGTGCTGCACAAATATCGAATGAAACTTAATCCAGCAAATGCACTTTCGGCGTCTCTTCTAGGAAATTTTTTGGCTTTATGGTGAATAACCGTGCAATAGAGGCCAATCCAGAAAAGATCCGAGCTGTACTCGAGATGCAAGCACCGAGAACTCTAAAGCAGTCACAGTGCTTGAATGGGAGGATTGCAGCCCTAAACAGGTTCATCTCCAGGTTAATCGATAAGTGTCTGCCTTTCTTTAGGGTCTTGCGTAAGAAAGGTCCATTTGAATGGACTCCAGAATGCCAAGAGGCTTTTGAGCAACACAAAGCATACCTTGGCTCTGCTCCTTTGCTAGCCAAATTGGTACCTAGCAACTCATAGTGAATCAAATTAAGAAAGAATACTAGGCGAAGGACTCCACTTGAAGAAGTACCTTAGCAAGGTCCTCGCACAACTCGCACAATTCAATTGCTACGGCATCGATCAAATACCCAGGTCCGAGAACTCTAATGCAGATGCCTTAGCCAAGTTGGCCTCCGCGTACGAGACTGACCTGGCCAAGTGGATCCCATTTGAAATTCTAGACACACCTTTCTTTTTGGAGGAAGATATGATGGAGATTGATCTTCAACCCCCATCTTGGATGGATCCGATTAAGGAGTACCCTCTCAGGCAGCACTTCTGTGGATTCGAAAGAAGCCAATAA

mRNA sequence

ATGTCTGACCTGATCTCCGACACTGGTATCGCATTCTATCTCGAACTTGATATTGAGTCCGAACTGGTTACTGACTTGAGCGTCGAAGAGTTCGCCCTCTTGTGTAGGTCATCTCTAAGTGAGACGAGTCAGCTATCCCCACGTGTTCGACCTCCTCTAGGCGAAGGACTCCACTTGAAGAAGTACCTTAGCAAGGTCCTCGCACAACTCGCACAATTCAATTGCTACGGCATCGATCAAATACCCAGGTCCGAGAACTCTAATGCAGATGCCTTAGCCAAGTTGGCCTCCGCGTACGAGACTGACCTGGCCAAGTGGATCCCATTTGAAATTCTAGACACACCTTTCTTTTTGGAGGAAGATATGATGGAGATTGATCTTCAACCCCCATCTTGGATGGATCCGATTAAGGAGTACCCTCTCAGGCAGCACTTCTGTGGATTCGAAAGAAGCCAATAA

Coding sequence (CDS)

ATGTCTGACCTGATCTCCGACACTGGTATCGCATTCTATCTCGAACTTGATATTGAGTCCGAACTGGTTACTGACTTGAGCGTCGAAGAGTTCGCCCTCTTGTGTAGGTCATCTCTAAGTGAGACGAGTCAGCTATCCCCACGTGTTCGACCTCCTCTAGGCGAAGGACTCCACTTGAAGAAGTACCTTAGCAAGGTCCTCGCACAACTCGCACAATTCAATTGCTACGGCATCGATCAAATACCCAGGTCCGAGAACTCTAATGCAGATGCCTTAGCCAAGTTGGCCTCCGCGTACGAGACTGACCTGGCCAAGTGGATCCCATTTGAAATTCTAGACACACCTTTCTTTTTGGAGGAAGATATGATGGAGATTGATCTTCAACCCCCATCTTGGATGGATCCGATTAAGGAGTACCCTCTCAGGCAGCACTTCTGTGGATTCGAAAGAAGCCAATAA

Protein sequence

MSDLISDTGIAFYLELDIESELVTDLSVEEFALLCRSSLSETSQLSPRVRPPLGEGLHLKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFLEEDMMEIDLQPPSWMDPIKEYPLRQHFCGFERSQ
Homology
[Close]
BLAST of Moc11g26840 vs. NCBI nr
Match: XP_022150100.1 (uncharacterized protein LOC111018362 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-22
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYLSKV + LAQF  Y + Q+PRSENSNADALAKLASAYETDLA+ +P EILD+P  L
Sbjct: 377 MEKYLSKVRSHLAQFRTYEVSQVPRSENSNADALAKLASAYETDLARSVPVEILDSPSIL 436

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           E D+ME+D   PSWMDPI E+
Sbjct: 437 EPDVMEVDTPSPSWMDPIVEF 457

[Close]
BLAST of Moc11g26840 vs. NCBI nr
Match: XP_022159396.1 (uncharacterized protein LOC111025810 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYLSKV + +AQF  Y + Q+PRSENSNADALAKLASAYETDLA+ +P EILD P  L
Sbjct: 313 MEKYLSKVRSHJAQFGTYEVXQVPRSENSNADALAKLASAYETDLARSVPIEILDNPSIL 372

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           E D+ME+D   PSWMDPI E+
Sbjct: 373 EPDVMEVDTPSPSWMDPIVEF 393

[Close]
BLAST of Moc11g26840 vs. NCBI nr
Match: XP_022143565.1 (uncharacterized protein LOC111013434 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYL KV + LA F  Y I QIPRS+NSN+DALAKLASAYETDLA+ +P EILD P  L
Sbjct: 86  MEKYLGKVRSHLAYFQTYEISQIPRSQNSNSDALAKLASAYETDLARSVPVEILDNPSIL 145

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           E DMMEID  PPSWM+PIK++
Sbjct: 146 EPDMMEIDSHPPSWMEPIKDF 166

[Close]
BLAST of Moc11g26840 vs. NCBI nr
Match: XP_022151715.1 (uncharacterized protein LOC111019628 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 3.9e-22
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYLS+V + LAQF  Y + Q+PRSENSNADALAKLASAYETDLA+ +P EILD P  L
Sbjct: 186 MEKYLSRVRSHLAQFETYEVSQVPRSENSNADALAKLASAYETDLARSVPVEILDNPSIL 245

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           + D+MEID+  PSWMDPI E+
Sbjct: 246 DPDVMEIDIPSPSWMDPIVEF 266

[Close]
BLAST of Moc11g26840 vs. NCBI nr
Match: XP_022153142.1 (uncharacterized protein LOC111020710 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-21
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYLSKV + LAQF  Y + Q+PRSENSNADALAKLASAYETDLA+ +P EILDTP  L
Sbjct: 131 MEKYLSKVRSHLAQFGTYEVSQVPRSENSNADALAKLASAYETDLARSVPVEILDTPSIL 190

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           E D+ME+D    +WMDPI E+
Sbjct: 191 EPDVMEVDTPSLTWMDPIVEF 211

[Close]
BLAST of Moc11g26840 vs. ExPASy TrEMBL
Match: A0A6J1D7J6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018362 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.5e-23
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYLSKV + LAQF  Y + Q+PRSENSNADALAKLASAYETDLA+ +P EILD+P  L
Sbjct: 377 MEKYLSKVRSHLAQFRTYEVSQVPRSENSNADALAKLASAYETDLARSVPVEILDSPSIL 436

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           E D+ME+D   PSWMDPI E+
Sbjct: 437 EPDVMEVDTPSPSWMDPIVEF 457

[Close]
BLAST of Moc11g26840 vs. ExPASy TrEMBL
Match: A0A6J1E3S9 (uncharacterized protein LOC111025810 OS=Momordica charantia OX=3673 GN=LOC111025810 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYLSKV + LAQF  Y + Q+PRSENSNADALAKLASAYETDLA+ +P EILD P  L
Sbjct: 313 MEKYLSKVRSHLAQFGTYEVXQVPRSENSNADALAKLASAYETDLARSVPIEILDNPSIL 372

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           E D+ME+D   PSWMDPI E+
Sbjct: 373 EPDVMEVDTPSPSWMDPIVEF 393

[Close]
BLAST of Moc11g26840 vs. ExPASy TrEMBL
Match: A0A6J1CP53 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013434 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYL KV + LA F  Y I QIPRS+NSN+DALAKLASAYETDLA+ +P EILD P  L
Sbjct: 86  MEKYLGKVRSHLAYFQTYEISQIPRSQNSNSDALAKLASAYETDLARSVPVEILDNPSIL 145

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           E DMMEID  PPSWM+PIK++
Sbjct: 146 EPDMMEIDSHPPSWMEPIKDF 166

[Close]
BLAST of Moc11g26840 vs. ExPASy TrEMBL
Match: A0A6J1DBZ0 (uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019628 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYLS+V + LAQF  Y + Q+PRSENSNADALAKLASAYETDLA+ +P EILD P  L
Sbjct: 186 MEKYLSRVRSHLAQFETYEVSQVPRSENSNADALAKLASAYETDLARSVPVEILDNPSIL 245

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           + D+MEID+  PSWMDPI E+
Sbjct: 246 DPDVMEIDIPSPSWMDPIVEF 266

[Close]
BLAST of Moc11g26840 vs. ExPASy TrEMBL
Match: A0A6J1DI47 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111020710 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 9.4e-22
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 59  LKKYLSKVLAQLAQFNCYGIDQIPRSENSNADALAKLASAYETDLAKWIPFEILDTPFFL 118
           ++KYLSKV + LAQF  Y + Q+PRSENSNADALAKLASAYETDLA+ +P EILDTP  L
Sbjct: 131 MEKYLSKVRSHLAQFGTYEVSQVPRSENSNADALAKLASAYETDLARSVPVEILDTPSIL 190

Query: 119 EEDMMEIDLQPPSWMDPIKEY 140
           E D+ME+D    +WMDPI E+
Sbjct: 191 EPDVMEVDTPSLTWMDPIVEF 211

The following BLAST results are available for this feature:
BLAST of Moc11g26840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150100.11.7e-2267.90uncharacterized protein LOC111018362 [Momordica charantia][more]
XP_022159396.13.0e-2266.67uncharacterized protein LOC111025810 [Momordica charantia][more]
XP_022143565.13.0e-2267.90uncharacterized protein LOC111013434 [Momordica charantia][more]
XP_022151715.13.9e-2266.67uncharacterized protein LOC111019628 [Momordica charantia][more]
XP_022153142.11.9e-2166.67uncharacterized protein LOC111020710 [Momordica charantia][more]
BLAST of Moc11g26840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc11g26840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7J68.5e-2367.90Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018362 PE=4 SV=1[more]
A0A6J1E3S91.1e-2267.90uncharacterized protein LOC111025810 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1CP531.4e-2267.90Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013434 PE=4 SV=1[more]
A0A6J1DBZ01.9e-2266.67uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DI479.4e-2266.67Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111020710 PE=4 SV=1[more]
BLAST of Moc11g26840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g26840.1Moc11g26840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity