Moc11g26390 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g26390
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCACTA en-spm transposon protein
Locationchr11: 19455482 .. 19455852 (+)
RNA-Seq ExpressionMoc11g26390
SyntenyMoc11g26390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATCGGGGTACATACACGCGAACAAGTGGACCTAAAGGTTAACAAGTGGAGTGAGGTCGAACAAATTGAGAAGAGGGCAATTATAACTCAGCTCAAGGTTTGAGATTAATTACTTAATATGTTTTATTATTTTTTATGATGCAACAGTAATAACACTTAAACATATGTTCGATGTTTTTTTTGTTATAGGGTCATTTTGATTTCAACGAATCAGATCGAGTTATGATGAAATTCATCGAGCATGAGATGAGATCGACACATAAGGCGTATATGGCAAAATTGTGCCAACACTACCTGAGTTATCCCACACCTGAGATTGCGCGCAACAATCCTTCGGAGCAGTTGTTGGCAAAACCAGACAATTAG

mRNA sequence

ATGGCGATCGGGGTACATACACGCGAACAAGTGGACCTAAAGGTTAACAAGTGGAGTGAGGTCGAACAAATTGAGAAGAGGGCAATTATAACTCAGCTCAAGGGTCATTTTGATTTCAACGAATCAGATCGAGTTATGATGAAATTCATCGAGCATGAGATGAGATCGACACATAAGGCGTATATGGCAAAATTGTGCCAACACTACCTGAGTTATCCCACACCTGAGATTGCGCGCAACAATCCTTCGGAGCAGTTGTTGGCAAAACCAGACAATTAG

Coding sequence (CDS)

ATGGCGATCGGGGTACATACACGCGAACAAGTGGACCTAAAGGTTAACAAGTGGAGTGAGGTCGAACAAATTGAGAAGAGGGCAATTATAACTCAGCTCAAGGGTCATTTTGATTTCAACGAATCAGATCGAGTTATGATGAAATTCATCGAGCATGAGATGAGATCGACACATAAGGCGTATATGGCAAAATTGTGCCAACACTACCTGAGTTATCCCACACCTGAGATTGCGCGCAACAATCCTTCGGAGCAGTTGTTGGCAAAACCAGACAATTAG

Protein sequence

MAIGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAYMAKLCQHYLSYPTPEIARNNPSEQLLAKPDN
Homology
[Close]
BLAST of Moc11g26390 vs. NCBI nr
Match: KAA0034937.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 6.9e-06
Identity = 29/91 (31.87%), Postives = 52/91 (57.14%), Query Frame = 0 

Query: 2   AIGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAY 61
           AIGV+ R+   ++  KW++V +     + T L+  F F+ +D+ M +F+EH+M +T K +
Sbjct: 201 AIGVYVRKTFSVRCLKWADVGREYTEVVKTDLQRFFVFDFNDQAMNRFVEHQMLNTFKEF 260

Query: 62  MAKLCQHYLSYPTPEIARNNPSEQLLAKPDN 93
                +H+  Y  PE AR NP   L+ + ++
Sbjct: 261 QGDCHRHFKKYSDPEKARANPPNLLVGRDED 291

[Close]
BLAST of Moc11g26390 vs. NCBI nr
Match: XP_022156301.1 (uncharacterized protein LOC111023227 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 0 

Query: 3   IGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAYM 62
           IGV  R  V L    WS+V Q +K +II +L   F  N +D ++ +++EHEM S H  + 
Sbjct: 125 IGVWVRSIVSLNCEHWSDVNQDDKNSIINRLSNQFILNLNDPIVYRYLEHEMSSRHIDFR 184

Query: 63  AKLCQHYLSYPTPEIARNNPSEQLLAKPD 92
            +L +HY+ Y +P+ AR++  + +    D
Sbjct: 185 YRLHKHYMQY-SPKEARHHKHKDVARGED 212

[Close]
BLAST of Moc11g26390 vs. NCBI nr
Match: XP_011469238.1 (PREDICTED: uncharacterized protein LOC101294108 [Fragaria vesca subsp. vesca])

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 31/85 (36.47%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 3   IGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAYM 62
           IG+ TR+   L V +W EV  ++K  +I  L   FDF+ +D V+ KFI+  M  ++  + 
Sbjct: 107 IGIQTRQNAPLMVKRWKEVTAVDKEDVIKGLAIKFDFDYTDPVVKKFIDAHMAKSYSLWR 166

Query: 63  AKLCQHYLSYP-TPEIARNNPSEQL 87
           ++L QHY  +   PE AR +P  +L
Sbjct: 167 SRLNQHYKQHAYDPEYARAHPPLKL 191

[Close]
BLAST of Moc11g26390 vs. NCBI nr
Match: XP_024176495.1 (uncharacterized protein LOC112182290 isoform X1 [Rosa chinensis] >XP_040368991.1 uncharacterized protein LOC112182290 isoform X1 [Rosa chinensis] >XP_040368992.1 uncharacterized protein LOC112182290 isoform X1 [Rosa chinensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0 

Query: 3   IGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAYM 62
           IG+ TR+   L V +W EV   +K  I   L   FDF+ +D V+ KFIE  M  ++  + 
Sbjct: 107 IGIQTRQNAPLMVKRWKEVSASDKEKITKALAIKFDFDGTDPVVRKFIEAHMSKSYSLWR 166

Query: 63  AKLCQHYLSYP-TPEIARNNPSEQL 87
           ++L +HY  +   PE AR +P  +L
Sbjct: 167 SRLNKHYKQHAYDPEYARAHPPVKL 191

[Close]
BLAST of Moc11g26390 vs. NCBI nr
Match: XP_040368993.1 (uncharacterized protein LOC112182290 isoform X2 [Rosa chinensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0 

Query: 3   IGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAYM 62
           IG+ TR+   L V +W EV   +K  I   L   FDF+ +D V+ KFIE  M  ++  + 
Sbjct: 92  IGIQTRQNAPLMVKRWKEVSASDKEKITKALAIKFDFDGTDPVVRKFIEAHMSKSYSLWR 151

Query: 63  AKLCQHYLSYP-TPEIARNNPSEQL 87
           ++L +HY  +   PE AR +P  +L
Sbjct: 152 SRLNKHYKQHAYDPEYARAHPPVKL 176

[Close]
BLAST of Moc11g26390 vs. ExPASy TrEMBL
Match: A0A5A7T037 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00700 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-06
Identity = 29/91 (31.87%), Postives = 52/91 (57.14%), Query Frame = 0 

Query: 2   AIGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAY 61
           AIGV+ R+   ++  KW++V +     + T L+  F F+ +D+ M +F+EH+M +T K +
Sbjct: 201 AIGVYVRKTFSVRCLKWADVGREYTEVVKTDLQRFFVFDFNDQAMNRFVEHQMLNTFKEF 260

Query: 62  MAKLCQHYLSYPTPEIARNNPSEQLLAKPDN 93
                +H+  Y  PE AR NP   L+ + ++
Sbjct: 261 QGDCHRHFKKYSDPEKARANPPNLLVGRDED 291

[Close]
BLAST of Moc11g26390 vs. ExPASy TrEMBL
Match: A0A6J1DUJ0 (uncharacterized protein LOC111023227 OS=Momordica charantia OX=3673 GN=LOC111023227 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.4e-06
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 0 

Query: 3   IGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAYM 62
           IGV  R  V L    WS+V Q +K +II +L   F  N +D ++ +++EHEM S H  + 
Sbjct: 125 IGVWVRSIVSLNCEHWSDVNQDDKNSIINRLSNQFILNLNDPIVYRYLEHEMSSRHIDFR 184

Query: 63  AKLCQHYLSYPTPEIARNNPSEQLLAKPD 92
            +L +HY+ Y +P+ AR++  + +    D
Sbjct: 185 YRLHKHYMQY-SPKEARHHKHKDVARGED 212

[Close]
BLAST of Moc11g26390 vs. ExPASy TrEMBL
Match: A0A2P6SF64 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0346821 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0 

Query: 3   IGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAYM 62
           IG+ TR+   L V +W EV   +K  I   L   FDF+ +D V+ KFIE  M  ++  + 
Sbjct: 107 IGIQTRQNAPLMVKRWKEVSASDKEKITKALAIKFDFDGTDPVVRKFIEAHMSKSYSLWR 166

Query: 63  AKLCQHYLSYP-TPEIARNNPSEQL 87
           ++L +HY  +   PE AR +P  +L
Sbjct: 167 SRLNKHYKQHAYDPEYARAHPPVKL 191

[Close]
BLAST of Moc11g26390 vs. ExPASy TrEMBL
Match: A0A2P6SF53 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0346841 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.3e-05
Identity = 31/85 (36.47%), Postives = 47/85 (55.29%), Query Frame = 0 

Query: 3   IGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAYM 62
           IG+ TR+   L V +W EV   +K  I   L   FDF+ +D V+ KFIE  M  ++  + 
Sbjct: 107 IGIQTRQNAPLMVKRWKEVSASDKEKITKALAIKFDFDGTDLVVRKFIEAHMSKSYSLWR 166

Query: 63  AKLCQHYLSYP-TPEIARNNPSEQL 87
           ++L +HY  +   PE AR +P  +L
Sbjct: 167 SRLNKHYKQHAYDPEYARAHPPIKL 191

[Close]
BLAST of Moc11g26390 vs. ExPASy TrEMBL
Match: A0A5A7SPG8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001110 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-04
Identity = 29/91 (31.87%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 2   AIGVHTREQVDLKVNKWSEVEQIEKRAIITQLKGHFDFNESDRVMMKFIEHEMRSTHKAY 61
           AIGV  R+   ++  KW++V +     +   L+  F  + +DR M +F+EH+M +T K +
Sbjct: 84  AIGVCVRKTFPVRCLKWTDVGREYIEVVKGDLQRFFVLDFNDRAMNRFVEHQMLTTFKEF 143

Query: 62  MAKLCQHYLSYPTPEIARNNPSEQLLAKPDN 93
            A   +H+  Y  PE AR NP   L+ + ++
Sbjct: 144 RADCHKHFKKYSDPEEARANPPNTLVGRDED 174

The following BLAST results are available for this feature:
BLAST of Moc11g26390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034937.16.9e-0631.87CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
XP_022156301.11.5e-0534.83uncharacterized protein LOC111023227 [Momordica charantia][more]
XP_011469238.12.0e-0536.47PREDICTED: uncharacterized protein LOC101294108 [Fragaria vesca subsp. vesca][more]
XP_024176495.11.0e-0436.47uncharacterized protein LOC112182290 isoform X1 [Rosa chinensis] >XP_040368991.1... [more]
XP_040368993.11.0e-0436.47uncharacterized protein LOC112182290 isoform X2 [Rosa chinensis][more]
BLAST of Moc11g26390 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc11g26390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T0373.3e-0631.87CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A6J1DUJ07.4e-0634.83uncharacterized protein LOC111023227 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A2P6SF644.8e-0536.47Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0346821 PE=4... [more]
A0A2P6SF536.3e-0536.47Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0346841 PE=4... [more]
A0A5A7SPG81.1e-0431.87CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of Moc11g26390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g26390.1Moc11g26390.1mRNA