Moc11g15720 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g15720
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Locationchr11: 11973017 .. 11973622 (-)
RNA-Seq ExpressionMoc11g15720
SyntenyMoc11g15720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCAATAGGCCAACATTGATTTTCATAGTCTCGTGCACTCATGATTCTAGTGCTTCATGTGTGGGTCATCTTCCTTTGAAAACCGAAGTCATCCTACCTTCATTAGAACTTGTACTTTATGCTTCAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGCGGACTTGCGGGTTGTCCCACTTTGGATAAGGCGGTTGCAATGGTTCTACAGGTATTGAAGCTAATAGATGACTTTGAAGCAATTGGGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAGCTCTCTCGCTTTAGTTGCCTCCGACTATTATGATTGTGAGGTAATGTTGGCGATCTTATTTGTGGTTCATACTGCAAAAATAACGAGTTTATAGGTACTGTAGAAGGATTGTATACCACAAATCCTTGTTCGTGCTTCCACCTGCGCTTTGAGCTTACTGTCTGGACTTTATTTTTTTCTTCTAATAGAGCTTCTATTATTTTCACGATGTGGCTCTTTATTAAATATAATAAAGACACTGGCAATTGTTCTGTTCTTCTATTCCCTGCAGTTTCTTCAGCATTTCCATTGGTAG

mRNA sequence

ATGCAAAGCAATAGGCCAACATTGATTTTCATAGTCTCGTGCACTCATGATTCTAGTGCTTCATGTGTGGGTCATCTTCCTTTGAAAACCGAAGTCATCCTACCTTCATTAGAACTTGTACTTTATGCTTCAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGCGGACTTGCGGGTTGTCCCACTTTGGATAAGGCGGTTGCAATGGTTCTACAGGTATTGAAGCTAATAGATGACTTTGAAGCAATTGGGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAGCTCTCTCGCTTTAGTTGCCTCCGACTATTATGATTGTGAGTTTCTTCAGCATTTCCATTGGTAG

Coding sequence (CDS)

ATGCAAAGCAATAGGCCAACATTGATTTTCATAGTCTCGTGCACTCATGATTCTAGTGCTTCATGTGTGGGTCATCTTCCTTTGAAAACCGAAGTCATCCTACCTTCATTAGAACTTGTACTTTATGCTTCAGTGAAGTACAGTTCTCAGTTGAATGACCTACAGCTCCTGCATGGTAATCACAGCGGACTTGCGGGTTGTCCCACTTTGGATAAGGCGGTTGCAATGGTTCTACAGGTATTGAAGCTAATAGATGACTTTGAAGCAATTGGGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAGCTCTCTCGCTTTAGTTGCCTCCGACTATTATGATTGTGAGTTTCTTCAGCATTTCCATTGGTAG

Protein sequence

MQSNRPTLIFIVSCTHDSSASCVGHLPLKTEVILPSLELVLYASVKYSSQLNDLQLLHGNHSGLAGCPTLDKAVAMVLQVLKLIDDFEAIGITARYRILGLDESSLALVASDYYDCEFLQHFHW
Homology
[Close]
BLAST of Moc11g15720 vs. NCBI nr
Match: XP_022151686.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 3.3e-35
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0 

Query: 1   MQSNRPTLIFIVSCTHDSSASCVGHLPLKTEVILPSLELVLYASVKYSSQLNDLQLLHGN 60
           MQSN  TLI I+  THDSSASC+ HLPLKT  ILPSLEL +YA VKYSSQLNDLQLL GN
Sbjct: 1   MQSNSSTLILIILYTHDSSASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGN 60

Query: 61  HSGLAGCPTLDKAVAMVLQVLKLIDDFEAIGITARYRILGLDESSLALVASDYYD 116
           HSGLAG  T DK VA+ L+V +LID  E IGIT + RILG D SSLALVASDYYD
Sbjct: 61  HSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYD 115

[Close]
BLAST of Moc11g15720 vs. NCBI nr
Match: XP_022144020.1 ((-)-germacrene D synthase-like [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 4.9e-23
Identity = 70/124 (56.45%), Postives = 74/124 (59.68%), Query Frame = 0 

Query: 1   MQSNRPTLIFIVSCTHDSSASCVGHLPLKTEVILPSLELVLYASVKYSSQLNDLQLLHGN 60
           MQSNR TLI I+  THDSSAS V HLPLKT  I+PSLEL LYA VKYSSQLNDLQLLHGN
Sbjct: 1   MQSNRSTLILIILYTHDSSASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGN 60

Query: 61  HSGLAGCPTLDKAVAMVLQVLKLIDDFEAIGITARYRILGLDESSLALVASDYYDCEFLQ 120
           HS  A  P                            RILG +ESSL LV SDYYDC+ L 
Sbjct: 61  HSEHAVVPLW-------------------------IRILGSNESSLTLVVSDYYDCQELV 99

Query: 121 HFHW 125
              W
Sbjct: 121 GLSW 99

[Close]
BLAST of Moc11g15720 vs. ExPASy TrEMBL
Match: A0A6J1DFF2 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX=3673 GN=LOC111019602 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0 

Query: 1   MQSNRPTLIFIVSCTHDSSASCVGHLPLKTEVILPSLELVLYASVKYSSQLNDLQLLHGN 60
           MQSN  TLI I+  THDSSASC+ HLPLKT  ILPSLEL +YA VKYSSQLNDLQLL GN
Sbjct: 1   MQSNSSTLILIILYTHDSSASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGN 60

Query: 61  HSGLAGCPTLDKAVAMVLQVLKLIDDFEAIGITARYRILGLDESSLALVASDYYD 116
           HSGLAG  T DK VA+ L+V +LID  E IGIT + RILG D SSLALVASDYYD
Sbjct: 61  HSGLAGRTTFDKVVAIALRVRELIDYLEIIGITTQCRILGSDGSSLALVASDYYD 115

[Close]
BLAST of Moc11g15720 vs. ExPASy TrEMBL
Match: A0A6J1CQG9 ((-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.4e-23
Identity = 70/124 (56.45%), Postives = 74/124 (59.68%), Query Frame = 0 

Query: 1   MQSNRPTLIFIVSCTHDSSASCVGHLPLKTEVILPSLELVLYASVKYSSQLNDLQLLHGN 60
           MQSNR TLI I+  THDSSAS V HLPLKT  I+PSLEL LYA VKYSSQLNDLQLLHGN
Sbjct: 1   MQSNRSTLILIILYTHDSSASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGN 60

Query: 61  HSGLAGCPTLDKAVAMVLQVLKLIDDFEAIGITARYRILGLDESSLALVASDYYDCEFLQ 120
           HS  A  P                            RILG +ESSL LV SDYYDC+ L 
Sbjct: 61  HSEHAVVPLW-------------------------IRILGSNESSLTLVVSDYYDCQELV 99

Query: 121 HFHW 125
              W
Sbjct: 121 GLSW 99

The following BLAST results are available for this feature:
BLAST of Moc11g15720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151686.13.3e-3573.04U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia][more]
XP_022144020.14.9e-2356.45(-)-germacrene D synthase-like [Momordica charantia][more]
BLAST of Moc11g15720 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc11g15720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFF21.6e-3573.04U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX... [more]
A0A6J1CQG92.4e-2356.45(-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE... [more]
BLAST of Moc11g15720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g15720.1Moc11g15720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding