Moc11g15300 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g15300
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr11: 11547607 .. 11547915 (-)
RNA-Seq Expression	Moc11g15300
Synteny	Moc11g15300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATACCTTTCTCAGGTAAAGAACCAGCTCGACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACACCGATGCGTTAGCTCTACTGGTTGCAGCTTATGAAACCGACCTAGGAAAAACTTTACCGGTCGAGATTCTACCCGAGCCAAGCATAGAAGCTCAGGAAGAAATGGATATCGACGAGCAAGGGCAACCAGAAGAAAACTGGATGAGCCCTTTGATCAAATATTTGAGAGACGGGATCCTGCCTACTGAAAAGATAGAGGCCCGGCAACTACAACAATGA

mRNA sequence

ATGGCGAAATACCTTTCTCAGGTAAAGAACCAGCTCGACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACACCGATGCGTTAGCTCTACTGGTTGCAGCTTATGAAACCGACCTAGGAAAAACTTTACCGGTCGAGATTCTACCCGAGCCAAGCATAGAAGCTCAGGAAGAAATGGATATCGACGAGCAAGGGCAACCAGAAGAAAACTGGATGAGCCCTTTGATCAAATATTTGAGAGACGGGATCCTGCCTACTGAAAAGATAGAGGCCCGGCAACTACAACAATGA

Coding sequence (CDS)

ATGGCGAAATACCTTTCTCAGGTAAAGAACCAGCTCGACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCAAAACGTCAACACCGATGCGTTAGCTCTACTGGTTGCAGCTTATGAAACCGACCTAGGAAAAACTTTACCGGTCGAGATTCTACCCGAGCCAAGCATAGAAGCTCAGGAAGAAATGGATATCGACGAGCAAGGGCAACCAGAAGAAAACTGGATGAGCCCTTTGATCAAATATTTGAGAGACGGGATCCTGCCTACTGAAAAGATAGAGGCCCGGCAACTACAACAATGA

Protein sequence

MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIEAQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ

Homology

[Close]

BLAST of Moc11g15300 vs. NCBI nr
Match: XP_022158579.1 (uncharacterized protein LOC111025033 [Momordica charantia])

HSP 1 Score: 172.6 bits (436), Expect = 1.8e-39
Identity = 86/102 (84.31%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIE 60
           MAKYLSQV+NQLDQFSKYEIRQIP AQNVN D LA L  AYETDLG+T+PVEILP PSIE
Sbjct: 401 MAKYLSQVRNQLDQFSKYEIRQIPHAQNVNADVLARLAVAYETDLGRTVPVEILPGPSIE 460

Query: 61  AQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ 103
           AQE MDID QGQPEENW SPLIKYL+DGILPTEKIEA+QLQ+
Sbjct: 461 AQEAMDIDNQGQPEENWKSPLIKYLKDGILPTEKIEAQQLQR 502

[Close]

BLAST of Moc11g15300 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 5.8e-38
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIE 60
           MAKYLSQV+NQLDQFSKYEI QIPRAQNV+ DALA L A YETDLG+T+PVEILPEPSIE
Sbjct: 738 MAKYLSQVRNQLDQFSKYEIXQIPRAQNVBADALARLAAXYETDLGRTVPVEILPEPSIE 797

Query: 61  AQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ 103
           AQE MDID QGQ EEN  SPLIKYL+DGILPTEKIEA+QLQ+
Sbjct: 798 AQEAMDIDNQGQXEENXKSPLIKYLKDGILPTEKIEAQQLQR 839

[Close]

BLAST of Moc11g15300 vs. NCBI nr
Match: XP_022154103.1 (uncharacterized protein LOC111021439 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 5.8e-38
Identity = 85/102 (83.33%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIE 60
           M KYLSQV+NQLDQFSKYEIRQIPRAQNVN DALA L   YETDLG+T+PVEIL  PSIE
Sbjct: 194 MTKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLATTYETDLGRTVPVEILLGPSIE 253

Query: 61  AQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ 103
           AQE MDID+QGQPEENW S LIKYL+DGILPTEKIEA+QLQQ
Sbjct: 254 AQEAMDIDDQGQPEENWKSLLIKYLKDGILPTEKIEAQQLQQ 295

[Close]

BLAST of Moc11g15300 vs. NCBI nr
Match: XP_022159204.1 (uncharacterized protein LOC111025623 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 6.2e-32
Identity = 77/102 (75.49%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIE 60
           MAKYLS+VK+QL QFSK+EIRQIP  QNVN DALA L AAY TDLG+T+ VEIL EPSI+
Sbjct: 341 MAKYLSRVKDQLGQFSKFEIRQIPCTQNVNADALARLAAAYGTDLGRTISVEILLEPSIK 400

Query: 61  AQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ 103
           AQE+MDIDEQ Q EENWMS LIKYL+DGILP E IE +QLQ+
Sbjct: 401 AQEKMDIDEQRQSEENWMSHLIKYLKDGILPDEMIEGQQLQR 442

[Close]

BLAST of Moc11g15300 vs. NCBI nr
Match: XP_022155342.1 (uncharacterized protein LOC111022476 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 3.8e-21
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 35  ALLVAAYETDLGKTLPVEILPEPSIEAQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEK 94
           A L AAYETDL +T+PVEILPEPSIEA E MDIDEQGQPE+NW S LIKYLRDGILPTEK
Sbjct: 371 ARLAAAYETDLRRTVPVEILPEPSIEAYEAMDIDEQGQPEKNWKSHLIKYLRDGILPTEK 430

Query: 95  IEARQLQQ 103
           IEA+QLQ+
Sbjct: 431 IEAQQLQR 438

[Close]

BLAST of Moc11g15300 vs. ExPASy TrEMBL
Match: A0A6J1DZU0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.7e-40
Identity = 86/102 (84.31%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIE 60
           MAKYLSQV+NQLDQFSKYEIRQIP AQNVN D LA L  AYETDLG+T+PVEILP PSIE
Sbjct: 401 MAKYLSQVRNQLDQFSKYEIRQIPHAQNVNADVLARLAVAYETDLGRTVPVEILPGPSIE 460

Query: 61  AQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ 103
           AQE MDID QGQPEENW SPLIKYL+DGILPTEKIEA+QLQ+
Sbjct: 461 AQEAMDIDNQGQPEENWKSPLIKYLKDGILPTEKIEAQQLQR 502

[Close]

BLAST of Moc11g15300 vs. ExPASy TrEMBL
Match: A0A6J1DJC7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.8e-38
Identity = 85/102 (83.33%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIE 60
           M KYLSQV+NQLDQFSKYEIRQIPRAQNVN DALA L   YETDLG+T+PVEIL  PSIE
Sbjct: 194 MTKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALARLATTYETDLGRTVPVEILLGPSIE 253

Query: 61  AQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ 103
           AQE MDID+QGQPEENW S LIKYL+DGILPTEKIEA+QLQQ
Sbjct: 254 AQEAMDIDDQGQPEENWKSLLIKYLKDGILPTEKIEAQQLQQ 295

[Close]

BLAST of Moc11g15300 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.3e-38
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIE 60
           MAKYLSQV+NQLDQFSKYEI QIPRAQNV+ DALA L A YETDLG+T+PVEILPEPSIE
Sbjct: 738 MAKYLSQVRNQLDQFSKYEIXQIPRAQNVDADALARLAAXYETDLGRTVPVEILPEPSIE 797

Query: 61  AQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ 103
           AQE MDID QGQ EEN  SPLIKYL+DGILPTEKIEA+QLQ+
Sbjct: 798 AQEAMDIDNQGQXEENXKSPLIKYLKDGILPTEKIEAQQLQR 839

[Close]

BLAST of Moc11g15300 vs. ExPASy TrEMBL
Match: A0A6J1E1Q5 (uncharacterized protein LOC111025623 OS=Momordica charantia OX=3673 GN=LOC111025623 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.0e-32
Identity = 77/102 (75.49%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MAKYLSQVKNQLDQFSKYEIRQIPRAQNVNTDALALLVAAYETDLGKTLPVEILPEPSIE 60
           MAKYLS+VK+QL QFSK+EIRQIP  QNVN DALA L AAY TDLG+T+ VEIL EPSI+
Sbjct: 341 MAKYLSRVKDQLGQFSKFEIRQIPCTQNVNADALARLAAAYGTDLGRTISVEILLEPSIK 400

Query: 61  AQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEKIEARQLQQ 103
           AQE+MDIDEQ Q EENWMS LIKYL+DGILP E IE +QLQ+
Sbjct: 401 AQEKMDIDEQRQSEENWMSHLIKYLKDGILPDEMIEGQQLQR 442

[Close]

BLAST of Moc11g15300 vs. ExPASy TrEMBL
Match: A0A6J1DP30 (uncharacterized protein LOC111022476 OS=Momordica charantia OX=3673 GN=LOC111022476 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 35  ALLVAAYETDLGKTLPVEILPEPSIEAQEEMDIDEQGQPEENWMSPLIKYLRDGILPTEK 94
           A L AAYETDL +T+PVEILPEPSIEA E MDIDEQGQPE+NW S LIKYLRDGILPTEK
Sbjct: 371 ARLAAAYETDLRRTVPVEILPEPSIEAYEAMDIDEQGQPEKNWKSHLIKYLRDGILPTEK 430

Query: 95  IEARQLQQ 103
           IEA+QLQ+
Sbjct: 431 IEAQQLQR 438

The following BLAST results are available for this feature:

BLAST of Moc11g15300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158579.1	1.8e-39	84.31	uncharacterized protein LOC111025033 [Momordica charantia]	[more]
XP_022156571.1	5.8e-38	83.33	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022154103.1	5.8e-38	83.33	uncharacterized protein LOC111021439 [Momordica charantia]	[more]
XP_022159204.1	6.2e-32	75.49	uncharacterized protein LOC111025623 [Momordica charantia]	[more]
XP_022155342.1	3.8e-21	82.35	uncharacterized protein LOC111022476 [Momordica charantia]	[more]

BLAST of Moc11g15300 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g15300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZU0	8.7e-40	84.31	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1	[more]
A0A6J1DJC7	2.8e-38	83.33	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1	[more]
A0A6J1DVC6	6.3e-38	83.33	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A6J1E1Q5	3.0e-32	75.49	uncharacterized protein LOC111025623 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DP30	1.8e-21	82.35	uncharacterized protein LOC111022476 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc11g15300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g15300.1	Moc11g15300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity