Moc11g15200 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc11g15200
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr11: 11441719 .. 11442162 (-)
RNA-Seq ExpressionMoc11g15200
SyntenyMoc11g15200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATCCAGATTGTCCCAATCACTCAGACAAAAGAGTCAGTTCCTATTATTTCCTATAATAATCAGGATGATCAAGCCAACCCAAATCGAAGTGACAAGCAACGTAAGACTCTTGTTTATTTTTGGCGACAAACGATTCAAAGAGGAGTGGAGCCACCACAACCTCAATAGCAAAGTCATGAATCCATCTCGTCTTTAGATACTGAACAATTTACCATTGCCTCAAGATAATACTAATGATCTTGTACTCAGCATCCAATTGCTCGATGTGTTGGTTATGGTTATTTATCTTTAGCAGTTCAGACCTTGGCTCTCAATCTAGAAACCAATGAGGTGCCAAAATCAATTCAACAGGGTATGAGTGATCCACGGTGGAAAAATGTGATAGATGATGAAATGAAGACTTTGAAGCTTAATGATACGTGGTGTCGCAAGGCTTAA

mRNA sequence

ATGCCTATCCAGATTGTCCCAATCACTCAGACAAAAGAGTCAGTTCCTATTATTTCCTATAATAATCAGGATGATCAAGCCAACCCAAATCGAAGTGACAAGCAACTTCAGACCTTGGCTCTCAATCTAGAAACCAATGAGGTGCCAAAATCAATTCAACAGGGTATGAGTGATCCACGGTGGAAAAATGTGATAGATGATGAAATGAAGACTTTGAAGCTTAATGATACGTGGTGTCGCAAGGCTTAA

Coding sequence (CDS)

ATGCCTATCCAGATTGTCCCAATCACTCAGACAAAAGAGTCAGTTCCTATTATTTCCTATAATAATCAGGATGATCAAGCCAACCCAAATCGAAGTGACAAGCAACTTCAGACCTTGGCTCTCAATCTAGAAACCAATGAGGTGCCAAAATCAATTCAACAGGGTATGAGTGATCCACGGTGGAAAAATGTGATAGATGATGAAATGAAGACTTTGAAGCTTAATGATACGTGGTGTCGCAAGGCTTAA

Protein sequence

MPIQIVPITQTKESVPIISYNNQDDQANPNRSDKQLQTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMKTLKLNDTWCRKA
Homology
[Close]
BLAST of Moc11g15200 vs. NCBI nr
Match: GEX84758.1 (putative RNA-directed DNA polymerase [Tanacetum cinerariifolium])

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-05
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 21  NNQDDQANPNR---SDKQLQTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMKTLKLNDT 80
           NN DD  +P      + + + LA++L + E+P SI+Q +   +WKN +DDEMK LK N+T
Sbjct: 48  NNADDIQDPTSEILQEHEKEALAVSLCSEEIPSSIEQALKSEKWKNTMDDEMKALKKNET 107

Query: 81  WCRKA 83
           W + A
Sbjct: 108 WDQSA 112

[Close]
BLAST of Moc11g15200 vs. NCBI nr
Match: XP_022139695.1 (uncharacterized protein LOC111010542 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 36  LQTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMK 71
           +QTLA +LE NEVPKSIQ+ +S+P+WKN++DDEMK
Sbjct: 175 VQTLAPSLEANEVPKSIQEAVSNPQWKNMVDDEMK 209

[Close]
BLAST of Moc11g15200 vs. NCBI nr
Match: GEY05871.1 (putative ribonuclease H-like domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 53.9 bits (128), Expect = 7.5e-04
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 37  QTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMKTLKLNDTWCRKA 83
           + LA++L + E+P SI+Q +   +WKN +DDEMK LK N+TW + A
Sbjct: 113 KALAVSLCSEEIPSSIEQALKSEKWKNTMDDEMKALKKNETWDQSA 158

[Close]
BLAST of Moc11g15200 vs. ExPASy TrEMBL
Match: A0A6J1CD10 (uncharacterized protein LOC111010542 OS=Momordica charantia OX=3673 GN=LOC111010542 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.3e-05
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 36  LQTLALNLETNEVPKSIQQGMSDPRWKNVIDDEMK 71
           +QTLA +LE NEVPKSIQ+ +S+P+WKN++DDEMK
Sbjct: 175 VQTLAPSLEANEVPKSIQEAVSNPQWKNMVDDEMK 209

The following BLAST results are available for this feature:
BLAST of Moc11g15200 vs. NCBI nr
Match NameE-valueIdentityDescription
GEX84758.16.8e-0541.54putative RNA-directed DNA polymerase [Tanacetum cinerariifolium][more]
XP_022139695.11.5e-0468.57uncharacterized protein LOC111010542 [Momordica charantia][more]
GEY05871.17.5e-0447.83putative ribonuclease H-like domain-containing protein [Tanacetum cinerariifoliu... [more]
BLAST of Moc11g15200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc11g15200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CD107.3e-0568.57uncharacterized protein LOC111010542 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
BLAST of Moc11g15200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc11g15200.1Moc11g15200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane