Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTAAAGGATATTCTTACGTGCAAGAAGATACACAAGACTTTGGATAAGCATGACGTTGCAAACATCACGATGTGTTTAACGATGAGTGTATCTAACGTCGTGGCAAACGAGACGACAATGAAAAAACTGATGCAGGCCTTGCAAGATAGGTATGAGAAACCTTCTGTCAACACCAAAATACTTCTTTGGACGAAGTATTTCAATATCCACGTGAAAGAGGGAACCTCGGTGAATTCCCACATTAATAAGCTCACCGACATATTGAACAAACTGGAAGGGATGAATATCAAGATCGATGAGGAGGTGAAGGCTATGAGGCTGCTAACATCTTTGTCTGATAGTTGGGATACGATGAAGACCACGGTGTCGAATTTGTTGGGGGATAATAATCTGAAATTTACAACTATTTGTGATGCTGCCTTATCTGAGGAAACCCAAAGAAAATTGAGGAGTGTCTGCATCTACTTTAGGGGCAGGAAATGGGGTCGAATCAGCTATGGTAGTTTAGAACAAGGGGAAGGGCAAGATGAATTACACAGGGAAGCAGCAGCAGAGAAATAA
mRNA sequence
ATGCAAGTAAAGGATATTCTTACGTGCAAGAAGATACACAAGACTTTGGATAAGCATGACGTTGCAAACATCACGATGTGTTTAACGATGAGTGTATCTAACGTCGTGGCAAACGAGACGACAATGAAAAAACTGATGCAGGCCTTGCAAGATAGGTATGAGAAACCTTCTGTCAACACCAAAATACTTCTTTGGACGAAGTATTTCAATATCCACGTGAAAGAGGGAACCTCGGTGAATTCCCACATTAATAAGCTCACCGACATATTGAACAAACTGGAAGGGATGAATATCAAGATCGATGAGGAGGTGAAGGCTATGAGGCTGCTAACATCTTTGTCTGATAGTTGGGATACGATGAAGACCACGGTGTCGAATTTGTTGGGGGATAATAATCTGAAATTTACAACTATTTGTGATGCTGCCTTATCTGAGGAAACCCAAAGAAAATTGAGGAGTGTCTGCATCTACTTTAGGGGCAGGAAATGGGGTCGAATCAGCTATGGTAGTTTAGAACAAGGGGAAGGGCAAGATGAATTACACAGGGAAGCAGCAGCAGAGAAATAA
Coding sequence (CDS)
ATGCAAGTAAAGGATATTCTTACGTGCAAGAAGATACACAAGACTTTGGATAAGCATGACGTTGCAAACATCACGATGTGTTTAACGATGAGTGTATCTAACGTCGTGGCAAACGAGACGACAATGAAAAAACTGATGCAGGCCTTGCAAGATAGGTATGAGAAACCTTCTGTCAACACCAAAATACTTCTTTGGACGAAGTATTTCAATATCCACGTGAAAGAGGGAACCTCGGTGAATTCCCACATTAATAAGCTCACCGACATATTGAACAAACTGGAAGGGATGAATATCAAGATCGATGAGGAGGTGAAGGCTATGAGGCTGCTAACATCTTTGTCTGATAGTTGGGATACGATGAAGACCACGGTGTCGAATTTGTTGGGGGATAATAATCTGAAATTTACAACTATTTGTGATGCTGCCTTATCTGAGGAAACCCAAAGAAAATTGAGGAGTGTCTGCATCTACTTTAGGGGCAGGAAATGGGGTCGAATCAGCTATGGTAGTTTAGAACAAGGGGAAGGGCAAGATGAATTACACAGGGAAGCAGCAGCAGAGAAATAA
Protein sequence
MQVKDILTCKKIHKTLDKHDVANITMCLTMSVSNVVANETTMKKLMQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEVKAMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQRKLRSVCIYFRGRKWGRISYGSLEQGEGQDELHREAAAEK
Homology
BLAST of Moc11g14900 vs. NCBI nr
Match:
TKR75000.1 (hypothetical protein D5086_0000289720 [Populus alba])
HSP 1 Score: 112.5 bits (280), Expect = 4.1e-21
Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 0
Query: 1 MQVKDILTCKKIH----------------KTLDKHDVANITMCLTMSVSNVVANETTMKK 60
MQ++D L KK+H + LD+ + I + L+ V++ V E + K
Sbjct: 23 MQIEDYLYEKKLHLPLLGSKPEKMEAEDWQLLDRQVLGIIRLSLSRRVAHNVTKEKSTAK 82
Query: 61 LMQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEV 120
LM+AL YEKPSVN K+ + K FN+ + E TSV H+N I N+L + I+ D+E+
Sbjct: 83 LMEALSGMYEKPSVNNKVHMMKKLFNLKIVENTSVTQHLNNFNTITNQLSSVEIEFDDEI 142
Query: 121 KAMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQRK 151
+A+ LL SL SW+ M+TTVSN G + LK+ I D L+EE +RK
Sbjct: 143 RALILLASLPSSWEGMRTTVSNSAGKSKLKYDDIRDLILAEEVRRK 188
BLAST of Moc11g14900 vs. NCBI nr
Match:
KAG7593230.1 (Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 110.9 bits (276), Expect = 1.2e-20
Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MQVKDILTCKKIHK---------------TLDKHDVANITMCLTMSVSNVVANETTMKKL 60
MQ++D L KK+H+ LD+ + I + L+ +V++ VA E T + L
Sbjct: 24 MQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVAKEKTTEGL 83
Query: 61 MQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEVK 120
M+ L D YEKPS N K+ L K F++ ++EG V +H+N+ I+N+L + I+ D+EV+
Sbjct: 84 MKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEVR 143
Query: 121 AMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQR 150
A+ LL SL +SW+ M+ VSN +G+ LKF + D L EE +R
Sbjct: 144 ALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR 187
BLAST of Moc11g14900 vs. NCBI nr
Match:
KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 110.9 bits (276), Expect = 1.2e-20
Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MQVKDILTCKKIHK---------------TLDKHDVANITMCLTMSVSNVVANETTMKKL 60
MQ++D L KK+H+ LD+ + I + L+ +V++ VA E T + L
Sbjct: 24 MQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVAKEKTTEGL 83
Query: 61 MQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEVK 120
M+ L D YEKPS N K+ L K F++ ++EG V +H+N+ I+N+L + I+ D+EV+
Sbjct: 84 MKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEVR 143
Query: 121 AMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQR 150
A+ LL SL +SW+ M+ VSN +G+ LKF + D L EE +R
Sbjct: 144 ALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR 187
BLAST of Moc11g14900 vs. NCBI nr
Match:
VDD56318.1 (unnamed protein product [Brassica oleracea])
HSP 1 Score: 110.5 bits (275), Expect = 1.6e-20
Identity = 61/164 (37.20%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MQVKDILTCKKIH---------------KTLDKHDVANITMCLTMSVSNVVANETTMKKL 60
MQ++D L KK+H + LD+ + I + L+ +V++ VA E T + L
Sbjct: 373 MQIEDYLYVKKLHQPLSKKPEKLDQDEWELLDRQVLGVIRLTLSKNVAHNVAKEKTTEGL 432
Query: 61 MQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEVK 120
M+ L D YEKPS N K+ L K F++ ++EG V +H+N+ I+N+L + I+ ++EV+
Sbjct: 433 MKVLSDMYEKPSANNKVFLMKKLFHLKMEEGCLVAAHVNEFNTIVNQLSSVEIEFEDEVR 492
Query: 121 AMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQR 150
A+ LL SL +SW+ M+ VSN +G LKF + D L+EE +R
Sbjct: 493 ALILLASLPNSWEPMRAAVSNFVGTQKLKFNDVKDRILAEEVRR 536
BLAST of Moc11g14900 vs. NCBI nr
Match:
KAG7561662.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 110.2 bits (274), Expect = 2.0e-20
Identity = 61/164 (37.20%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MQVKDILTCKKIHK---------------TLDKHDVANITMCLTMSVSNVVANETTMKKL 60
MQ++D L KK+H+ LD+ + I + L+ +V++ VA E T + L
Sbjct: 24 MQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKNVAHNVAKEKTTEGL 83
Query: 61 MQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEVK 120
M+ L D YEKPS N K+ L K F++ ++EG V +H+N+ I+N+L + I+ D+EV+
Sbjct: 84 MKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSSVEIEFDDEVR 143
Query: 121 AMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQR 150
A+ L+ SL +SW+ M+ VSN +G+ LKF + D L EE +R
Sbjct: 144 ALILIASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR 187
BLAST of Moc11g14900 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 5.2e-11
Identity = 46/157 (29.30%), Postives = 81/157 (51.59%), Query Frame = 0
Query: 16 LDKHDVANITMCLTMSVSNVVANETTMKKLMQALQDRYEKPSVNTKILLWTKYFNIHVKE 75
LD+ + I + L+ V N + +E T + + L+ Y ++ K+ L + + +H+ E
Sbjct: 55 LDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSE 114
Query: 76 GTSVNSHINKLTDILNKLEGMNIKIDEEVKAMRLLTSLSDSWDTMKTTVSNLLGDNNLKF 135
GT+ SH+N ++ +L + +KI+EE KA+ LL SL S+D + TT+ L G ++
Sbjct: 115 GTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTI--LHGKTTIEL 174
Query: 136 TTICDAALSEETQRKL-----RSVCIYFRGRKWGRIS 168
+ A L E RK +++ RGR + R S
Sbjct: 175 KDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSS 209
BLAST of Moc11g14900 vs. ExPASy TrEMBL
Match:
A0A4U5MYD6 (CCHC-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000289720 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 0
Query: 1 MQVKDILTCKKIH----------------KTLDKHDVANITMCLTMSVSNVVANETTMKK 60
MQ++D L KK+H + LD+ + I + L+ V++ V E + K
Sbjct: 23 MQIEDYLYEKKLHLPLLGSKPEKMEAEDWQLLDRQVLGIIRLSLSRRVAHNVTKEKSTAK 82
Query: 61 LMQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEV 120
LM+AL YEKPSVN K+ + K FN+ + E TSV H+N I N+L + I+ D+E+
Sbjct: 83 LMEALSGMYEKPSVNNKVHMMKKLFNLKIVENTSVTQHLNNFNTITNQLSSVEIEFDDEI 142
Query: 121 KAMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQRK 151
+A+ LL SL SW+ M+TTVSN G + LK+ I D L+EE +RK
Sbjct: 143 RALILLASLPSSWEGMRTTVSNSAGKSKLKYDDIRDLILAEEVRRK 188
BLAST of Moc11g14900 vs. ExPASy TrEMBL
Match:
A0A0D3BM55 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 3.4e-21
Identity = 63/164 (38.41%), Postives = 98/164 (59.76%), Query Frame = 0
Query: 1 MQVKDILTCKKIHKT---------------LDKHDVANITMCLTMSVSNVVANETTMKKL 60
MQ++D L KK+H+T LD+ + I + L+ +V++ VA E T + L
Sbjct: 1 MQMEDYLYGKKLHQTLSKKPEKMDQDEWELLDRQVLGVIRLTLSKNVAHNVAKEKTTEGL 60
Query: 61 MQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEVK 120
M+ L D YEKPS N K+ L K F++ ++EG V +H+N+ I+N+L + I+ D+EV+
Sbjct: 61 MKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGLVAAHVNEFNTIVNQLSSVEIEFDDEVR 120
Query: 121 AMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQR 150
A+ LL SL +SW+ M+ VSN +G LKF + D L+EE +R
Sbjct: 121 ALILLASLPNSWEPMRAAVSNSVGTQKLKFNDVRDRILAEEVRR 164
BLAST of Moc11g14900 vs. ExPASy TrEMBL
Match:
A0A803NDX7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 5.7e-21
Identity = 65/171 (38.01%), Postives = 98/171 (57.31%), Query Frame = 0
Query: 14 KTLDKHDVANITMCLTMSVSNVVANETTMKKLMQALQDRYEKPSVNTKILLWTKYFNIHV 73
K LD+ + I + L+ +V+ +A ETT LM+AL + YEKPS + K+ L + F++ +
Sbjct: 7 KLLDRQALGVIRLTLSRNVAFNIAKETTTAGLMKALSNMYEKPSASNKVHLMRRLFSLRM 66
Query: 74 KEGTSVNSHINKLTDILNKLEGMNIKIDEEVKAMRLLTSLSDSWDTMKTTVSNLLGDNNL 133
EG SV H+N+L + +L + IK D+EV A+ LL+SL DSW+ T VS+ G+N L
Sbjct: 67 SEGGSVAQHLNELNSVTTQLSSVEIKFDDEVLALILLSSLPDSWNATVTAVSSSSGNNKL 126
Query: 134 KFTTICDAALSEETQRK----LRSVCIYFRGRKWGRISYGSLEQGEGQDEL 181
KF +CD LSEE +R+ +++ C K + GEG D L
Sbjct: 127 KFDDVCDLVLSEEIRRRESGTIKNQCKRTPKGKEVKAEANVTSTGEGDDTL 177
BLAST of Moc11g14900 vs. ExPASy TrEMBL
Match:
A0A3P6FTI2 (Abhydrolase_3 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC8T49547H PE=4 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 7.5e-21
Identity = 61/164 (37.20%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 1 MQVKDILTCKKIH---------------KTLDKHDVANITMCLTMSVSNVVANETTMKKL 60
MQ++D L KK+H + LD+ + I + L+ +V++ VA E T + L
Sbjct: 373 MQIEDYLYVKKLHQPLSKKPEKLDQDEWELLDRQVLGVIRLTLSKNVAHNVAKEKTTEGL 432
Query: 61 MQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEVK 120
M+ L D YEKPS N K+ L K F++ ++EG V +H+N+ I+N+L + I+ ++EV+
Sbjct: 433 MKVLSDMYEKPSANNKVFLMKKLFHLKMEEGCLVAAHVNEFNTIVNQLSSVEIEFEDEVR 492
Query: 121 AMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQR 150
A+ LL SL +SW+ M+ VSN +G LKF + D L+EE +R
Sbjct: 493 ALILLASLPNSWEPMRAAVSNFVGTQKLKFNDVKDRILAEEVRR 536
BLAST of Moc11g14900 vs. ExPASy TrEMBL
Match:
A0A0D3DMW7 (CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 9.8e-21
Identity = 61/164 (37.20%), Postives = 98/164 (59.76%), Query Frame = 0
Query: 1 MQVKDILTCKKIH---------------KTLDKHDVANITMCLTMSVSNVVANETTMKKL 60
MQ++D L KK+H + LD+ + I + L+ +V++ +A E T + L
Sbjct: 25 MQIEDYLYGKKLHQPLSKKPEKMDQDEWELLDRQVLGVIRLTLSKNVTHNIAKEKTTEGL 84
Query: 61 MQALQDRYEKPSVNTKILLWTKYFNIHVKEGTSVNSHINKLTDILNKLEGMNIKIDEEVK 120
M+ L D YEKPSVN K+ L K F++ ++EG V +H+N+ I+N+L + I+ D+EV+
Sbjct: 85 MKVLSDMYEKPSVNNKVFLMKKLFHLKMEEGGLVAAHVNEFNTIVNQLSSVEIEFDDEVR 144
Query: 121 AMRLLTSLSDSWDTMKTTVSNLLGDNNLKFTTICDAALSEETQR 150
A+ LL SL +SW+ M+ V+N +G LKF + D L+EE +R
Sbjct: 145 ALILLASLPNSWEPMRAAVNNSVGTQKLKFNDVRDRILAEEVRR 188
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TKR75000.1 | 4.1e-21 | 39.16 | hypothetical protein D5086_0000289720 [Populus alba] | [more] |
| KAG7593230.1 | 1.2e-20 | 37.80 | Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
| KAG7584790.1 | 1.2e-20 | 37.80 | Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
| VDD56318.1 | 1.6e-20 | 37.20 | unnamed protein product [Brassica oleracea] | [more] |
| KAG7561662.1 | 2.0e-20 | 37.20 | Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P10978 | 5.2e-11 | 29.30 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A4U5MYD6 | 2.0e-21 | 39.16 | CCHC-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000289720... | [more] |
| A0A0D3BM55 | 3.4e-21 | 38.41 | Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1 | [more] |
| A0A803NDX7 | 5.7e-21 | 38.01 | Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | [more] |
| A0A3P6FTI2 | 7.5e-21 | 37.20 | Abhydrolase_3 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC8T49... | [more] |
| A0A0D3DMW7 | 9.8e-21 | 37.20 | CCHC-type domain-containing protein OS=Brassica oleracea var. oleracea OX=109376... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
