Moc11g13900 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13900
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Glutamate receptor
Location	chr11: 10323539 .. 10328750 (-)
RNA-Seq Expression	Moc11g13900
Synteny	Moc11g13900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTAGCAATATTGAGAGGAAAAAAGCTTGACGGATATGTCCTTGGAACCAAGGCACAACCAGCTGAACACCTAGCACTTCAAACACAAGAAGCAGGATCATCTGAACTTGCTGTGAATCCTGCCTACGAAGTATGGACAATAATGGACCAAGCACTCCTAGGTTGGCTGTATGGATCTATGACTCCAACCATAGCCTCTGAAATCATTGATCTCTCTATATCTAGAAAAGTTTGGAAAGCTTTGGAAGATCGTTATGGCTCTACAAACCGAGCTAGAAAACAGCAGTTGAAGGCATCTCTACAAAACACTAGAAAAAGATCCTTAAAGATGAGTGAATATCTCACATTGATGAAACAAACTGCAGATAACCTTGCTATCGCTGGAGCTCCTGTTGGGATCGTTGGGATCGATGATCTCGTCTCATATGTCTTATCTGGTCTAGATGTTGAGTATTTACCTATAATCTGCCAAATCAACAAGGAAGAAATGAATTGGCAGGAGCTTCATGCCACTCTTATTACTTTCGAAAGCACCTTGATTCATTTGAATACTATCAACCAAATCACTGAAGGTACCTCTAACCTTGTTGCCAACCTCACCTTCAATTGACAAGGGTATTCCTCCTCTCAAGGTAATAACAAAACCAACAACCAAGGAAGAGGTCAAGGTGGAAACAGAGGGAATGGAAGAGCAAGAGGAAATGAAGGAAGAACTAACTACTACAAAAACAATGGTTCTAAGCCCACTTATCAAGTGTGCGGTAAATATGGTCATTCAGCTACGGTTTGCTATCACAGGTTCGAAAAGGAGTTGTCTCCCCAAACCAAGTAAGCAGTGGACATAACACTGCATATATTGCCACCTCAGAAGTTGTTGCAGATCCTAGTTGGCTAGCTGATAGTGGAGCATCAAACCATGTAACACCTGACCTGAGCAACTTGAAGGTGCAATCTGACTATCAGGGTGATGAGTCAATTACTCTTGGTAATGGTTCCAAACTCTTAATTACTAATGTGGGTCACAACACTTATGATACTAAGGGCACCTCTGTGAACCTAAAAAATATTCTGCATGTCTCTAGTATTAAAAGAAATTTGTTGAGCATATGAAGGTTGACTATTGATAATAGTTTTGTGGTAGTTTTTGACTCAAACTATTGTTTTGTGAAGGACAAGGCAACAGGGATGGTGGTGCTTCAAGGGAAACTTAGAGATGGTCTTTACCAACTTCAACTAGATCTACCTAAGGCAAGCCAAGAGTCAAGAGCTCGTGTCTTCGAAGCCTCTTTTTCAAATTCTGTCCCCCAAGTCTACCTAGAGTCTAGTCATTTGTCTACTTCATCTGTCTTTAACATTAAAAAAGAGTCTAGAGTCCAAAGAATTTGGCATTAACGTTTAGGTCACTCGTCGGATAGGGTGTTGAGCCAAGTTCTCAAAGTTTGTAATGAAAAACCCACAGTCAATGAAAATCCTATGTTTTGTGATGCTTGCCAATTTGGAAAGTCTCATTCTCAGCCCTTTAAACCTTCCAATTCTCGAACTAATGCACCATTTGAGCTTGTTCACTATGACCTTTGGGGTCCTTCACCAATTTCCTCTACCTTAGGTTACAACTACTACATTAGCTTTGTTGATAACTTCACAAGACTCACCCACATTTTTCCTCTCAAAAGAGAATCTGAGGCTTTTACCACCTTCATTCAATATCAAAGTCTTGTGGAAAACCGATTTGACAAAAGAATTAAAATCATTCAAAGTGATTGGGGAGGAGAGTTTAGACCGTTTGTCCCTCTTCTAAAAGCAAAAGGTATAGAGTTCTGTCATCCTTGCCTGCACACGAGTGAACAAAACGGAATAGTGGAGAGAAAACATCGACACATAGTAGAAATGGGCTTATCCCTCCTAGCTCAAGCCTTAATGCCCTTGAAATATTGGTGGGATGCTTTTGTCACAACCACTTATATTATTAACCGCCTTCCAACTTCTGTCCTAAACTATGCCTCACCCTGGGAAGTAGCTTTTTGCAAAAATCCTAACTACAAATTCCTAAAAGTCTTTGGTTGTTCATGCTTCCTGTGTCTCAGACCATAACAAAAGCACAAGTTCCAATTTCATTCCACCAAATGTGTGTTCCTAGGCTATAGTGAAGCTCACAAATGGTACAAATGTCTAAACTCAAGTGGTCGCATTTACATTTCGAGGAGTGTCTTTTTTAATGCAGATGAGTTTCCTTTTAAACTTGGATTCCTAACCACTTCACCCTCTATCCAACAATCCTATGAGACCATTGTGACTTGGTTGAATACACCTAATGATCTTTCTGCCACAAATAATAACTCCTCACACCAACACACTTCTACAATCACAAATGATCCTCCAATTCTCTCTCCATTAACCTCACCTTCAACTACTCTAGTTTCCCCTGAGGCAGAACTATTCCCTGAAGCTACTAATGATCAAAATGAGTCTGAAACATGGACCTTGGCAGAAAATGTCCCAACATCTGATATGACCAGAGACAATCCAGCTGAAATTGAAGAAAACACGGGAATAGTGGAAGGCCCTTCACACCCTATGCAGACTAGATCGAAAAGTGGGATTTTTAAACTCAAGTTGCGTACTTTTGTAGCTGCCAAACAGAGAGATATGGTTGAAATGGTAGGGTTGGAACCAAGGTCAATAGTAGAGGCACTTCAATCTCAAAGTTGGAAAAATGCCATGAGCAAAGAAATAGGAGCTCTAATGAGAAATAATACATGGACTCTTGTTCCCTTCTCCAAAAGCTACAACTTAGTTGGAAACAAGTGGATCTTCAAGACTAAGTACAAGCAGGATGGAACCATTCAAAGATTTAAAGCAAGGTTAGTGGCAAAGGGGTTTCATCAACATCCTAGACTTGACTTCAATGAAACTTTCAGTCCGGTTGTTAAAACACCTACAATTAGAATAGTCTTGACCATAGCATTGGCAAGAGGTTGGGGAGTAAGGCAACTGGGTATTTAACGCGTTCCAAAATGGAAAGTTAGAAGAAGATGTTTACATGCTACAACTTGAGGGTTTTATATATCAAAGGTGGCCAAACCACATATGTAAACTCAATAAAGCCTTGTATGACTTGAAGCAAGCCCCACGTGCGTGGTATGAAAGTTTGAAGCAAACGTTGGCTAGATGGGGATTCAAAAATTCTAAATCAGACAGCTCTCTTTTTTACTATCATCAAGGTAACCAAGTTCTATTTACCTTAATTTATGTTGATGATATTTTGATTATTGGGAATTGCAAACACTTGATTCAGAGATTTATTCGTGAGCTAAACGCCATATATGCCTTGAAAGATCTTGGAGAACTTGACTACTTCCTTGGTATTGAGACTTATAGAAATGGAGATGGTATGTACCTAACCCAAGCCAAATACATAACTGATCTACTTGATCAATTGAACCTAAACCACATTAAACCTTGTGGAACACCAGGAGTAACTGGTAGACCTCTATCTATGTATGAAGGACAACCATTGGAAAATCCCACCATTTATAGAAGTTCCGTTGGAGGACTTCTATACCTAGCTTATACCAGACTAGAAATTGCCTTCATAACAAACAAATTAAGTCAATTCATGCAGAATCCAACATATACACACTGGAAGGCAGTAAAGAGAGTTATAAGATACTTACAAGTAACAAAAAACTATGGATTACACCTAAAGGCATCAAACAACTTACAAATTACAGCCTTTTCTGATGTCGATTGAGCGTGTAATCTGGATGATAGACGCCTCATTTCTGCTTATCTTGTGTTCCTTGGAAGCTCTTTAGTGTCGTGGGCCTCTAGAAAACAGAGAGTTATTGCCCGTTCTAGCACAGAAGCCAAATATAGGGCCTTGGCACATGCAGCAACAGAATTGAGTTGGATTCAGTCCTTATTGAAGGAAATCAATGTCCCTATTGAAAAAACTCCAATAATTTGGTGCGATAACACAAGTGCCCTTTCCTTGGCAGCAAACCCTGATCTTCATTCAAGAAGTAAACATGTAGAAATTGATCTACATTTTATCAGAGACAAGGTAATTGACAAGTAACTTGAAATTAGATATGTTCCTACCGACGAACAGGTAGCTGATGGCCTGACGAAGAACCTTTCTGAAGCAAGTTTCAACACCATGCGCAGCAAACTTGGGGTACTGCCAGTCTCCTGTAGTTTGAGGGGAGGAGTTGGAAAATAAAAGAAAAGTCCCGTGTAAAAGTCTCTTTTTATGTGTATTGTCTTATTCCTCTTCAATAGGCTTCTGAGCCCTTTTCCCTCTTTGGGCATATGGTTTTTGGGCCTCTATCGTTGGCTGTACCCTAGGGTTTTTCTCTTCTTTATTTCTCTTTACTTAATGTACTATATATTTATCTTGTTCCCTAATGAGAAGCAGTAGCATCGTTTGTGTGCCTTTGCCTTTACTTTATTTTTTTCTCATGTCGATAATCTTCTTGCAACTTATCGTGCAACTTCCACCTACTTGGCTCACTTAGAAGTTCTTCAGCCATTGACATGACTTCCATCACACACACCTTGCATAACCGCCCAAGCCAATGACCATGTGTAAACCTGTGGCAACGCTAACATCACATCTTCTATCATAGTAAAGCGAACATACCATGAGGATGATTTCTATCTCTTTTCAAAGGAAGAGATCATCATCTTCTCTAACAAGAGAAACACTGTCAGCATCCAGCCTAGAGCCATTTGACGAATCTACTCTGTTAGGACAATTTTTCTTCATATACCAGGTTGTCTGTATCTTCAGCAACAAGCTTTCTTTTGCATGAATCTTTCTTATTCTTCCAATTGCTAGCTACCAATGTTGAATCTTCATGTTAAGTACGTCCTTCACTCTTTAGCTTTCTTTCCTCTGAAAACAGTTTACTAGAAGCCTCAGCAAAATTCAAAGAGATTACTCAGATAATTTGAAGTTTTGGTACCTTCCTCCATTTGCAGCATGTGAAACTGCTCCTTTAGGTACAGTCGATTTCGGATTCCCTCGCTTCAAGCTTCTCCGAAAACTCTTTGGCTATCGAAATTCCACGCACATTTGCAAGAATATTCTTAGCAAAACTTTTTCGTATCGTGCTTGCAGCCCTCAAATCCATTTCTCCCAATCTTCATTACTAATGCTAGATTTCTTAGAACCTCAGCCGGATCCATTGTTGGACTCCACTTGA

mRNA sequence

ATGGTCCTAGCAATATTGAGAGGAAAAAAGCTTGACGGATATGTCCTTGGAACCAAGGCACAACCAGCTGAACACCTAGCACTTCAAACACAAGAAGCAGGATCATCTGAACTTGCTGTGAATCCTGCCTACGAAGTATGGACAATAATGGACCAAGCACTCCTAGGTTGGCTGTATGGATCTATGACTCCAACCATAGCCTCTGAAATCATTGATCTCTCTATATCTAGAAAAGTTTGGAAAGCTTTGGAAGATCGTTATGGCTCTACAAACCGAGCTAGAAAACAGCAGTTGAAGGCATCTCTACAAAACACTAGAAAAAGATCCTTAAAGATGAGTGAATATCTCACATTGATGAAACAAACTGCAGATAACCTTGCTATCGCTGGAGCTCCTGTTGGGATCGTTGGGATCGATGATCTCGTCTCATATGTCTTATCTGGTCTAGATGTTGAGTATTTACCTATAATCTGCCAAATCAACAAGGAAGAAATGAATTGGCAGGAGCTTCATGCCACTCTTATTACTTTCGAAAGCACCTTGATTCATTTGAATACTATCAACCAAATCACTGAAGAAGTTGTTGCAGATCCTAGTTGGCTAGCTGATAGTGGAGCATCAAACCATGTAACACCTGACCTGAGCAACTTGAAGGTGCAATCTGACTATCAGGGTGATGAGTCAATTACTCTTGGTAATGGTTCCAAACTCTTAATTACTAATGTGGGTCACAACACTTATGATACTAAGGGCACCTCTGACAAGGCAACAGGGATGGTGGTGCTTCAAGGGAAACTTAGAGATGGTCTTTACCAACTTCAACTAGATCTACCTAAGGCAAGCCAAGAGTCAAGAGCTCGTGTCTTCGAAGCCTCTTTTTCAAATTCTGTCCCCCAAGTCTACCTAGAGTCTAAACTATTCCCTGAAGCTACTAATGATCAAAATGAGTCTGAAACATGGACCTTGGCAGAAAATGTCCCAACATCTGATATGACCAGAGACAATCCAGCTGAAATTGAAGAAAACACGGGAATAGTGGAAGGCCCTTCACACCCTATGCAGACTAGATCGAAAAGTGGGATTTTTAAACTCAAGTTGCGTACTTTTGTAGCTGCCAAACAGAGAGATATGGTTGAAATGTTTACTAGAAGCCTCAGCAAAATTCAAAGAGATTACTCAGATAATTTGAAGTTTTGGTACCTTCCTCCATTTGCAGCATGTGAAACTGCTCCTTTAGGTACAGTCGATTTCGGATTCCCTCGCTTCAAGCTTCTCCGAAAACTCTTTGGCTATCGAAATTCCACGCACATTTGCAAGAATATTCTTAGCAAAACTTTTTCGTATCGTGCTTGCAGCCCTCAAATCCATTTCTCCCAATCTTCATTACTAATGCTAGATTTCTTAGAACCTCAGCCGGATCCATTGTTGGACTCCACTTGA

Coding sequence (CDS)

ATGGTCCTAGCAATATTGAGAGGAAAAAAGCTTGACGGATATGTCCTTGGAACCAAGGCACAACCAGCTGAACACCTAGCACTTCAAACACAAGAAGCAGGATCATCTGAACTTGCTGTGAATCCTGCCTACGAAGTATGGACAATAATGGACCAAGCACTCCTAGGTTGGCTGTATGGATCTATGACTCCAACCATAGCCTCTGAAATCATTGATCTCTCTATATCTAGAAAAGTTTGGAAAGCTTTGGAAGATCGTTATGGCTCTACAAACCGAGCTAGAAAACAGCAGTTGAAGGCATCTCTACAAAACACTAGAAAAAGATCCTTAAAGATGAGTGAATATCTCACATTGATGAAACAAACTGCAGATAACCTTGCTATCGCTGGAGCTCCTGTTGGGATCGTTGGGATCGATGATCTCGTCTCATATGTCTTATCTGGTCTAGATGTTGAGTATTTACCTATAATCTGCCAAATCAACAAGGAAGAAATGAATTGGCAGGAGCTTCATGCCACTCTTATTACTTTCGAAAGCACCTTGATTCATTTGAATACTATCAACCAAATCACTGAAGAAGTTGTTGCAGATCCTAGTTGGCTAGCTGATAGTGGAGCATCAAACCATGTAACACCTGACCTGAGCAACTTGAAGGTGCAATCTGACTATCAGGGTGATGAGTCAATTACTCTTGGTAATGGTTCCAAACTCTTAATTACTAATGTGGGTCACAACACTTATGATACTAAGGGCACCTCTGACAAGGCAACAGGGATGGTGGTGCTTCAAGGGAAACTTAGAGATGGTCTTTACCAACTTCAACTAGATCTACCTAAGGCAAGCCAAGAGTCAAGAGCTCGTGTCTTCGAAGCCTCTTTTTCAAATTCTGTCCCCCAAGTCTACCTAGAGTCTAAACTATTCCCTGAAGCTACTAATGATCAAAATGAGTCTGAAACATGGACCTTGGCAGAAAATGTCCCAACATCTGATATGACCAGAGACAATCCAGCTGAAATTGAAGAAAACACGGGAATAGTGGAAGGCCCTTCACACCCTATGCAGACTAGATCGAAAAGTGGGATTTTTAAACTCAAGTTGCGTACTTTTGTAGCTGCCAAACAGAGAGATATGGTTGAAATGTTTACTAGAAGCCTCAGCAAAATTCAAAGAGATTACTCAGATAATTTGAAGTTTTGGTACCTTCCTCCATTTGCAGCATGTGAAACTGCTCCTTTAGGTACAGTCGATTTCGGATTCCCTCGCTTCAAGCTTCTCCGAAAACTCTTTGGCTATCGAAATTCCACGCACATTTGCAAGAATATTCTTAGCAAAACTTTTTCGTATCGTGCTTGCAGCCCTCAAATCCATTTCTCCCAATCTTCATTACTAATGCTAGATTTCTTAGAACCTCAGCCGGATCCATTGTTGGACTCCACTTGA

Protein sequence

MVLAILRGKKLDGYVLGTKAQPAEHLALQTQEAGSSELAVNPAYEVWTIMDQALLGWLYGSMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMKQTADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQINKEEMNWQELHATLITFESTLIHLNTINQITEEVVADPSWLADSGASNHVTPDLSNLKVQSDYQGDESITLGNGSKLLITNVGHNTYDTKGTSDKATGMVVLQGKLRDGLYQLQLDLPKASQESRARVFEASFSNSVPQVYLESKLFPEATNDQNESETWTLAENVPTSDMTRDNPAEIEENTGIVEGPSHPMQTRSKSGIFKLKLRTFVAAKQRDMVEMFTRSLSKIQRDYSDNLKFWYLPPFAACETAPLGTVDFGFPRFKLLRKLFGYRNSTHICKNILSKTFSYRACSPQIHFSQSSLLMLDFLEPQPDPLLDST

Homology

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BLAST of Moc11g13900 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 220.3 bits (560), Expect = 3.5e-53
Identity = 136/331 (41.09%), Postives = 172/331 (51.96%), Query Frame = 0


Query: 1   MVLAILRGKKLDGYVLGTKAQPAEHLALQTQEAGSSELAVNPAYEVWTIMDQALLGWLYG 60
           MVLA+LRG+K DGYVLGT A+P + L     E  S  L VNP Y  W  +DQALLGWL+G
Sbjct: 57  MVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWLFG 116

Query: 61  SMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMK 120
           SMTP+IA +++D   SR+VWKALED YG+T++AR  QL+  LQNT+K SLKMSEYL LMK
Sbjct: 117 SMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYLGLMK 176

Query: 121 QTADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQI-NKEEMNWQELHATLITFES 180
           Q +++L +AG P   V  + L+S VLSGL+ EYLPI+CQI  K+  +WQEL ATL+TFE+
Sbjct: 177 QASESLKLAGEP---VAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQELFATLVTFEN 236

Query: 181 TLIHLNTINQIT------------------------------------------------ 226
           TL+ LN ++  T                                                
Sbjct: 237 TLMRLNIVSTATAEGISDGSXNYVHSKQNSVGNRQFHQSQSGQGQGRGSYNSNDAKNNVR 296

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BLAST of Moc11g13900 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 219.9 bits (559), Expect = 4.6e-53
Identity = 139/342 (40.64%), Postives = 176/342 (51.46%), Query Frame = 0


Query: 1   MVLAILRGKKLDGYVLGTKAQPAEHLALQTQEAGSSELAVNPAYEVWTIMDQALLGWLYG 60
           MVLA+LRG+K DGYVLGT A+P + L     E  S  L VNP Y  W  +DQALLGWL+G
Sbjct: 57  MVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWLFG 116

Query: 61  SMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMK 120
           SMTP+IA +++D   SR+VWKALED YG+T++AR  QL+  LQNT+K SLKMSEYL LMK
Sbjct: 117 SMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYLGLMK 176

Query: 121 QTADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQI-NKEEMNWQELHATLITFES 180
           Q +++L +AG P   V  + L+S VLSGL+ EYLPI+CQI  K+  +WQEL ATL+TFE+
Sbjct: 177 QASESLKLAGEP---VAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQELFATLVTFEN 236

Query: 181 TLIHLNTINQIT------------------------------------------------ 237
           TL+ LN ++  T                                                
Sbjct: 237 TLMRLNIVSTATAEGISDGSXNYVHSKQNSVGNRQFHQSQSGQGQGRGSYNSNDAKNNVR 296

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BLAST of Moc11g13900 vs. NCBI nr
Match: XP_022142770.1 (uncharacterized protein LOC111012809 [Momordica charantia])

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-44
Identity = 132/345 (38.26%), Postives = 169/345 (48.99%), Query Frame = 0


Query: 62  MTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMKQ 121
           M+P IA +++ ++ SR VWKALED Y + N+AR  QLK SLQ TRK  LKMS+YL+ MKQ
Sbjct: 1   MSPIIACDVLSMATSRDVWKALEDLYETANKARINQLKTSLQTTRKNQLKMSDYLSTMKQ 60

Query: 122 TADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQIN-KEEMNWQELHATLITFEST 181
            AD L +AG P   +    L+S VL+GL+ EYL IICQIN KE ++WQE+HATLITFE+ 
Sbjct: 61  LADCLTLAGEP---ISTSSLLSSVLTGLNAEYLQIICQINAKENISWQEVHATLITFENI 120

Query: 182 LIHLNTI----------------------------------------------------- 241
           LIHLN +                                                     
Sbjct: 121 LIHLNNVSIADVSGPSANYTYNKSVSQNWNPHQQGQGRGQGRNSRGRNRGGRFQGQRSNS 180

Query: 242 ----------------------------------NQITE------EVVADPSWLADSGAS 301
                                             NQ         EV+ DP+WL DSGA+
Sbjct: 181 SRPTCQVCGKIGHLAVVCYHRLNMQYMGNTPQGGNQAPNAYITGPEVIIDPNWLIDSGAT 240

Query: 302 NHVTPDLSNLKVQSDYQGDESITLGNGSKLLITNVGHNTYDTKGTSDKATGMVVLQGKLR 303
           NH T D +NL  Q++YQG+E++T+GN  KL I +VG      K T DK TG ++L+GKL 
Sbjct: 241 NHKTNDATNLGQQAEYQGNENLTVGNRYKLAIAHVGSTVICQKETMDKETGRIMLEGKLN 300

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BLAST of Moc11g13900 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-40
Identity = 123/381 (32.28%), Postives = 176/381 (46.19%), Query Frame = 0


Query: 1   MVLAILRGKKLDGYVLGTKAQPAEHLA-------LQTQEAGSSELAVNPAYEVWTIMDQA 60
           + L ILR  KL  Y+ G K  P  HL        ++   +  S   +NP YE W ++D+ 
Sbjct: 50  LALPILRSYKLFDYLTGDKPCPPTHLVPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKL 109

Query: 61  LLGWLYGSMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMS 120
           LLGWLY SM   +A +++  S SR++W A+++ +G  +RA    LK   Q T K SL+M 
Sbjct: 110 LLGWLYNSMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMI 169

Query: 121 EYLTLMKQTADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQI-NKEEMNWQELHA 180
           EYL LMK  ADNLA+AG+    V + DLVS VL+GLD EY PI+  +  K  ++W E+HA
Sbjct: 170 EYLKLMKSHADNLALAGSS---VSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHA 229

Query: 181 TLITFESTLIHLNT------INQ------------------------------------- 240
            L+T+E  L + N+      INQ                                     
Sbjct: 230 ELLTYEKRLEYQNSLKSGIPINQTQTPSVNYVDGRSFQTNQRTNNGNNSHGSNTHRGGGY 289

Query: 241 -----------------------------------------ITEEVVADPSWLADSGASN 274
                                                     T E V DPSW ADSGA++
Sbjct: 290 QRGSFGQRNRGRGPQPTQHKNFTPSNSGPNVFAAHHTSTTVTTPETVIDPSWYADSGATS 349

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BLAST of Moc11g13900 vs. NCBI nr
Match: TXG48382.1 (hypothetical protein EZV62_027676 [Acer yangbiense])

HSP 1 Score: 166.4 bits (420), Expect = 6.1e-37
Identity = 112/351 (31.91%), Postives = 179/351 (51.00%), Query Frame = 0


Query: 1   MVLAILRGKKLDGYVLGTKAQPAEHLALQTQEAGSSELAVNPAYEVWTIMDQALLGWLYG 60
           +VL ++RG +++GY+ G K  P E +    ++     L  NP YE W + DQ LLGWLY 
Sbjct: 190 LVLPVIRGNRMEGYITGAKKCPPEFIITDLEQEADETLEENPEYEDWIVHDQILLGWLYN 249

Query: 61  SMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMK 120
           SM P +ASE+I    S+ +W+++   +G   ++     K   Q  +K  +KMS+YL   K
Sbjct: 250 SMEPDVASEVIGSETSKDLWESINTLFGLKTKSNIAYYKREFQKLQKGGMKMSDYLKAAK 309

Query: 121 QTADNLAIAGAPVGIVGIDDLVSYVLSGLD-VEYLPIICQIN-KEEMNWQELHATLITFE 180
           + ADNLA+AG P   V ++DLVS VL GLD VEY P++CQIN +E+++W +L A L+++E
Sbjct: 310 KLADNLALAGRP---VPLEDLVSQVLDGLDSVEYNPLVCQINEREDISWIDLQAKLLSYE 369

Query: 181 STLIHLN------TINQITEEVVADPSWLADSGASNHVTPDLSNL-KVQSDYQGDESITL 240
             L  +N       + Q++   V   +    +G +        N  K  S +  D  +  
Sbjct: 370 KRLEKINAGFSSINLGQVSANYVGTKNTGGQTGQNRSQGFLQGNQNKGSSPFSRDSVMHT 429

Query: 241 GNGSKLLITNVGH---------------------NTYDTKG--TSDKATGMVVLQGKLRD 300
            N   LL+ ++ H                       +D+ G    DKATG+ +LQGKL++
Sbjct: 430 HNNRTLLLKDILHVPDIKKNLLSISQLTACNNIIVEFDSCGCVVKDKATGVALLQGKLKE 489

Query: 301 GLYQLQLDLPK-ASQESRARVFEASFSNSVPQVYLESKLFPEATNDQNESE 319
           GLYQL     K  S    +  +++S+ +     Y     FP  +++ N ++
Sbjct: 490 GLYQLDFPTNKHVSSAPNSPAYKSSYQSYNKSSYRSH--FPNQSSNCNSAQ 535

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BLAST of Moc11g13900 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.2e-04
Identity = 19/52 (36.54%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 199 SWLADSGASNHVTPDLSNLKVQSDYQGDESITLGNGSKLLITNVGHNTYDTK 251
           +WL DSGA++H+T D +NL +   Y G + + + +GS + I++ G  +  TK
Sbjct: 330 NWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTK 381

[Close]

BLAST of Moc11g13900 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 7.0e-04
Identity = 20/55 (36.36%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 199 SWLADSGASNHVTPDLSNLKVQSDYQGDESITLGNGSKLLITNVGHNTYDTKGTS 254
           +WL DSGA++H+T D +NL     Y G + + + +GS + IT+ G  +  T   S
Sbjct: 309 NWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRS 363

[Close]

BLAST of Moc11g13900 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-53
Identity = 136/331 (41.09%), Postives = 172/331 (51.96%), Query Frame = 0


Query: 1   MVLAILRGKKLDGYVLGTKAQPAEHLALQTQEAGSSELAVNPAYEVWTIMDQALLGWLYG 60
           MVLA+LRG+K DGYVLGT A+P + L     E  S  L VNP Y  W  +DQALLGWL+G
Sbjct: 57  MVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWLFG 116

Query: 61  SMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMK 120
           SMTP+IA +++D   SR+VWKALED YG+T++AR  QL+  LQNT+K SLKMSEYL LMK
Sbjct: 117 SMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYLGLMK 176

Query: 121 QTADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQI-NKEEMNWQELHATLITFES 180
           Q +++L +AG P   V  + L+S VLSGL+ EYLPI+CQI  K+  +WQEL ATL+TFE+
Sbjct: 177 QASESLKLAGEP---VAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQELFATLVTFEN 236

Query: 181 TLIHLNTINQIT------------------------------------------------ 226
           TL+ LN ++  T                                                
Sbjct: 237 TLMRLNIVSTATAEGISDGSXNYVHSKQNSVGNRQFHQSQSGQGQGRGSYNSNDAKNNVR 296

[Close]

BLAST of Moc11g13900 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.2e-53
Identity = 139/342 (40.64%), Postives = 176/342 (51.46%), Query Frame = 0


Query: 1   MVLAILRGKKLDGYVLGTKAQPAEHLALQTQEAGSSELAVNPAYEVWTIMDQALLGWLYG 60
           MVLA+LRG+K DGYVLGT A+P + L     E  S  L VNP Y  W  +DQALLGWL+G
Sbjct: 57  MVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYVEWQAVDQALLGWLFG 116

Query: 61  SMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMK 120
           SMTP+IA +++D   SR+VWKALED YG+T++AR  QL+  LQNT+K SLKMSEYL LMK
Sbjct: 117 SMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYLGLMK 176

Query: 121 QTADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQI-NKEEMNWQELHATLITFES 180
           Q +++L +AG P   V  + L+S VLSGL+ EYLPI+CQI  K+  +WQEL ATL+TFE+
Sbjct: 177 QASESLKLAGEP---VAFNYLMSCVLSGLEAEYLPIVCQIEGKDSTSWQELFATLVTFEN 236

Query: 181 TLIHLNTINQIT------------------------------------------------ 237
           TL+ LN ++  T                                                
Sbjct: 237 TLMRLNIVSTATAEGISDGSXNYVHSKQNSVGNRQFHQSQSGQGQGRGSYNSNDAKNNVR 296

[Close]

BLAST of Moc11g13900 vs. ExPASy TrEMBL
Match: A0A6J1CLV9 (uncharacterized protein LOC111012809 OS=Momordica charantia OX=3673 GN=LOC111012809 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-45
Identity = 132/345 (38.26%), Postives = 169/345 (48.99%), Query Frame = 0


Query: 62  MTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMKQ 121
           M+P IA +++ ++ SR VWKALED Y + N+AR  QLK SLQ TRK  LKMS+YL+ MKQ
Sbjct: 1   MSPIIACDVLSMATSRDVWKALEDLYETANKARINQLKTSLQTTRKNQLKMSDYLSTMKQ 60

Query: 122 TADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQIN-KEEMNWQELHATLITFEST 181
            AD L +AG P   +    L+S VL+GL+ EYL IICQIN KE ++WQE+HATLITFE+ 
Sbjct: 61  LADCLTLAGEP---ISTSSLLSSVLTGLNAEYLQIICQINAKENISWQEVHATLITFENI 120

Query: 182 LIHLNTI----------------------------------------------------- 241
           LIHLN +                                                     
Sbjct: 121 LIHLNNVSIADVSGPSANYTYNKSVSQNWNPHQQGQGRGQGRNSRGRNRGGRFQGQRSNS 180

Query: 242 ----------------------------------NQITE------EVVADPSWLADSGAS 301
                                             NQ         EV+ DP+WL DSGA+
Sbjct: 181 SRPTCQVCGKIGHLAVVCYHRLNMQYMGNTPQGGNQAPNAYITGPEVIIDPNWLIDSGAT 240

Query: 302 NHVTPDLSNLKVQSDYQGDESITLGNGSKLLITNVGHNTYDTKGTSDKATGMVVLQGKLR 303
           NH T D +NL  Q++YQG+E++T+GN  KL I +VG      K T DK TG ++L+GKL 
Sbjct: 241 NHKTNDATNLGQQAEYQGNENLTVGNRYKLAIAHVGSTVICQKETMDKETGRIMLEGKLN 300

[Close]

BLAST of Moc11g13900 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.7e-41
Identity = 123/381 (32.28%), Postives = 176/381 (46.19%), Query Frame = 0


Query: 1   MVLAILRGKKLDGYVLGTKAQPAEHLA-------LQTQEAGSSELAVNPAYEVWTIMDQA 60
           + L ILR  KL  Y+ G K  P  HL        ++   +  S   +NP YE W ++D+ 
Sbjct: 50  LALPILRSYKLFDYLTGDKPCPPTHLVPTDTPTNIEGSTSSQSSPTLNPTYEAWIVVDKL 109

Query: 61  LLGWLYGSMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMS 120
           LLGWLY SM   +A +++  S SR++W A+++ +G  +RA    LK   Q T K SL+M 
Sbjct: 110 LLGWLYNSMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMI 169

Query: 121 EYLTLMKQTADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPIICQI-NKEEMNWQELHA 180
           EYL LMK  ADNLA+AG+    V + DLVS VL+GLD EY PI+  +  K  ++W E+HA
Sbjct: 170 EYLKLMKSHADNLALAGSS---VSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHA 229

Query: 181 TLITFESTLIHLNT------INQ------------------------------------- 240
            L+T+E  L + N+      INQ                                     
Sbjct: 230 ELLTYEKRLEYQNSLKSGIPINQTQTPSVNYVDGRSFQTNQRTNNGNNSHGSNTHRGGGY 289

Query: 241 -----------------------------------------ITEEVVADPSWLADSGASN 274
                                                     T E V DPSW ADSGA++
Sbjct: 290 QRGSFGQRNRGRGPQPTQHKNFTPSNSGPNVFAAHHTSTTVTTPETVIDPSWYADSGATS 349

[Close]

BLAST of Moc11g13900 vs. ExPASy TrEMBL
Match: A0A5C7GVK1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027676 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-37
Identity = 112/351 (31.91%), Postives = 179/351 (51.00%), Query Frame = 0


Query: 1   MVLAILRGKKLDGYVLGTKAQPAEHLALQTQEAGSSELAVNPAYEVWTIMDQALLGWLYG 60
           +VL ++RG +++GY+ G K  P E +    ++     L  NP YE W + DQ LLGWLY 
Sbjct: 190 LVLPVIRGNRMEGYITGAKKCPPEFIITDLEQEADETLEENPEYEDWIVHDQILLGWLYN 249

Query: 61  SMTPTIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNTRKRSLKMSEYLTLMK 120
           SM P +ASE+I    S+ +W+++   +G   ++     K   Q  +K  +KMS+YL   K
Sbjct: 250 SMEPDVASEVIGSETSKDLWESINTLFGLKTKSNIAYYKREFQKLQKGGMKMSDYLKAAK 309

Query: 121 QTADNLAIAGAPVGIVGIDDLVSYVLSGLD-VEYLPIICQIN-KEEMNWQELHATLITFE 180
           + ADNLA+AG P   V ++DLVS VL GLD VEY P++CQIN +E+++W +L A L+++E
Sbjct: 310 KLADNLALAGRP---VPLEDLVSQVLDGLDSVEYNPLVCQINEREDISWIDLQAKLLSYE 369

Query: 181 STLIHLN------TINQITEEVVADPSWLADSGASNHVTPDLSNL-KVQSDYQGDESITL 240
             L  +N       + Q++   V   +    +G +        N  K  S +  D  +  
Sbjct: 370 KRLEKINAGFSSINLGQVSANYVGTKNTGGQTGQNRSQGFLQGNQNKGSSPFSRDSVMHT 429

Query: 241 GNGSKLLITNVGH---------------------NTYDTKG--TSDKATGMVVLQGKLRD 300
            N   LL+ ++ H                       +D+ G    DKATG+ +LQGKL++
Sbjct: 430 HNNRTLLLKDILHVPDIKKNLLSISQLTACNNIIVEFDSCGCVVKDKATGVALLQGKLKE 489

Query: 301 GLYQLQLDLPK-ASQESRARVFEASFSNSVPQVYLESKLFPEATNDQNESE 319
           GLYQL     K  S    +  +++S+ +     Y     FP  +++ N ++
Sbjct: 490 GLYQLDFPTNKHVSSAPNSPAYKSSYQSYNKSSYRSH--FPNQSSNCNSAQ 535

[Close]

BLAST of Moc11g13900 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 4.2e-04
Identity = 32/112 (28.57%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 47  WTIMDQALLGWLYGSMTP-TIASEIIDLSISRKVWKALEDRYGSTNRARKQQLKASLQNT 106
           W   D  +   LYG++TP       +  S SR +W  +++++ +   AR  +L + L+  
Sbjct: 65  WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTK 124

Query: 107 RKRSLKMSEYLTLMKQTADNLAIAGAPVGIVGIDDLVSYVLSGLDVEYLPII 158
               +++++Y   MK+ AD+L     P   V   +LV YVL+GL+ ++  II
Sbjct: 125 DIGDMRVADYYRKMKKLADSLRNVDVP---VTDRNLVMYVLNGLNPKFDNII 173

The following BLAST results are available for this feature:

BLAST of Moc11g13900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157750.1	3.5e-53	41.09	uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]	[more]
XP_022157748.1	4.6e-53	40.64	uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]	[more]
XP_022142770.1	1.8e-44	38.26	uncharacterized protein LOC111012809 [Momordica charantia]	[more]
XP_022151683.1	1.2e-40	32.28	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
TXG48382.1	6.1e-37	31.91	hypothetical protein EZV62_027676 [Acer yangbiense]	[more]

BLAST of Moc11g13900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.2e-04	36.54	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.0e-04	36.36	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc11g13900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTZ7	1.7e-53	41.09	uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DU77	2.2e-53	40.64	uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CLV9	8.5e-45	38.26	uncharacterized protein LOC111012809 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DCW4	5.7e-41	32.28	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5C7GVK1	2.9e-37	31.91	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027676 PE=4 SV=1	[more]

BLAST of Moc11g13900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	4.2e-04	28.57	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 47..178 e-value: 3.1E-10 score: 39.9
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 188..248
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 2..186
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 188..248 coord: 2..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13900.1	Moc11g13900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane