Moc11g13860 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13860
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	UBN2_3 domain-containing protein
Location	chr11: 10307721 .. 10308259 (+)
RNA-Seq Expression	Moc11g13860
Synteny	Moc11g13860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGATCTCTGTATCTCCAACAGTTTCCTTGGAACCTGTTTTGTCGAGTTCATCTTTGGATCTTTCTCAACAAGTGGTTCCTTACTCTATTTCTCTAGTTGCATGGTTTTGGTTACAGAACTTACAGAAGATGATTACGTTTCATGGAGCAGAGCTATGGTGATTGGCCTTTCTATGAACACTAAGCTTGGTTTCATTGACGGCACTCTTCCATGGCCTACTGGTGACTTGCTCCCTACTTGGATTAGGAATAACCTCGTTGTAATTTCATGTATCTTAAATTCTGTTTCCAAGGCAATATCAACAAGTATAATTTTTTTTTTTATTCTGCTAGGGAAATATGGCTTGACCCTTAAGAACGCTTTCAGCATAAGAATGCCCCTCGAATCTTTCAGATTAAGGGTGATTTAGCTACACTTAATCAAAATCAAGATTCTATCAGCATGTATTTCACTAAGATCAAGGCTCTCTGGGAAGAATTGAACTCTTACCGGCTTGCTTGCACTTGTGGTTCTTGCCATCGTGGGGGACTTTGA

mRNA sequence

ATGACTGATCTCTGTATCTCCAACAGTTTCCTTGGAACCTGTTTTGTCGAGTTCATCTTTGGATCTTTCTCAACAAGTGGTTCCTTACTCTATTTCTCTAGTTGCATGGTTTTGGTTACAGAACTTACAGAAGATGATTACGTTTCATGGAGCAGAGCTATGGTGATTGGCCTTTCTATGAACACTAAGCTTGGTTTCATTGACGGCACTCTTCCATGGCCTACTGGTGACTTGCTCCCTACTTGGATTAGGAATAACCTCGTTCATAAGAATGCCCCTCGAATCTTTCAGATTAAGGGTGATTTAGCTACACTTAATCAAAATCAAGATTCTATCAGCATGTATTTCACTAAGATCAAGGCTCTCTGGGAAGAATTGAACTCTTACCGGCTTGCTTGCACTTGTGGTTCTTGCCATCGTGGGGGACTTTGA

Coding sequence (CDS)

ATGACTGATCTCTGTATCTCCAACAGTTTCCTTGGAACCTGTTTTGTCGAGTTCATCTTTGGATCTTTCTCAACAAGTGGTTCCTTACTCTATTTCTCTAGTTGCATGGTTTTGGTTACAGAACTTACAGAAGATGATTACGTTTCATGGAGCAGAGCTATGGTGATTGGCCTTTCTATGAACACTAAGCTTGGTTTCATTGACGGCACTCTTCCATGGCCTACTGGTGACTTGCTCCCTACTTGGATTAGGAATAACCTCGTTCATAAGAATGCCCCTCGAATCTTTCAGATTAAGGGTGATTTAGCTACACTTAATCAAAATCAAGATTCTATCAGCATGTATTTCACTAAGATCAAGGCTCTCTGGGAAGAATTGAACTCTTACCGGCTTGCTTGCACTTGTGGTTCTTGCCATCGTGGGGGACTTTGA

Protein sequence

MTDLCISNSFLGTCFVEFIFGSFSTSGSLLYFSSCMVLVTELTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTGDLLPTWIRNNLVHKNAPRIFQIKGDLATLNQNQDSISMYFTKIKALWEELNSYRLACTCGSCHRGGL

Homology

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BLAST of Moc11g13860 vs. NCBI nr
Match: XP_022154973.1 (uncharacterized protein LOC111022117 [Momordica charantia])

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-26
Identity = 69/146 (47.26%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 33  SSCMVLVTE-LTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTGDLLPTWIRN------ 92
           +S +VLV++ LT  +YVSWSR+M I LS+  KLGFI+G+LP P GDLLP WIRN      
Sbjct: 6   TSNLVLVSKPLTNSNYVSWSRSMTIALSIKNKLGFINGSLPKPAGDLLPVWIRNKHVVIA 65

Query: 93  -----------------NLVH------------KNAPRIFQIKGDLATLNQNQDSISMYF 143
                            N  H            +N P+IFQ++ DLATL Q+Q S++MY+
Sbjct: 66  WFLNSVSKPISASLIFTNSTHEIWLDLKDRFQLQNGPQIFQLRRDLATLTQDQLSVTMYY 125

[Close]

BLAST of Moc11g13860 vs. NCBI nr
Match: XP_038895765.1 (uncharacterized protein LOC120083929 [Benincasa hispida])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 33  SSCMVLVTE-LTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTGDLLPTWIRNNLV--- 92
           +S +VLV+E LT+D+YVSWSR+MV+ L +  KLGFIDG+LP PTGDLL  WI NN V   
Sbjct: 43  TSNLVLVSELLTDDNYVSWSRSMVLTLFIQNKLGFIDGSLPRPTGDLLHLWIHNNNVVVS 102

Query: 93  --------------------------------HKNAPRIFQIKGDLATLNQNQDSISMYF 144
                                            +N PRIF +K +L++L Q+QDS++MYF
Sbjct: 103 WILKSVSKSISSSILFTESAQAIWLDLQDCFQRRNGPRIFHLKRELSSLKQDQDSVTMYF 162

[Close]

BLAST of Moc11g13860 vs. NCBI nr
Match: XP_022154608.1 (uncharacterized protein LOC111021831 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 64/139 (46.04%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 36  MVLVTE-LTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTGDLLPTWIRNNLV------ 95
           +VLVT+ LTE++Y SWSR+M+I LS+  KLGFIDG++  P G+LLP WI NN V      
Sbjct: 52  LVLVTQPLTEENYSSWSRSMLIALSIKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWIL 111

Query: 96  -----------------------------HKNAPRIFQIKGDLATLNQNQDSISMYFTKI 139
                                          N PRIFQ+K DLA L QNQ S+S+YFTK+
Sbjct: 112 NSVSKEISSSILFSESARDIWIDLKERFEKSNGPRIFQLKRDLAQLWQNQQSVSLYFTKL 171

[Close]

BLAST of Moc11g13860 vs. NCBI nr
Match: KAA8517066.1 (hypothetical protein F0562_017116 [Nyssa sinensis])

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-22
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 41  ELTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTGDLLPTWIRNNLVHKNAPRIFQIKG 100
           +LT ++Y +WSRAM+I LS+  KLGF+DG++P P        +R+    +N PRIFQ+K 
Sbjct: 46  QLTGENYTNWSRAMLIALSVKNKLGFVDGSIPEPQD------LRDRFQQRNGPRIFQLKR 105

Query: 101 DLATLNQNQDSISMYFTKIKALWEELNSYRLACTCGSCHRGGL 144
           +L  L Q Q S+S+YFTK+K +WEEL++YR  C+CG C  GG+
Sbjct: 106 ELMNLRQEQSSVSIYFTKLKTIWEELSNYRPNCSCGKCSCGGV 142

[Close]

BLAST of Moc11g13860 vs. NCBI nr
Match: KAA8536734.1 (hypothetical protein F0562_029212 [Nyssa sinensis])

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-22
Identity = 60/146 (41.10%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 37  VLVT-ELTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTG---DLLPTWIRNNLV---- 96
           VLV+ +LT ++Y +WSRAM+I LS+  KLGF+DG +P P G   +LL +WIRNN +    
Sbjct: 41  VLVSQQLTGENYTNWSRAMLIALSVKNKLGFVDGFIPEPQGTDNNLLDSWIRNNNIVISW 100

Query: 97  -------------------------------HKNAPRIFQIKGDLATLNQNQDSISMYFT 144
                                           +N PRIFQ+K +L  L Q Q S+S+YFT
Sbjct: 101 ILNSISKEISASIIFAAFAREIWLDLRDRFQQRNGPRIFQLKRELMNLRQEQSSVSIYFT 160

[Close]

BLAST of Moc11g13860 vs. ExPASy TrEMBL
Match: A0A6J1DLQ9 (uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022117 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.5e-26
Identity = 69/146 (47.26%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 33  SSCMVLVTE-LTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTGDLLPTWIRN------ 92
           +S +VLV++ LT  +YVSWSR+M I LS+  KLGFI+G+LP P GDLLP WIRN      
Sbjct: 6   TSNLVLVSKPLTNSNYVSWSRSMTIALSIKNKLGFINGSLPKPAGDLLPVWIRNKHVVIA 65

Query: 93  -----------------NLVH------------KNAPRIFQIKGDLATLNQNQDSISMYF 143
                            N  H            +N P+IFQ++ DLATL Q+Q S++MY+
Sbjct: 66  WFLNSVSKPISASLIFTNSTHEIWLDLKDRFQLQNGPQIFQLRRDLATLTQDQLSVTMYY 125

[Close]

BLAST of Moc11g13860 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 64/139 (46.04%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 36  MVLVTE-LTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTGDLLPTWIRNNLV------ 95
           +VLVT+ LTE++Y SWSR+M+I LS+  KLGFIDG++  P G+LLP WI NN V      
Sbjct: 52  LVLVTQPLTEENYSSWSRSMLIALSIKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWIL 111

Query: 96  -----------------------------HKNAPRIFQIKGDLATLNQNQDSISMYFTKI 139
                                          N PRIFQ+K DLA L QNQ S+S+YFTK+
Sbjct: 112 NSVSKEISSSILFSESARDIWIDLKERFEKSNGPRIFQLKRDLAQLWQNQQSVSLYFTKL 171

[Close]

BLAST of Moc11g13860 vs. ExPASy TrEMBL
Match: A0A5J5B2C5 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029212 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 60/146 (41.10%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 37  VLVT-ELTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTG---DLLPTWIRNNLV---- 96
           VLV+ +LT ++Y +WSRAM+I LS+  KLGF+DG +P P G   +LL +WIRNN +    
Sbjct: 41  VLVSQQLTGENYTNWSRAMLIALSVKNKLGFVDGFIPEPQGTDNNLLDSWIRNNNIVISW 100

Query: 97  -------------------------------HKNAPRIFQIKGDLATLNQNQDSISMYFT 144
                                           +N PRIFQ+K +L  L Q Q S+S+YFT
Sbjct: 101 ILNSISKEISASIIFAAFAREIWLDLRDRFQQRNGPRIFQLKRELMNLRQEQSSVSIYFT 160

[Close]

BLAST of Moc11g13860 vs. ExPASy TrEMBL
Match: A0A5J4ZHF9 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017116 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 41  ELTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTGDLLPTWIRNNLVHKNAPRIFQIKG 100
           +LT ++Y +WSRAM+I LS+  KLGF+DG++P P        +R+    +N PRIFQ+K 
Sbjct: 46  QLTGENYTNWSRAMLIALSVKNKLGFVDGSIPEPQD------LRDRFQQRNGPRIFQLKR 105

Query: 101 DLATLNQNQDSISMYFTKIKALWEELNSYRLACTCGSCHRGGL 144
           +L  L Q Q S+S+YFTK+K +WEEL++YR  C+CG C  GG+
Sbjct: 106 ELMNLRQEQSSVSIYFTKLKTIWEELSNYRPNCSCGKCSCGGV 142

[Close]

BLAST of Moc11g13860 vs. ExPASy TrEMBL
Match: A0A5J5BKC2 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_021321 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.3e-22
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 0


Query: 36  MVLVTELTEDDYVSWSRAMVIGLSMNTKLGFIDGTLPWPTG---DLLPTWIRNNLV---- 95
           M++  +LT ++Y +WSRAM+I LS+  KLGF+DG++  P G   +LL +WIRNN +    
Sbjct: 41  MLVSQQLTGENYTNWSRAMLIALSVKNKLGFVDGSILEPQGTGNNLLNSWIRNNNIVISW 100

Query: 96  -------------------------------HKNAPRIFQIKGDLATLNQNQDSISMYFT 144
                                           +N PRIFQ+K +L  L+Q Q S+S+YFT
Sbjct: 101 ILNSVSKEISASIIFAASAREIWLDLRDRFQQRNRPRIFQLKRELMNLHQEQSSVSIYFT 160

[Close]

BLAST of Moc11g13860 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-10
Identity = 39/135 (28.89%), Postives = 56/135 (41.48%), Query Frame = 0


Query: 44  EDDYVSWSRAMVIGLSMNTKLGFIDGTLPWP------------TGDLLPTWIRNNLVHKN 103
           ED+YV+W       L +  K GFIDGTLP P               ++  W+ N++  K 
Sbjct: 39  EDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKL 98

Query: 104 AP-------------------------RIFQIKGDLATLNQNQDSISMYFTKIKALWEEL 140
                                      +I+Q++  LATL Q  DS+  YF K+  +W EL
Sbjct: 99  LESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMEL 158

The following BLAST results are available for this feature:

BLAST of Moc11g13860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154973.1	7.1e-26	47.26	uncharacterized protein LOC111022117 [Momordica charantia]	[more]
XP_038895765.1	1.8e-24	44.90	uncharacterized protein LOC120083929 [Benincasa hispida]	[more]
XP_022154608.1	2.1e-22	46.04	uncharacterized protein LOC111021831 [Momordica charantia]	[more]
KAA8517066.1	2.8e-22	48.54	hypothetical protein F0562_017116 [Nyssa sinensis]	[more]
KAA8536734.1	2.8e-22	41.10	hypothetical protein F0562_029212 [Nyssa sinensis]	[more]

BLAST of Moc11g13860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g13860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLQ9	3.5e-26	47.26	uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DKR8	1.0e-22	46.04	uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5J5B2C5	1.4e-22	41.10	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029212 PE=4 SV=1	[more]
A0A5J4ZHF9	1.4e-22	48.54	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017116 PE=4 SV=1	[more]
A0A5J5BKC2	2.3e-22	39.73	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_021321 PE=4 SV=1	[more]

BLAST of Moc11g13860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	4.5e-10	28.89	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 36..74 e-value: 1.2E-10 score: 41.0
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 37..87 coord: 89..138
None	No IPR available	PANTHER	PTHR37610:SF13	CATALYTIC REGION, PUTATIVE-RELATED	coord: 37..87 coord: 89..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13860.1	Moc11g13860.1	mRNA