Moc11g13720 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13720
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr11: 10199891 .. 10200569 (+)
RNA-Seq Expression	Moc11g13720
Synteny	Moc11g13720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCTAATTTTGTTCCTCGTGGTCATGGCGGTGGCGTAATCATAACGGTGGTGGCCGTAGTCAAATTTCTGCTGGTCGTGGTTCGCCTAATTTTTCGAACCCTAATTCGGTTAGATTTGGAGGTCATAATAGTTCTGGTGGTTTCTTGAATACTAAGCCTGATTTGCCTACTTCTTCTAACCGTGTTGTTTGCCAAATTTGTCATCGTTTTGGTCATACTGCATTGGACTGTTATCACCGCATGAATCAAGATTACAGATGTCGCCATTCTCCTGCACATTTAGCTGCTCTTGCCGCTAATTGTACTGCTAAAGCGTCACCAAATCAGCCATCTACTCCTACTGGTTCTCAGATTTGGTTATCTGATTCAGGTTGTAATGCGCACTTAACTTCAGATCTTGCCAAAATTGTTGTTTCTTCTGACTACAATGGTGAATCACATATTGCTGTTGGCAATGGCCAGCCCTTACCTATCACTCATATAGGTTTTACTTCTATTTCCACTGGTTCTTCTACTTTTCTACTTTCCAATCTTCTTCGTGTCCTAAATATATCAGCCAATCTTCTCTCTCTATATAAATTTTGTCTTGATAATAACTGTGTGTCTCTTTTTTATGCTCATTCCTTCACCATTCAGGACAAAGTGTCGGGACGTGTACTCTTCCATGGACCTAG

mRNA sequence

ATGATGGCTAATTTTGTTCCTCGTGGTCATGGCGGTGGCGTAATCATAACGGTGGTGGCCGTAGTCAAATTTCTGCTGGTCGTGCCTGATTTGCCTACTTCTTCTAACCGTGTTGTTTGCCAAATTTGTCATCGTTTTGGTCATACTGCATTGGACTGTTATCACCGCATGAATCAAGATTACAGATGTCGCCATTCTCCTGCACATTTAGCTGCTCTTGCCGCTAATTGTACTGCTAAAGCGTCACCAAATCAGCCATCTACTCCTACTGGTTCTCAGATTTGGTTATCTGATTCAGGTTGTAATGCGCACTTAACTTCAGATCTTGCCAAAATTGTTGTTTCTTCTGACTACAATGGACAAAGTGTCGGGACGTGTACTCTTCCATGGACCTAG

Coding sequence (CDS)

ATGATGGCTAATTTTGTTCCTCGTGGTCATGGCGGTGGCGTAATCATAACGGTGGTGGCCGTAGTCAAATTTCTGCTGGTCGTGCCTGATTTGCCTACTTCTTCTAACCGTGTTGTTTGCCAAATTTGTCATCGTTTTGGTCATACTGCATTGGACTGTTATCACCGCATGAATCAAGATTACAGATGTCGCCATTCTCCTGCACATTTAGCTGCTCTTGCCGCTAATTGTACTGCTAAAGCGTCACCAAATCAGCCATCTACTCCTACTGGTTCTCAGATTTGGTTATCTGATTCAGGTTGTAATGCGCACTTAACTTCAGATCTTGCCAAAATTGTTGTTTCTTCTGACTACAATGGACAAAGTGTCGGGACGTGTACTCTTCCATGGACCTAG

Protein sequence

MMANFVPRGHGGGVIITVVAVVKFLLVVPDLPTSSNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQIWLSDSGCNAHLTSDLAKIVVSSDYNGQSVGTCTLPWT

Homology

[Close]

BLAST of Moc11g13720 vs. NCBI nr
Match: TYK06402.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 35  SNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQI 94
           + R+ CQICH+ GH ALDCY+RMN  Y+ RH P+ LAA+  N    +  +Q S    +  
Sbjct: 226 NGRIFCQICHKQGHGALDCYNRMNFSYQGRHPPSQLAAMTVN----SMNSQISGENTNNF 285

Query: 95  WLSDSGCNAHLTSDLAKIVVSSDYNGQSVGT 126
           WL DSGCN H+T++LA + +S++YNG+   T
Sbjct: 286 WLPDSGCNVHMTNELANLNLSNNYNGEETVT 312

[Close]

BLAST of Moc11g13720 vs. NCBI nr
Match: KAA0050146.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 35  SNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQI 94
           + R+ CQICH+ GH ALDCY+RMN  Y+ RH P+ LAA+  N    +  +Q S    +  
Sbjct: 226 NGRIFCQICHKQGHGALDCYNRMNFSYQGRHPPSQLAAMTVN----SMNSQISGENTNNF 285

Query: 95  WLSDSGCNAHLTSDLAKIVVSSDYNGQSVGT 126
           WL DSGCN H+T++LA + +S++YNG+   T
Sbjct: 286 WLPDSGCNVHMTNELANLNLSNNYNGEETVT 312

[Close]

BLAST of Moc11g13720 vs. NCBI nr
Match: KAA0067173.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 9.8e-14
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 35  SNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQI 94
           + R+ CQICH+  H ALDCY+ MN  Y+ RHSP+ LAA+A N    +  +Q S+   +  
Sbjct: 315 NGRIFCQICHKQEHGALDCYNHMNFSYQDRHSPSQLAAMAVN----SMNSQISSENTNNF 374

Query: 95  WLSDSGCNAHLTSDLAKIVVSSDYNGQSVGT 126
           WLSDSG N H+T++LA + +S++YNG+   T
Sbjct: 375 WLSDSGYNVHMTNELANLNLSNNYNGEETVT 401

[Close]

BLAST of Moc11g13720 vs. NCBI nr
Match: KAA8519478.1 (hypothetical protein F0562_013734 [Nyssa sinensis])

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-13
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 36  NRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQIW 95
           NR  CQIC++ GH ALDCYH+M+  Y+ RH PAHLAA+A         NQ   P   Q W
Sbjct: 135 NRPQCQICNKLGHLALDCYHKMDFAYKGRHPPAHLAAMAVT-------NQDIAP-DHQTW 194

Query: 96  LSDSGCNAHLTSDLAKIVVSSDYNGQS 123
           L+DSG N H+T+DL+ + +S  Y+G++
Sbjct: 195 LADSGANNHITADLSNLRISEPYHGEN 213

[Close]

BLAST of Moc11g13720 vs. NCBI nr
Match: XP_016902697.1 (PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 35  SNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQI 94
           + R+ CQICH+ GH ALDCY+RMN  Y+ +H P+ L A+A N    +  +Q      +  
Sbjct: 238 NGRIFCQICHKQGHVALDCYNRMNFSYQGQHPPSQLVAMAIN----SMNSQIFGENTNNF 297

Query: 95  WLSDSGCNAHLTSDLAKIVVSSDYNGQSVGT 126
            LSDSGCN H+T++LA + +S++YNG+   T
Sbjct: 298 LLSDSGCNVHMTNELANLNLSNNYNGEETVT 324

[Close]

BLAST of Moc11g13720 vs. ExPASy TrEMBL
Match: A0A5A7U7J4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001750 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.3e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 35  SNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQI 94
           + R+ CQICH+ GH ALDCY+RMN  Y+ RH P+ LAA+  N    +  +Q S    +  
Sbjct: 226 NGRIFCQICHKQGHGALDCYNRMNFSYQGRHPPSQLAAMTVN----SMNSQISGENTNNF 285

Query: 95  WLSDSGCNAHLTSDLAKIVVSSDYNGQSVGT 126
           WL DSGCN H+T++LA + +S++YNG+   T
Sbjct: 286 WLPDSGCNVHMTNELANLNLSNNYNGEETVT 312

[Close]

BLAST of Moc11g13720 vs. ExPASy TrEMBL
Match: A0A5D3C579 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001010 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.3e-15
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 35  SNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQI 94
           + R+ CQICH+ GH ALDCY+RMN  Y+ RH P+ LAA+  N    +  +Q S    +  
Sbjct: 226 NGRIFCQICHKQGHGALDCYNRMNFSYQGRHPPSQLAAMTVN----SMNSQISGENTNNF 285

Query: 95  WLSDSGCNAHLTSDLAKIVVSSDYNGQSVGT 126
           WL DSGCN H+T++LA + +S++YNG+   T
Sbjct: 286 WLPDSGCNVHMTNELANLNLSNNYNGEETVT 312

[Close]

BLAST of Moc11g13720 vs. ExPASy TrEMBL
Match: A0A5A7VGG0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00280 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.7e-14
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 35  SNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQI 94
           + R+ CQICH+  H ALDCY+ MN  Y+ RHSP+ LAA+A N    +  +Q S+   +  
Sbjct: 315 NGRIFCQICHKQEHGALDCYNHMNFSYQDRHSPSQLAAMAVN----SMNSQISSENTNNF 374

Query: 95  WLSDSGCNAHLTSDLAKIVVSSDYNGQSVGT 126
           WLSDSG N H+T++LA + +S++YNG+   T
Sbjct: 375 WLSDSGYNVHMTNELANLNLSNNYNGEETVT 401

[Close]

BLAST of Moc11g13720 vs. ExPASy TrEMBL
Match: A0A5J4ZP84 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_013734 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.1e-14
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 36  NRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQIW 95
           NR  CQIC++ GH ALDCYH+M+  Y+ RH PAHLAA+A         NQ   P   Q W
Sbjct: 135 NRPQCQICNKLGHLALDCYHKMDFAYKGRHPPAHLAAMAVT-------NQDIAP-DHQTW 194

Query: 96  LSDSGCNAHLTSDLAKIVVSSDYNGQS 123
           L+DSG N H+T+DL+ + +S  Y+G++
Sbjct: 195 LADSGANNHITADLSNLRISEPYHGEN 213

[Close]

BLAST of Moc11g13720 vs. ExPASy TrEMBL
Match: A0A1S4E394 (uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.8e-13
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 35  SNRVVCQICHRFGHTALDCYHRMNQDYRCRHSPAHLAALAANCTAKASPNQPSTPTGSQI 94
           + R+ CQICH+ GH ALDCY+RMN  Y+ +H P+ L A+A N    +  +Q      +  
Sbjct: 238 NGRIFCQICHKQGHVALDCYNRMNFSYQGQHPPSQLVAMAIN----SMNSQIFGENTNNF 297

Query: 95  WLSDSGCNAHLTSDLAKIVVSSDYNGQSVGT 126
            LSDSGCN H+T++LA + +S++YNG+   T
Sbjct: 298 LLSDSGCNVHMTNELANLNLSNNYNGEETVT 324

The following BLAST results are available for this feature:

BLAST of Moc11g13720 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06402.1	1.5e-14	46.15	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0050146.1	1.5e-14	46.15	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0067173.1	9.8e-14	46.15	retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon p...	[more]
KAA8519478.1	1.7e-13	48.28	hypothetical protein F0562_013734 [Nyssa sinensis]	[more]
XP_016902697.1	1.4e-12	43.96	PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]	[more]

BLAST of Moc11g13720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g13720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7J4	7.3e-15	46.15	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3C579	7.3e-15	46.15	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VGG0	4.7e-14	46.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5J4ZP84	8.1e-14	48.28	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_013734 PE=4 SV=1	[more]
A0A1S4E394	6.8e-13	43.96	uncharacterized protein LOC107991825 OS=Cucumis melo OX=3656 GN=LOC107991825 PE=...	[more]

BLAST of Moc11g13720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g13720.1	Moc11g13720.1	mRNA