Moc11g12570 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g12570
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transposon Ty3-I Gag-Pol polyprotein
Location	chr11: 9299188 .. 9300422 (-)
RNA-Seq Expression	Moc11g12570
Synteny	Moc11g12570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATGTCATGTGACGAGGAGGTCCTCAGACAAGAGTTTGTCCATGAGTATGAACTCTAACCACCTAAGCTTGTGCTTCGAATTTCCTTTTATACAAAAGAAAGTCAAAGTTATTAAAACTATACAACATCTTACACTGAACTTCTAGCTCGTCACTTCTGTTCTTCCGACCTGAGTTAAAACTTAAGCATCAGAGCGCATTTAGTCGAGCACCACATGGTGCTAGGTTTTGACACACAGGTTGATACGAATCCATTTGTGACCAATTACATATATCAAAGGAGCAATTATTACAAGAAAGGCAAGGAAGATTCAAGAGGCTTTCACACTGCACCTTCAAAAGCTTGTTAATGCACAAGAACCAACAAAGAGTTTTGAGCCCGAATTTATTCATAATGTTACTTCAATGAGTCAAGAAGAGAATGGAGCAAAGATGGCATGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGACAAAAAAAGTGTGCAGATTCGTGAACAGGTGCCTTTGCAGATTGCACCTCTTTGGAGTTTGTGAAGTCAAAAGTTGTCAAACCATATCCAAATGTGAAGCGCCTCCTACAGCACATAGATAAGACCATTTGAAGCATGACTACATTTTCTGATCCGCATTTAAGTGTCTAGAATGATGTGCAATCAAGTTTTAATTTGCATGTCTTATTTTCTACAATTTGCATTAAGTAGTATTTTGAAAAATCTTTGGTGTTCTTATGTTGAACGACCATTTGGCCTATTTAAAGGCTTGTAATGCTCTTGTTATGGATAACTTAAGATTAAAACATATTGAAATTCAAGAACTTTTGTTCCTTAACACTTTTGGTGTTGCTTCTTTCAAATCTTGCTTTAGGTTTGATGTTAAACCGATTCATTGGATTAGTCTCGATCAAGCTAATTCTGGAGTGAGTCGTCTTAGGATCTAGGAGTGACCATCGTAGATTCTAAGTCCGATCTAAGAGTGATTCATCTTCTAACCTTACTCTTGGTTGGAATCATTCGGTAAGTTAGTCGTTTTTGTGAATGTTTGCAAGGATCCTAGAAGGACCTCTAGCTTTGTAAACCCGAGCAACCTTGGCGCTTATCACAGGTACTACCTCAGGCGAGTGACGCTCTGCCGCATCAGCTCAGATCACCGAGGATCCTCAGCCAAATCTGCCAGCCATGTCACCTTGCCATCAACAACTATGAATAGTGATTCATACACACAATAA

mRNA sequence

ATGCCCATGTCATGTGACGAGGAGGTCCTCAGACAAGAGTTTGTCCATGACTCGTCACTTCTGTTCTTCCGACCTGAGTTAAAACTTAAGCATCAGAGCGCATTTAGTCGAGCACCACATGGTGCTAGAAAGGCAAGGAAGATTCAAGAGGCTTTCACACTGCACCTTCAAAAGCTTGTTAATGCACAAGAACCAACAAAGAGTTTTGAGCCCGAATTTATTCATAATGTTACTTCAATGAGTCAAGAAGAGAATGGAGCAAAGATGGCATGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGACAAAAAAAGTGTGCAGATTCGTGAACAGGATCTAGGAGTGACCATCGTAGATTCTAAGTCCGATCTAAGAGTGATTCATCTTCTAACCTTACTCTTGGTTGGAATCATTCGGTACTACCTCAGGCGAGTGACGCTCTGCCGCATCAGCTCAGATCACCGAGGATCCTCAGCCAAATCTGCCAGCCATGTCACCTTGCCATCAACAACTATGAATAGTGATTCATACACACAATAA

Coding sequence (CDS)

ATGCCCATGTCATGTGACGAGGAGGTCCTCAGACAAGAGTTTGTCCATGACTCGTCACTTCTGTTCTTCCGACCTGAGTTAAAACTTAAGCATCAGAGCGCATTTAGTCGAGCACCACATGGTGCTAGAAAGGCAAGGAAGATTCAAGAGGCTTTCACACTGCACCTTCAAAAGCTTGTTAATGCACAAGAACCAACAAAGAGTTTTGAGCCCGAATTTATTCATAATGTTACTTCAATGAGTCAAGAAGAGAATGGAGCAAAGATGGCATGGGAAAAGTTGTCTATTTTGAGAGATGGCACGGAGGACAAAAAAAGTGTGCAGATTCGTGAACAGGATCTAGGAGTGACCATCGTAGATTCTAAGTCCGATCTAAGAGTGATTCATCTTCTAACCTTACTCTTGGTTGGAATCATTCGGTACTACCTCAGGCGAGTGACGCTCTGCCGCATCAGCTCAGATCACCGAGGATCCTCAGCCAAATCTGCCAGCCATGTCACCTTGCCATCAACAACTATGAATAGTGATTCATACACACAATAA

Protein sequence

MPMSCDEEVLRQEFVHDSSLLFFRPELKLKHQSAFSRAPHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILRDGTEDKKSVQIREQDLGVTIVDSKSDLRVIHLLTLLLVGIIRYYLRRVTLCRISSDHRGSSAKSASHVTLPSTTMNSDSYTQ

Homology

[Close]

BLAST of Moc11g12570 vs. NCBI nr
Match: TYK08102.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-19
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 39  PHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILR 98
           P   RKA+KIQEAFTLH+QKL NAQ  TK+FE +F++NV+S SQEE+G KMA EKL  L 
Sbjct: 554 PITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLE 613

Query: 99  DGTEDKKSVQIREQDLGVTIVDSKSDLRVIHLLTLLLVGIIR 141
           DGT ++K    RE     TI+DSK DLRVIH LT LLVGIIR
Sbjct: 614 DGTGNEK----RE-----TIIDSKFDLRVIHPLTKLLVGIIR 646

[Close]

BLAST of Moc11g12570 vs. NCBI nr
Match: KAA0048153.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-18
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 43  RKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILRDGTE 102
           RKA+KIQEAFTLH+QKL NAQ  TK+FE +F++NV+S SQEE+G KM  EKL  L DGT 
Sbjct: 471 RKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMEREKLCNLEDGTG 530

Query: 103 DKKSVQIREQDLGVTIVDSKSDLRVIHLLTLLLVGIIR 141
           ++K    RE     TI+DSK DLRVIH LT LLVGIIR
Sbjct: 531 NEK----RE-----TIIDSKFDLRVIHPLTKLLVGIIR 559

[Close]

BLAST of Moc11g12570 vs. NCBI nr
Match: KAA0063387.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-18
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 39  PHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILR 98
           P   RKA+KIQEAFT+H+QKL NAQ  TK+FE +F++NV+S SQEE+G KMA EKL  L 
Sbjct: 614 PITKRKAKKIQEAFTMHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLE 673

Query: 99  DGTEDKKSVQIREQDLGVTIVDSKSDLRVIHLLTLLLVGIIR 141
           D TE++K    RE     TI+DSK DLRVIH LT LLVG +R
Sbjct: 674 DDTENEK----RE-----TIIDSKFDLRVIHPLTKLLVGTLR 706

[Close]

BLAST of Moc11g12570 vs. NCBI nr
Match: KAA0067206.1 (hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-15
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 39  PHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILR 98
           P   RKA+KIQEAFTLH+QKL NAQ   K+FEP+F++NV+S SQEE+  KMAWEKL  L 
Sbjct: 289 PITKRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYNVSSASQEEHEIKMAWEKLCSLE 348

Query: 99  DGTEDKKSVQ 109
           DGT D+KSVQ
Sbjct: 349 DGTGDEKSVQ 358

[Close]

BLAST of Moc11g12570 vs. NCBI nr
Match: TYK02449.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 7.9e-14
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 39   PHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILR 98
            P   RKA+KIQEAFTLH+QKL NAQ  TK+FE +F++NV+S SQEE+G KMA EKL  L 
Sbjct: 1433 PITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLE 1492

Query: 99   DGTEDKKSVQ 109
            DGT ++KSVQ
Sbjct: 1493 DGTRNEKSVQ 1502

[Close]

BLAST of Moc11g12570 vs. ExPASy TrEMBL
Match: A0A5D3C9X5 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002630 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-19
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 39  PHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILR 98
           P   RKA+KIQEAFTLH+QKL NAQ  TK+FE +F++NV+S SQEE+G KMA EKL  L 
Sbjct: 554 PITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLE 613

Query: 99  DGTEDKKSVQIREQDLGVTIVDSKSDLRVIHLLTLLLVGIIR 141
           DGT ++K    RE     TI+DSK DLRVIH LT LLVGIIR
Sbjct: 614 DGTGNEK----RE-----TIIDSKFDLRVIHPLTKLLVGIIR 646

[Close]

BLAST of Moc11g12570 vs. ExPASy TrEMBL
Match: A0A5A7TX19 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00520 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.2e-19
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 43  RKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILRDGTE 102
           RKA+KIQEAFTLH+QKL NAQ  TK+FE +F++NV+S SQEE+G KM  EKL  L DGT 
Sbjct: 471 RKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMEREKLCNLEDGTG 530

Query: 103 DKKSVQIREQDLGVTIVDSKSDLRVIHLLTLLLVGIIR 141
           ++K    RE     TI+DSK DLRVIH LT LLVGIIR
Sbjct: 531 NEK----RE-----TIIDSKFDLRVIHPLTKLLVGIIR 559

[Close]

BLAST of Moc11g12570 vs. ExPASy TrEMBL
Match: A0A5A7V8R2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00160 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 62/102 (60.78%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 39  PHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILR 98
           P   RKA+KIQEAFT+H+QKL NAQ  TK+FE +F++NV+S SQEE+G KMA EKL  L 
Sbjct: 614 PITKRKAKKIQEAFTMHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLE 673

Query: 99  DGTEDKKSVQIREQDLGVTIVDSKSDLRVIHLLTLLLVGIIR 141
           D TE++K    RE     TI+DSK DLRVIH LT LLVG +R
Sbjct: 674 DDTENEK----RE-----TIIDSKFDLRVIHPLTKLLVGTLR 706

[Close]

BLAST of Moc11g12570 vs. ExPASy TrEMBL
Match: A0A5A7VL78 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00080 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 39  PHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILR 98
           P   RKA+KIQEAFTLH+QKL NAQ   K+FEP+F++NV+S SQEE+  KMAWEKL  L 
Sbjct: 289 PITKRKAKKIQEAFTLHVQKLENAQREIKNFEPKFLYNVSSASQEEHEIKMAWEKLCSLE 348

Query: 99  DGTEDKKSVQ 109
           DGT D+KSVQ
Sbjct: 349 DGTGDEKSVQ 358

[Close]

BLAST of Moc11g12570 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-14
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 39   PHGARKARKIQEAFTLHLQKLVNAQEPTKSFEPEFIHNVTSMSQEENGAKMAWEKLSILR 98
            P   RKA+KIQEAFTLH+QKL NAQ  TK+FE +F++NV+S SQEE+G KMA EKL  L 
Sbjct: 1433 PITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLE 1492

Query: 99   DGTEDKKSVQ 109
            DGT ++KSVQ
Sbjct: 1493 DGTRNEKSVQ 1502

The following BLAST results are available for this feature:

BLAST of Moc11g12570 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08102.1	2.1e-19	63.73	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0048153.1	1.1e-18	64.29	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0063387.1	2.4e-18	60.78	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067206.1	4.2e-15	67.14	hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]	[more]
TYK02449.1	7.9e-14	65.71	F15O4.13 [Cucumis melo var. makuwa]	[more]

BLAST of Moc11g12570 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g12570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9X5	1.0e-19	63.73	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TX19	5.2e-19	64.29	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63...	[more]
A0A5A7V8R2	1.1e-18	60.78	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VL78	2.0e-15	67.14	RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BWE8	3.8e-14	65.71	F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4...	[more]

BLAST of Moc11g12570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g12570.1	Moc11g12570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding