Moc11g12260 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g12260
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	cleavage and polyadenylation specificity factor subunit 6
Location	chr11: 9024208 .. 9034555 (-)
RNA-Seq Expression	Moc11g12260
Synteny	Moc11g12260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAAGGTGAGGGAGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATAGGAATGAGGCGATTTCTGCCGTTGCTGATGAGGGTTTCTTGGGCGAAGATGAGGATGAGTATGAGGACCTCTACAACGATGTTAATGTTGGGGAGGGGTTTCTTCAGTCGTTGAGGAAGAATGATGATTTGGGATTCAGGAACGAGGAGGAGCCGCCGAAGATTGAGCCTCCTGCAACTTTAGCACCCAGTTCTGGTGCTTCGATACCTGGTGTTGGCGGAGGTGCGACTGAAGTTGCTAGTTTAGGAGATGGCGGGCACAGTGTTCCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATGAGAGGTGGGGCAGGATCGGGGCCGCCGATGGGTGGGGGAGGCGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAACCAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCCGTGCATCAGGCTCCGCAACAGCCACAGCCACAGCCACAGCAACAGCAACAGCAACAGCAACCGCAACAGCACCACCATCAACCACTGCACAGCGGAGTTTTAGGAAATCCCGGGAGCGTAGAAAATGACGGTTTGCTAAGGCAAGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTATGGTAATATGGGGAGTGCAGGGGGAGGTGGCGGTGGAACGATTTTGTTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGTGGAGCTCTGTAAGTATGGTCCTTTAAAGGAGGTTAAATTTTTTGACGAGAAAGCTAGTGGGAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCCACGGCTTGTAAGGAGGGGATGAATGGGCATGTTTTTAATGGCCGGCCATGCGTTGTTGCCTTTGCATCACCATTTAGCGTTAAGAAGATGGGAGAAGCCCAAGTAAATAGGAACCAACAGATTGCCCAAGCTGCTAATCCTCAAGCAAGGAGAGGTCCTAATGATGCCGTAGGTAAAATTGGTGGAAGTAACATTCAAACGGGTGGTAATTACCAAGGTGGTGATAACAACAGAGGTTCTGGGAGAGGTAATTGGGGGAGAGGCAATGCCCATGGAATGGGAGGTAGAGGACCAGCTGGCCCGATGAGGAATAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGGAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCCACCCCTCCTTTGTTGCATCCTCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGACGAATGGGCACCTATGGTGGTTTTCCTGGAGCTCCCGCTCCCCCTTTCTCTGGGATTTTATCGTCATTTCCACCTGTTGGGGGTGTTGGTCTTCCTGGAGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGAATGATGCCAACATCGGGTGTGGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGTAGTGAAGACCATGGTGGAGGGAGAGCAGGAGAGTCTAGTTATGGTGAAGAAGCTGGGTCTGACCAACAATACGGTGAAGGGAGTCATGAAAGGGGGGCATGGGCAAATTCTGCAAAGGAGAAAGATAGAGGCTCTGAAAGGGATTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGACAGAGATGTTGGATATGATAGAGAGAGGTCCAAAGAAAAAGAACCAGGTCCTGACCATGATTGGCCTGATAGAAGGCCTCGAGATGATAGAGATATAGGTCGAGAAAGGGATAAGGATAGGGATCGGGATCGGGATAGGGAACGTTCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGACAGGGATAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGAGAGAGATATTCAGATCATCATAGGTATAGAGACCGTGAACCAGAGCATGAGGATGAGTGGGAAAGGGGGCGATCGTCAAGGACTCATAGCAAGTCCCGATTATCACAAGAAGAGGAAAATCGTTCTAGAACGAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAGTAGCTGAATCATTCAGCATACCTGCTTAAAACTATATAGTATGGCTTTCCATGTTCATTTGGGTTCTCTCCCAGATGGGCTCTTTGATTCATCATTGCCCTTTTGCCTCTGCTGTTTATTGTCTGAACTCCGGAGTATGTCTTCTACCTACAGGAGCATGGTCTGATTTGTAGCAAAAAAAAGGTGAGTTCGTCCAATTTTTTTCCTTTTCCCAAAATTTTCAAATTTAATTTCTGGTGGTTTTTTAGGTCTCGTTCTATGGTCTTTAAATATGGGCTTGCTAACTATCGAACTTGTTCAAAACTTATTCTCTATAGAAATAGATGTTTACTCTATTGATGCTCTAATGAAATGTCTTGTTAACCATTAAAAAAATGTTGTTATTGCAGCAAATAGTAGTTTTTGGGTTCTTGGAACTGATATCATTGTTGATTTTACCACCATACTTGCTCCTTCTATTATTGTTTGGTACTATTTATTGATTTTATTTCCAATAGTTTTACATTTCCATTAGATAATTATAAATGCAAGCATTTTTTTATCCTATGTTAGATTGAGATACTCAAGACATGGACTCATTGACGTCTACATTTTATATTAAAAAATTCAGGACACAGACATGCTTAGGACACTTTTTTTTGAAGTTTTTAATTTATATTTGAATGTTTCATACATTTCCATGATTTCCACATCTAAAAGTATGTTTAACTTTGTATGACATTTGTTTTAGATATGTGAAAGAAGTAGTAAAATATGCAATACTTCAATAAAAAAGGTTAATATAGTTTTGGTCCCAAAAGTTTGCCCTTTTTTCTAATTTTTTTAAGTATAAAAAGTTATAGATTAGTTGCTCTAATTCTAGTATGTTCTAAATTCAATCCCTATGGTTAAAATCTGAGTTAGGCATAAATGAAGAAATGGCTTGATCTTTTTTATTATCGATTAATACTTATGTTGTATAATTAATAGTTTATAACGTGAAGATGGCAGAATGGAACTTATGATATATCAGTCACTAAGTCACTTAGAAATTTAGAAAAGACAGGTTATTGAAGTGTATTACTCAGTAGTTATGAAGTTATACAATTAAAGGAAACCTTATTAGAAAATTTTGAGCATTCAACATTGCAAATTCCAGACAATTAGAAAACCAGTCGTACTGCTTTTTTTTTTCTTTGTTTTTTGTTGCAGGATTTAATGGTTAGGAAGGACTGAATTTAGGACTCATTAAAATCTGTGGGACTAAAATTGGACTTCTATATCAACCATCATGGGTACTCATTAGTCCAAAGGGGCTAGAGTTAATTAAGAGGGAATGAGTTTAAACCCTATGATGGTCACCTACCTGAGGCATTAGTAATTCCTATGTGTTTTCAAGCACCAAATGTTGTAGGATCAGGCGGTTGTCTCGTGAGAACACTCACGGATATAAAAAAAAGGACTTCTATATCTTAGGGTTCAAATTAAAAATGGTGCTCAAATTTTGGTACCAGGACTATATTTTAATCACTAATTCTTAATGATGCAACGCCTCATAGCAAAAGGTTTTAAAAGAGTCTAAGGTCAAATAAACGTATTTCTAAATAACTAAGCATCTTTTTAAGAAAGAAATTTAACATTAGTTATGTTTATATCCATGCCTTTTCTTTTACAAGAAACAAGAACTTTTCTGATAATTGAAAAGTTATGATCTAACAACTCTTTCTAGGAGTATAAACCCCAAAACCAAAACTAAAAATTACGTACGATCTAAACAAATTACACTTCCCAACAATAATTAACTCCAAAATCCAAGTGCGAAAATTTGAGTGAGAGAGCACCCCAGTAAGCCACCAGGATCTATGTCAAGCCATGTTTTCCTCCTCAGAAACCCTTTTATCCCATCAAAAGTTCGATTTCTTTCAAAACCGAATGCCCAAACTACGGATTTAACAATGGAGACCCATAAACTCTGGCTTTTCTTTTAAGACTGTGACCACTAGGAAGACTAAGGATTAGTTTCTGCTCTGAGATCGCACACCCAAGAAACATCAAAGATCTGAAAAAGCTTTCAACAAGCATATGCTTAAAACAGTGAAAATACAGACGATGAATGTCCTCCCTAGCTTTAAGACAAAGAACAGCAACTTGAACTCAAGTACCACCTTGGCTACTTTCTTTGAACCTTATTCGCGGTGTTCAGGCTTTCAAAAAATACCAACTCAACTAGAAGACTTACCTTCCTTGGATAATTTGTCTTTGACAAGGTTGAAACGAAAAATTTTGGCAAGTAAGATGTTGCATCTAGCTTAAACAATGATCTTACTGCAAAAGATCCTGATTAATCCAAAATCCACCTTCTCGCATCTTTCTTCCTAGGGAGAGACATCCATTCTAATAATCCCAAAATATTACAATATTTGGCTACTTGCTCGTCCCTTAAACAACTTCTAACAGTAACTCTTCACGAACATGAACACACACTTATCACATGCGTCTACAACCAACAAGTCCTTTTGATTTGATAATTCAAAAGTGCTGGGAAAACAAAGAGCGATTGATTTCCAATCCAAGAGTTTTTCCAAGAAAGTCTCTTCGTTCACCAATCTTGATTAGCAAAAACTTATTATGACTTCTTCTTTTTTCTTAACCTCAACACATTCCATCAACGGCTTTTACAACCTTTAGAGTTCTTCATTTTTGTGAACCACCTGGAATGATCACTTTCAAGATTTATTATTCTACTACTAAATCTTGTAACTATGTGGATTAATTCTTTTAATAAAAGAGAACAAATAAATAAAAGTAGGGTTAGACAGTTGTCCTGCAAGAATAGTCAAGGTACGCACAGGTTGGTCCAAATAGATAGGATATAAAAAATTGTATTTAGTATGTCTCGGGCACATGTCAAAGGTATTTAATATGTGTACAAAACATTTCTTTTCATAGGAAATGTGTATGATGCATGACTACTGTATTCAACAAGTGTATATATGTCAATATGTTTGGCAAGCATACGATATGTGTGCAATGGTGTGACTGATATATTCTGAATAAAAATGCATCACGAAAAAACAATGTTCATGTTTCATAGGTTTCCAATTTTCATGCTACATTACCCATTGAGACCATTGTTCTTATTGGGGTAATCTTGGTTGGTTTATGTGTTTTCTTATGTACCCAACCCAAATAAAGAACGAGTTGCTCAACTTTTTTTTGTCTGAATTGATGTGCTTATTTTTATTTATTTTCCTGAAGCTTCATTCTTTCTCTCCTTTTATCTGTTCCAGGGCCAAAGTTTTACATGATTTAAATGGAACACTTCGATTTATTCTACTTTTAGACGTTTGATGTCAAATTGGAATTAATACATACATATTTGTTGCTTTATGTTGACATACTAATTACCAATAGAAGAGCCATAACTTTGTTGCTGATCGGAAGTACCTATCATTTCCCTTTTTTTTTTGTAGCTTTAAGGACATTTGATACCGAGGATTTCATTCAATGCAACAACAGTTGGTTCAGGGATGACAGGGACCTTTAAATTCAAGTCTGCCAGAGAATACCCATGCATGGCAACTGCAATATCTATTCGCTCTATTAATTTGATAAGGAAACTCTTGGTTTAAACTTCTCACGTTTCTTTTGAATGATGTTTCTTGACTTGGCACTTGATGACATTGATATTCTTGTTGTAATGCCTAAATATTGCTGGAGTCCAGACCATGTCTAAATGTTTTCCGACATGTAATGGCGTACTTTGTTGTTAGAGTATCTTAGCCTGGAGGATGTTGTGATGTGCGTTATTCTGTTTTATAAGCTGTTGTATCATATATTCACACCTCTTTTCACCCTTTTTTGGGGGTTTTTTTTTTTATACCACACTGTAGCCGATTCTGTTGTGAAGATGTAGAGCTAACCATTCTTTTAGAGCTGAAGGTTGTATTTACTCGATACTTGTATGTACCTGTTACCAATTGACTAGATGTAGCTCTTCACAAGGCTGTATGTACTCAATACTTGTATGTATTGACTAGATGTAGTTTCAGAGGTTGTATGTACACAATACTTGTATGTACCTGTTATGTTATCAATTGAGTAGATTTAGTTATGGATATCTGTTCATGGAAAACTGTATTATAGCTGCTTGTTATTTTGGACTTTGGACATATTTTGGACAGGTTTCACCCATTCTTCATGGAAATTGTTCATCCTAATAGCAACTAGTCTATGATTATCTTATATAGAGAAACTTTGTAGATGGAAGAAGTATGCAAATTGATGCATATTCCATCATGGAAACTGTTTTATAGCTGCTTGTTATTTTGGACTTTGGACATATTTTGGACAGGTTTCTCCCATTCTTCATGGAAATTGTTCATCCTAATAGCAACTAGTCCATGATTATCTTATGTAGAGCAACTTTGTAGATGGAAGTATGCAAATTGATGCATGTACTATCATATTGTATCACAGGCATTGAGGAATCATCTCTAAATATAGAGAACTGAGAAGTTTGTATTAGGAGTGATCAAGGAGATCTGTATTAACAAAAAGGATGTAGATAAAAGATGTAGATGAGATTAAGTTCGAATTAGGTCTGATCGAGATGATAGAGATGCAATTAATCATGTTGAGAGATGGAATTAAGCACGTCGAGAATTTTAGTGTTTTTTGTTTGGGTCAAGAGAAGTGGCGATCTTTGAATGTATGAGATTCCTCTAATTAGTACTTCAAGAGTGGATTTTGTAATGTTAATACGGTAGAATCTATCAATAGTGTCACAAGTTGGTGTGTTTATCTTATATCTAGTTTAATATTGTATTGCTAATTTGAACATGGCTCGACATCGAGTACATTTATACGGGGTAAAAAAGTTTTAATATTATATTTGATGGGTTAGGAGTGCATTCATAATTTAACATATCAAGACAAATTGTGCACGGTTTCAAATATGTTATCTCTATTAATCACCTTGTCCATTTTCGTTCTTTTCTAATATTTGTCTATTTGGTTCCCTAATAGGTCGTTTTGTTAATTATGTTAGTTTAATAATTATGCCACAAAACGCTTGAATTTGGTTGAATCAGCTTTTTCATGTGATAATAATACTACTGACAAAGTTAATTATACAAATCAATCAAGTTTAGTTCATTTGTTCCCCACGTGTTGTACTAAAAGTTTTCTTGTCATTGTCTTAATATGTTAATAAAACAATAAATATTTAATAACACATTATTTTTATGTTAATAACATTTTTTTTACGTAATGACCTACTTGAGAATTTTTATTATATTAAGGGTAAATTAAGGATTTTAAAAAATTAAGGACTAAATTGAGAAAACCCATAAAGATTGGGGGACTATTGTATATACTTCGTTTTTTTTTAACTTAAATTATAAGTTTGTATCCAGTATAATTGATTTCTAAACTTTCAAGATTTTTGTCTAATTAAGTCTTTGAACTTTAAAAATGTTTAATAGAACCTTCAACTTTCAATTTTATGCATAACAAGTCCATGAGTTTTAAAAAATTTCAATTAGATCATGACTAATTAAATACAAAATTCAAAATTCAAAAACCTTTCGGACATAAAATTAGTTTAGAGATGTGTTAGACACTCATGCAAATTCAATCACATGTATTATTAGATACAAAATTGAAGGTTTTTGAATGTGTTAGACATCTTTTAAAAGTTCATAAACTTATTCAATGCAAACCCGACTAAACTTGGAATCTAATATTTATAAATAAAAAATTAATCTAATTAAAAAAAGTTAGTCAAAAAAAAATATTTTTTTTACTACAAAGTTATACCTAACTTAATTTTAATTGTCATTAAAAAATAGTATGAGTTTTGGACTGTTCATCAAAATGAAAGCATAAAATTGACAGTTAACCCAGCGCAAGTTAGCTCTGAAGTTGAAGAAACTAAAATTCCAGGATATTCACGCGCGTTTTCCAGATTAGGGTTTCTCTCTCTCTCTCTTGCAGTTCCATAATTGGAGTGCGAGCGATCGTTGATCACTATCTGCTTTTGCTTGTAAGTTCTTAAATCGACTTCGTGATGTTACTTGCTTTTAATTTCTGAAGAATTAAACTTTTGAATGAATTGCGAAAGCCCGTAGAGATGGATGAAGGTGAGGGAGGGTTTGGTGAGGGTGTGGATCAGATAGATCAGTTTCATCGGAACGAGGCGATTTCTGCAGTTGCTGATGAGGGTTTCTTAGGGGAAGATGAAGATGAATACGAGGACCTCTACAACGATGTTAATGTTGGGGAGGGGTTTCTTCAGTCTCTGAGGAAGAACGATGATTTGGGATTCAAGAACGAGGAGGAGCCGAAGGTCGAGTCTGCTGCAGCTGTAGCGCCCAATTTGGGGGCTTCAATACCCGGTGTTGGCGGTGCTGCGGCTGAAGTTGTTGCTGGTGTGGGAGATGGCGGGCCGCCTAGGGTTCCGGAGAGACTAAACGAGAGTTACAATCAGATACAAGATTTAAGAACGAATGAGATGGCTATGAGAGGAGGGGCGGGATCGGGGCAGCCGGTGGGTGGTGGAGGTGGAATTAGGGTTGAGTTAGGGCAAGGGAATAAAATCAATGAGTTAGAGGAGCGAAGTAGTAATAACGTAGTTGGGCATCCAGGTCCTCAACAGCATCAACTCCAACCAGCTCAAGGTGGAATTTTGGGAAATGCTGGGAATGTAGAGAATGAAGGTTTGCTAAGGCAAGGTGGTGGGGTGAATGTAAATGGGGTTGGTGGAAATGGGTTTGGTAGCGTTGGGACTGGAGGGGGAGGAGGTGGTGGGACGATCTTGTTTGTTGGTGATTTACATTGGTGGACTACGGATTCAGAGCTGGAGGTGGAGCTCTGCAAGTATGGTGCGGTGAAGGAGGTCAAGTTCTTTGACGAGAAAGCTAGTGGGAAGTCTAAAGGCTATTGTCAGGTTGAATTTTATGATTCATCTGCTGCCTCATCTTGCAAGGAGGGAATGAATGGGCATGTTTTTAATGGCCGGCCATGCGTTGTTGCCTTTGCATCGCCATATAGCATTAAGAGGATGGGAGAAGCCCAAGTAAATAGGAACCAACAGATTGCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTATTGATGCTGCAGGTAAAATTGGTGGAAGTAGCATCCAAACGGGTGGTAATTATCAAGGTGGTGATAACAACAGAGGTTCTGGGAGAGGTAATTGGGGGAGAGGCAATGCTCATGGAATGGGAGGTAGAGGACCAGCTGGCCCGATGAGGAATAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGGAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCCACCCCTCCTTTGTTGCATCCTCAGTCGATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACCTATGGTGGTTTTCCTGGAGCTCCCGCTCCCCCTTTCTCTGGAATTTTATCTTCATTTCCACCTGTTGGGGGTGTTGGTCTTCCTGGAGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGGCACCATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCCGACCCTAGTATGGGTGGATGGGGCAGTGAAGAACATGGTGGTGGTAGAGCTGGAGAGTCTAGTTATGGAGAAGAGGCTGGGTCTGACCAACAATATGGTGAAGGTAGTCATGATAGAGGTGGGTGGGCAAATTCTGCTAAGGAGAAAGATAGAGGCTCCGAAAGGGATTGGTCACAGTCTTCTGATAGAAGGTATCGAGACGATAGAGAGAGATCCAAAGAAAAAGATCCAGGTCCTGACCATGATTGGCAGGATAGAAGGCCACGCGATGATAGAGATGTAGGTCGAGAAAGGGATAAGGATCGTGATCGCGATAGGGAACTTTCTCGAGATTATGAGCGTGGCCATGATCGCGATCGTGATAGAGATCGTGACCGTGATAGGCACAAGGAAGATAGGGACAGGTATTCAGATCATCATAGGTACAGGGACCGTGAACCAGAGCATGAAGATGAGTGGGAAAGGGGGCGATCATCGAGGACTCATAGCAAGTCTAGATTACCACAAGAAGAAGAAAGTCGTTCTAGATCAAGGGATGCTGATTATGGGAAAAGACGGCGGCTTACTTCTGATTAG

mRNA sequence

ATGGATGAAGGTGAGGGAGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATAGGAATGAGGCGATTTCTGCCGTTGCTGATGAGGGTTTCTTGGGCGAAGATGAGGATGAGTATGAGGACCTCTACAACGATGTTAATGTTGGGGAGGGGTTTCTTCAGTCGTTGAGGAAGAATGATGATTTGGGATTCAGGAACGAGGAGGAGCCGCCGAAGATTGAGCCTCCTGCAACTTTAGCACCCAGTTCTGGTGCTTCGATACCTGGTGTTGGCGGAGGTGCGACTGAAGTTGCTAGTTTAGGAGATGGCGGGCACAGTGTTCCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATGAGAGGTGGGGCAGGATCGGGGCCGCCGATGGGTGGGGGAGGCGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAACCAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCCGTGCATCAGGCTCCGCAACAGCCACAGCCACAGCCACAGCAACAGCAACAGCAACAGCAACCGCAACAGCACCACCATCAACCACTGCACAGCGGAGTTTTAGGAAATCCCGGGAGCGTAGAAAATGACGGTTTGCTAAGGCAAGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTATGGTAATATGGGGAGTGCAGGGGGAGGTGGCGGTGGAACGATTTTGTTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGTGGAGCTCTGTAAGTATGGTCCTTTAAAGGAGGTTAAATTTTTTGACGAGAAAGCTAGTGGGAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCCACGGCTTGTAAGGAGGGGATGAATGGGCATGTTTTTAATGGCCGGCCATGCGTTGTTGCCTTTGCATCACCATTTAGCGTTAAGAAGATGGGAGAAGCCCAAGTAAATAGGAACCAACAGATTGCCCAAGCTGCTAATCCTCAAGCAAGGAGAGGTCCTATTGATGCTGCAGGTAAAATTGGTGGAAGTAGCATCCAAACGGGTGGTAATTATCAAGGTGGTGATAACAACAGAGGTTCTGGGAGAGGTAATTGGGGGAGAGGCAATGCTCATGGAATGGGAGGTAGAGGACCAGCTGGCCCGATGAGGAATAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGGAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCCACCCCTCCTTTGTTGCATCCTCAGTCGATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACCTATGGTGGTTTTCCTGGAGCTCCCGCTCCCCCTTTCTCTGGAATTTTATCTTCATTTCCACCTGTTGGGGGTGTTGGTCTTCCTGGAGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGGCACCATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCCGACCCTAGTATGGGTGGATGGGGCAGTGAAGAACATGGTGGTGGTAGAGCTGGAGAGTCTAGTTATGGAGAAGAGGCTGGGTCTGACCAACAATATGGTGAAGGTAGTCATGATAGAGGTGGGTGGGCAAATTCTGCTAAGGAGAAAGATAGAGGCTCCGAAAGGGATTGGTCACAGTCTTCTGATAGAAGGTATCGAGACGATAGAGAGAGATCCAAAGAAAAAGATCCAGGTCCTGACCATGATTGGCAGGATAGAAGGCCACGCGATGATAGAGATGTAGGTCGAGAAAGGGATAAGGATCGTGATCGCGATAGGGAACTTTCTCGAGATTATGAGCGTGGCCATGATCGCGATCGTGATAGAGATCGTGACCGTGATAGGCACAAGGAAGATAGGGACAGGTATTCAGATCATCATAGGTACAGGGACCGTGAACCAGAGCATGAAGATGAGTGGGAAAGGGGGCGATCATCGAGGACTCATAGCAAGTCTAGATTACCACAAGAAGAAGAAAGTCGTTCTAGATCAAGGGATGCTGATTATGGGAAAAGACGGCGGCTTACTTCTGATTAG

Coding sequence (CDS)

ATGGATGAAGGTGAGGGAGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATAGGAATGAGGCGATTTCTGCCGTTGCTGATGAGGGTTTCTTGGGCGAAGATGAGGATGAGTATGAGGACCTCTACAACGATGTTAATGTTGGGGAGGGGTTTCTTCAGTCGTTGAGGAAGAATGATGATTTGGGATTCAGGAACGAGGAGGAGCCGCCGAAGATTGAGCCTCCTGCAACTTTAGCACCCAGTTCTGGTGCTTCGATACCTGGTGTTGGCGGAGGTGCGACTGAAGTTGCTAGTTTAGGAGATGGCGGGCACAGTGTTCCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAACGAATGAGATGGCTATGAGAGGTGGGGCAGGATCGGGGCCGCCGATGGGTGGGGGAGGCGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAACCAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCCGTGCATCAGGCTCCGCAACAGCCACAGCCACAGCCACAGCAACAGCAACAGCAACAGCAACCGCAACAGCACCACCATCAACCACTGCACAGCGGAGTTTTAGGAAATCCCGGGAGCGTAGAAAATGACGGTTTGCTAAGGCAAGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTATGGTAATATGGGGAGTGCAGGGGGAGGTGGCGGTGGAACGATTTTGTTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGTGGAGCTCTGTAAGTATGGTCCTTTAAAGGAGGTTAAATTTTTTGACGAGAAAGCTAGTGGGAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCCACGGCTTGTAAGGAGGGGATGAATGGGCATGTTTTTAATGGCCGGCCATGCGTTGTTGCCTTTGCATCACCATTTAGCGTTAAGAAGATGGGAGAAGCCCAAGTAAATAGGAACCAACAGATTGCCCAAGCTGCTAATCCTCAAGCAAGGAGAGGTCCTATTGATGCTGCAGGTAAAATTGGTGGAAGTAGCATCCAAACGGGTGGTAATTATCAAGGTGGTGATAACAACAGAGGTTCTGGGAGAGGTAATTGGGGGAGAGGCAATGCTCATGGAATGGGAGGTAGAGGACCAGCTGGCCCGATGAGGAATAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGGAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCCACCCCTCCTTTGTTGCATCCTCAGTCGATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACCTATGGTGGTTTTCCTGGAGCTCCCGCTCCCCCTTTCTCTGGAATTTTATCTTCATTTCCACCTGTTGGGGGTGTTGGTCTTCCTGGAGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGGCACCATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCCGACCCTAGTATGGGTGGATGGGGCAGTGAAGAACATGGTGGTGGTAGAGCTGGAGAGTCTAGTTATGGAGAAGAGGCTGGGTCTGACCAACAATATGGTGAAGGTAGTCATGATAGAGGTGGGTGGGCAAATTCTGCTAAGGAGAAAGATAGAGGCTCCGAAAGGGATTGGTCACAGTCTTCTGATAGAAGGTATCGAGACGATAGAGAGAGATCCAAAGAAAAAGATCCAGGTCCTGACCATGATTGGCAGGATAGAAGGCCACGCGATGATAGAGATGTAGGTCGAGAAAGGGATAAGGATCGTGATCGCGATAGGGAACTTTCTCGAGATTATGAGCGTGGCCATGATCGCGATCGTGATAGAGATCGTGACCGTGATAGGCACAAGGAAGATAGGGACAGGTATTCAGATCATCATAGGTACAGGGACCGTGAACCAGAGCATGAAGATGAGTGGGAAAGGGGGCGATCATCGAGGACTCATAGCAAGTCTAGATTACCACAAGAAGAAGAAAGTCGTTCTAGATCAAGGGATGCTGATTATGGGAAAAGACGGCGGCTTACTTCTGATTAG

Protein sequence

MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIPDLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQQQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGVGGNGYGNMGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPIDAAGKIGGSSIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWQDRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD

Homology

[Close]

BLAST of Moc11g12260 vs. NCBI nr
Match: XP_022139595.1 (cleavage and polyadenylation specificity factor subunit 6 [Momordica charantia])

HSP 1 Score: 1346.6 bits (3484), Expect = 0.0e+00
Identity = 704/707 (99.58%), Postives = 705/707 (99.72%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP
Sbjct: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ
Sbjct: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180

Query: 181 QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGVGGNGYGNMGSAGGGGGG 240
           QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGVGGNGYGNMGSAGGGGGG
Sbjct: 181 QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGVGGNGYGNMGSAGGGGGG 240

Query: 241 TILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACKE 300
           TILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACKE
Sbjct: 241 TILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACKE 300

Query: 301 GMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPIDAAGKIGGSSI 360
           GMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGP DA GKIGGS+I
Sbjct: 301 GMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPNDAVGKIGGSNI 360

Query: 361 QTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQG 420
           QTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQG
Sbjct: 361 QTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQG 420

Query: 421 IGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPG 480
           IGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPG
Sbjct: 421 IGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPG 480

Query: 481 VAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYGE 540
           VAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYGE
Sbjct: 481 VAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYGE 540

Query: 541 EAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWQ 600
           EAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWQ
Sbjct: 541 EAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWQ 600

Query: 601 DRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRD 660
           DRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRD
Sbjct: 601 DRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRD 660

Query: 661 REPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD 708
           REPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD
Sbjct: 661 REPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD 707

[Close]

BLAST of Moc11g12260 vs. NCBI nr
Match: XP_038897113.1 (uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida])

HSP 1 Score: 1216.1 bits (3145), Expect = 0.0e+00
Identity = 648/713 (90.88%), Postives = 671/713 (94.11%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           DDLGF+ EE  PK+EPPA + PSSGASIPGVGGGATEVA LGDGGHSV ERVTEGYNQIP
Sbjct: 61  DDLGFKTEE--PKMEPPAPVPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           DLRTNEMA+RGG GSGPP+GGGGGIRVELGQGSKT+ELEERSSNNV  HQA  Q Q QPQ
Sbjct: 121 DLRTNEMAVRGGVGSGPPVGGGGGIRVELGQGSKTSELEERSSNNVVAHQAQHQHQQQPQ 180

Query: 181 QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGV-NVNGVGGNGYGNMGSAGGGGG 240
            Q Q     QHHHQP  SGVLGNPGSVEN+GLLRQGGV NVNGVGGN +GNMGSAGGGGG
Sbjct: 181 PQPQ----PQHHHQPPQSGVLGNPGSVENEGLLRQGGVINVNGVGGNAFGNMGSAGGGGG 240

Query: 241 GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACK 300
           GTILFVGDLHWWTTDAELEVELCKYGPLKEVKF+DEKASGKSKGYCQVEFYDPSAATACK
Sbjct: 241 GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACK 300

Query: 301 EGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPIDAAGKIGGSS 360
           EGMNGH+FNGRPCVVA+ASPFSVKKMGEAQVNRNQQ+AQA NPQARRGP DA GKIGGSS
Sbjct: 301 EGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQMAQATNPQARRGPNDAVGKIGGSS 360

Query: 361 IQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQ 420
           I TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGGRGIMGNGGNGFGQ
Sbjct: 361 IATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQ 420

Query: 421 GIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP 480
           GIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP
Sbjct: 421 GIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP 480

Query: 481 GVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYG 540
           GVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYG
Sbjct: 481 GVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYG 540

Query: 541 EEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDW 600
           EEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDW
Sbjct: 541 EEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDW 600

Query: 601 QDRRPRDDRDVGRERDK--DRDRDRELSRDYERGH---DRDRDRDRDRDRHKEDRDRYSD 660
            DRRPRDDRD+GRERDK  DRDRDRE SRDYERGH   +RDRDRDRDRDR+KEDRDRY D
Sbjct: 601 PDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRERDRDRDRDRDRYKEDRDRYFD 660

Query: 661 HHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD 708
           HHRYRDREPEHE++WERGRSSRTHSKSRL Q+EE+RSRSRD DYGKRRRLTS+
Sbjct: 661 HHRYRDREPEHEEDWERGRSSRTHSKSRLSQDEENRSRSRDVDYGKRRRLTSE 707

[Close]

BLAST of Moc11g12260 vs. NCBI nr
Match: XP_023535463.1 (cleavage and polyadenylation specificity factor subunit 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1211.4 bits (3133), Expect = 0.0e+00
Identity = 649/723 (89.76%), Postives = 677/723 (93.64%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGG G G DQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           DDLGF++EEE PK+EPPA + P+SGASIPG GGG T+V  LGDGGHSV ERVTEGYNQIP
Sbjct: 61  DDLGFKSEEE-PKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           DLRTNEMA+R GAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVA HQAPQQPQPQPQ
Sbjct: 121 DLRTNEMAIRVGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPQQPQPQPQ 180

Query: 181 QQQQ---QQQPQ---QHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYGNMGS 240
           QQ Q   Q QPQ   QHHHQ    GVLGNP SVEN+GLLRQ GGVNVNGVGGNG+GN+G+
Sbjct: 181 QQLQPPAQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGNVGN 240

Query: 241 A----GGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEF 300
           A    GGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEF
Sbjct: 241 AGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEF 300

Query: 301 YDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPI 360
           YDPSAATACKEGMNGH+FNGRPCVVA+ASPFSVK+MGEAQVNRNQQ+AQA NPQARRGP 
Sbjct: 301 YDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARRGPN 360

Query: 361 DAAGKIGGSSIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGI 420
           D  GK+GGSSI TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGI
Sbjct: 361 DTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGI 420

Query: 421 MGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 480
           MGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS
Sbjct: 421 MGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 480

Query: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHG 540
           FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEEHG
Sbjct: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHG 540

Query: 541 GGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSK 600
           GGRAGESSYGEEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRDDRERSK
Sbjct: 541 GGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSK 600

Query: 601 EKDPGPDHDWQDRRPRDDRDVGRERDKDRDRDR--ELSRDYERGH---DRDRDRDRDRDR 660
           EKDPGPDHDW DRRPRDDRD+GRER+KDRDRDR  E SRDYERGH   DRDRDRDRDRDR
Sbjct: 601 EKDPGPDHDWPDRRPRDDRDIGREREKDRDRDRDKERSRDYERGHHDRDRDRDRDRDRDR 660

Query: 661 HKEDRDRYSDHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRL 708
           +KEDRDRYSDHHRYRDREPEH+++WERGRSSRTHSKSRLPQEEE+RSR+RDADYGKRRRL
Sbjct: 661 YKEDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLPQEEENRSRTRDADYGKRRRL 720

[Close]

BLAST of Moc11g12260 vs. NCBI nr
Match: XP_022936014.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita moschata] >XP_022936015.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita moschata])

HSP 1 Score: 1204.5 bits (3115), Expect = 0.0e+00
Identity = 647/725 (89.24%), Postives = 674/725 (92.97%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGG G G DQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           DDLGF++EEE PK+EPPA + P+SGASIPG GGG T+V  LGDGGHSV ERVTEGYNQIP
Sbjct: 61  DDLGFKSEEE-PKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           DLRTNEMA+R GAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVA HQAP Q QPQP 
Sbjct: 121 DLRTNEMAIRVGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPPQQQPQPL 180

Query: 181 QQ-----QQQQQPQ---QHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYGNM 240
           QQ     Q Q QPQ   QHHHQ    GVLGNP SVEN+GLLRQ GGVNVNGVGGNG+GN+
Sbjct: 181 QQLQPPAQPQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGNV 240

Query: 241 GSA----GGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQV 300
           G+A    GGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQV
Sbjct: 241 GNAGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQV 300

Query: 301 EFYDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRG 360
           EFYDPSAATACKEGMNGH+FNGRPCVVA+ASPFSVK+MGEAQVNRNQQ+AQA NPQARRG
Sbjct: 301 EFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARRG 360

Query: 361 PIDAAGKIGGSSIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGR 420
           P D  GK+GGSSI TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGR
Sbjct: 361 PNDTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGR 420

Query: 421 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 480
           GIMGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL
Sbjct: 421 GIMGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 480

Query: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEE 540
           SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEE
Sbjct: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 540

Query: 541 HGGGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRER 600
           HGGGRAGESSYGEEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRDDRER
Sbjct: 541 HGGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRER 600

Query: 601 SKEKDPGPDHDWQDRRPRDDRDVGRERDKDRDRDR--ELSRDYERGH---DRDRDRDRDR 660
           SKEKDPGPDHDW DRRPRDDRD+GRERDKDRDRDR  E SRDYERGH   DRDRDRDRDR
Sbjct: 601 SKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRDRDRDRDRDR 660

Query: 661 DRHKEDRDRYSDHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRR 708
           DR+KEDRDRYSDHHRYRDREPEH+++WERGRSSRTHSKSRLPQEEE+RSR+RDADYGKRR
Sbjct: 661 DRYKEDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLPQEEENRSRTRDADYGKRR 720

[Close]

BLAST of Moc11g12260 vs. NCBI nr
Match: XP_038897335.1 (cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispida] >XP_038897338.1 cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispida])

HSP 1 Score: 1204.1 bits (3114), Expect = 0.0e+00
Identity = 643/719 (89.43%), Postives = 669/719 (93.05%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDE EGGFGEGVDQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDESEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           DDLGF+ EE  PK+EPPA   PSSGASIPGVGGGATEVA LGDGGHSV ERVTEGYNQIP
Sbjct: 61  DDLGFKTEE--PKMEPPAPAPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           D+R NEMA+RGGAG GPP+GGGGGIRVELGQGSKTNELEERS+NN+A HQAPQQ QPQ Q
Sbjct: 121 DIRANEMAIRGGAGPGPPVGGGGGIRVELGQGSKTNELEERSNNNIAAHQAPQQQQPQLQ 180

Query: 181 QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYGNMGSAGGGGG 240
            Q Q     QHHHQP  SGVLGNPGSVEN+GLLRQ GGVNVNGVGGNG+GNMGSAGGGGG
Sbjct: 181 AQPQ----PQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGGGG 240

Query: 241 GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACK 300
           GTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQVEFYDPSAATACK
Sbjct: 241 GTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACK 300

Query: 301 EGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPIDAAGKIGGSS 360
           EGMNGH+FNGRPCVVA+ASPFSVK+MGEAQVNRNQQ++QA NPQARRGP DA GKIGGS+
Sbjct: 301 EGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNDAVGKIGGSN 360

Query: 361 IQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQ 420
           I TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGGRGIMGNGGNGFGQ
Sbjct: 361 IATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQ 420

Query: 421 GIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP 480
           GIGA PPLLHPQSMM QGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP
Sbjct: 421 GIGAAPPLLHPQSMMAQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP 480

Query: 481 GVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYG 540
           GVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEEHGGGRA ESSYG
Sbjct: 481 GVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYG 540

Query: 541 EEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRD------DRERSKEKDP 600
           EEAGSDQQYGEGSHDRG WANS KEKDRGSERDWSQSSDRRYRD      DRERSKEKDP
Sbjct: 541 EEAGSDQQYGEGSHDRGAWANSTKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDP 600

Query: 601 GPDHDWQDRRPRDDRDVGRERDK--DRDRDRELSRDYERGH---DRDRDRDRDRDRHKED 660
           GPDHDW DRRPRDDRD+GRERDK  DRDRDRE SRDYERGH   DR+RDRDRDRDR+KED
Sbjct: 601 GPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKED 660

Query: 661 RDRYSDHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD 708
           RDRYSDHHRYRDREPEHE++WERGRSSRTHSKSRL QEEE+RSR+RDADYGKRRRLTS+
Sbjct: 661 RDRYSDHHRYRDREPEHEEDWERGRSSRTHSKSRLSQEEENRSRTRDADYGKRRRLTSE 713

[Close]

BLAST of Moc11g12260 vs. ExPASy Swiss-Prot
Match: Q2QZL4 (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF65B PE=3 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-05
Identity = 58/122 (47.54%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 584 DRERSKEKDPGPDHDWQDRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRD 643
           D++R +EKD       +DR    DRD  R RD+DRD+D+E  RD ER  DRDRDRD+DRD
Sbjct: 33  DKDREREKD-------KDRERHRDRDRDRGRDRDRDKDKEKDRDKER--DRDRDRDKDRD 92

Query: 644 RH-------KEDRDRYSDHHRYRDREPE----HEDEWERGRSSRTHSKSRLPQEEESRSR 695
           RH       +E RDR  DH R+R R+ E    HE +  R   SR+ S+SR  ++  SRSR
Sbjct: 93  RHHRHHRERREHRDRSDDHDRHRSRDSERRRDHERDGRRRHRSRSRSRSR-GRDRRSRSR 144

[Close]

BLAST of Moc11g12260 vs. ExPASy TrEMBL
Match: A0A6J1CCR1 (cleavage and polyadenylation specificity factor subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010455 PE=4 SV=1)

HSP 1 Score: 1346.6 bits (3484), Expect = 0.0e+00
Identity = 704/707 (99.58%), Postives = 705/707 (99.72%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP
Sbjct: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ
Sbjct: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180

Query: 181 QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGVGGNGYGNMGSAGGGGGG 240
           QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGVGGNGYGNMGSAGGGGGG
Sbjct: 181 QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGVGGNGYGNMGSAGGGGGG 240

Query: 241 TILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACKE 300
           TILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACKE
Sbjct: 241 TILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACKE 300

Query: 301 GMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPIDAAGKIGGSSI 360
           GMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGP DA GKIGGS+I
Sbjct: 301 GMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPNDAVGKIGGSNI 360

Query: 361 QTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQG 420
           QTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQG
Sbjct: 361 QTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQG 420

Query: 421 IGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPG 480
           IGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPG
Sbjct: 421 IGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPG 480

Query: 481 VAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYGE 540
           VAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYGE
Sbjct: 481 VAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYGE 540

Query: 541 EAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWQ 600
           EAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWQ
Sbjct: 541 EAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDWQ 600

Query: 601 DRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRD 660
           DRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRD
Sbjct: 601 DRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRD 660

Query: 661 REPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD 708
           REPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD
Sbjct: 661 REPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD 707

[Close]

BLAST of Moc11g12260 vs. ExPASy TrEMBL
Match: A0A6J1F726 (cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita moschata OX=3662 GN=LOC111442737 PE=4 SV=1)

HSP 1 Score: 1204.5 bits (3115), Expect = 0.0e+00
Identity = 647/725 (89.24%), Postives = 674/725 (92.97%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGG G G DQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           DDLGF++EEE PK+EPPA + P+SGASIPG GGG T+V  LGDGGHSV ERVTEGYNQIP
Sbjct: 61  DDLGFKSEEE-PKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           DLRTNEMA+R GAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVA HQAP Q QPQP 
Sbjct: 121 DLRTNEMAIRVGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPPQQQPQPL 180

Query: 181 QQ-----QQQQQPQ---QHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYGNM 240
           QQ     Q Q QPQ   QHHHQ    GVLGNP SVEN+GLLRQ GGVNVNGVGGNG+GN+
Sbjct: 181 QQLQPPAQPQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGNV 240

Query: 241 GSA----GGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQV 300
           G+A    GGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQV
Sbjct: 241 GNAGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQV 300

Query: 301 EFYDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRG 360
           EFYDPSAATACKEGMNGH+FNGRPCVVA+ASPFSVK+MGEAQVNRNQQ+AQA NPQARRG
Sbjct: 301 EFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARRG 360

Query: 361 PIDAAGKIGGSSIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGR 420
           P D  GK+GGSSI TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGR
Sbjct: 361 PNDTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGR 420

Query: 421 GIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 480
           GIMGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL
Sbjct: 421 GIMGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGIL 480

Query: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEE 540
           SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEE
Sbjct: 481 SSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE 540

Query: 541 HGGGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRER 600
           HGGGRAGESSYGEEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRDDRER
Sbjct: 541 HGGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRER 600

Query: 601 SKEKDPGPDHDWQDRRPRDDRDVGRERDKDRDRDR--ELSRDYERGH---DRDRDRDRDR 660
           SKEKDPGPDHDW DRRPRDDRD+GRERDKDRDRDR  E SRDYERGH   DRDRDRDRDR
Sbjct: 601 SKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRDRDRDRDRDR 660

Query: 661 DRHKEDRDRYSDHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRR 708
           DR+KEDRDRYSDHHRYRDREPEH+++WERGRSSRTHSKSRLPQEEE+RSR+RDADYGKRR
Sbjct: 661 DRYKEDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLPQEEENRSRTRDADYGKRR 720

[Close]

BLAST of Moc11g12260 vs. ExPASy TrEMBL
Match: A0A6J1ILS2 (cleavage and polyadenylation specificity factor subunit 6-like OS=Cucurbita maxima OX=3661 GN=LOC111476425 PE=4 SV=1)

HSP 1 Score: 1203.7 bits (3113), Expect = 0.0e+00
Identity = 647/723 (89.49%), Postives = 674/723 (93.22%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGG G G DQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           DDLGF++EEE PK+EPPA + P+SGASIPG GGG T+V  LGDGGHSV ERVTEGYNQIP
Sbjct: 61  DDLGFKSEEE-PKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           DLR NEMA+R GAGSGPP+GGGGGIRVELGQGSKTNELEERSSNNVA HQAPQQ QPQPQ
Sbjct: 121 DLRANEMAIRVGAGSGPPIGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPQQQQPQPQ 180

Query: 181 QQQQ---QQQPQ---QHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYGNMGS 240
           QQ Q   Q QPQ   QHHHQ    GVLGNP SVEN+GLLRQ GGVNVNGVGGNG+GN+GS
Sbjct: 181 QQLQPPAQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGNVGS 240

Query: 241 A----GGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEF 300
           A    GGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEF
Sbjct: 241 AGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEF 300

Query: 301 YDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPI 360
           YDPSAATACKEGMNGH+FNGRPCVVA+ASPFSVK+MGEAQVNRNQQ+AQA NPQARRGP 
Sbjct: 301 YDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARRGPN 360

Query: 361 DAAGKIGGSSIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGI 420
           D  GK+GGSSI TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGI
Sbjct: 361 DTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGI 420

Query: 421 MGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 480
           MGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS
Sbjct: 421 MGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 480

Query: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHG 540
           FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEEHG
Sbjct: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHG 540

Query: 541 GGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSK 600
           GGRAGESSYGEEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRDDRERSK
Sbjct: 541 GGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRERSK 600

Query: 601 EKDPGPDHDWQDRRPRDDRDVGRERDKDRDRDR--ELSRDYERGH---DRDRDRDRDRDR 660
           EKD GPDHDW DRRPRDDRD+GRERDKDRDRDR  E SRDYERGH   DRDRDRDRDRDR
Sbjct: 601 EKDLGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRDRDRDRDRDRDR 660

Query: 661 HKEDRDRYSDHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRL 708
           +KEDRDRYSDHHRYRDREPEH+++WERGRSSRTHSKSRLPQEEE+RSR+RDADYGKRRRL
Sbjct: 661 YKEDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLPQEEENRSRTRDADYGKRRRL 720

[Close]

BLAST of Moc11g12260 vs. ExPASy TrEMBL
Match: A0A5D3CC60 (Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00770 PE=4 SV=1)

HSP 1 Score: 1185.2 bits (3065), Expect = 0.0e+00
Identity = 640/722 (88.64%), Postives = 669/722 (92.66%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGD-GGHSVPERVTEGYNQI 120
           D LGF+ EEE PK+EPPA + P+SGASIPG+GGGATEV  LGD GGH+V ERVTEGYNQI
Sbjct: 61  DGLGFKREEE-PKMEPPAPVPPTSGASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQI 120

Query: 121 PDLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQP 180
           PDLRTNEMA+RGGAGSGPP+GGG GIRVELGQGSK  ELEERSSNNVA HQAPQQPQ QP
Sbjct: 121 PDLRTNEMAIRGGAGSGPPVGGGVGIRVELGQGSKPIELEERSSNNVAGHQAPQQPQLQP 180

Query: 181 QQQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYGNMGSAGGGG 240
           Q Q       QHHHQP  SGVLGNPGSVEN+GLLRQ GGVNVNGVGGNG+GN+GSAGGG 
Sbjct: 181 QPQ------PQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAGGGS 240

Query: 241 GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATAC 300
           GGT+LFVGDLHWWTTDAELEVELCKYGPLKEVKF+DEKASGKSKGYCQVEFYDPSAATAC
Sbjct: 241 GGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATAC 300

Query: 301 KEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPIDAAGKIGGS 360
           KEGMNGH+FNGRPCVVA+ASPFSVKKMGEAQVNRNQQIAQA NPQARR P DA GKIGGS
Sbjct: 301 KEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGS 360

Query: 361 SIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFG 420
           SI TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR RGGG+GGRGIMGNGGNGFG
Sbjct: 361 SIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGRGIMGNGGNGFG 420

Query: 421 QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL 480
           QGIGATPPLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL
Sbjct: 421 QGIGATPPLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL 480

Query: 481 PGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSY 540
           PGVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEE GGGRAGESSY
Sbjct: 481 PGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSY 540

Query: 541 GEEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRD------DRERSKEKD 600
           GEEAGSDQ YGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRD      DRERSKEKD
Sbjct: 541 GEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKD 600

Query: 601 PGPDHDWQDRRPRDDRDVGRERDK--DRDRDRELSRDYERGH---DRDRDRDRDRDRHKE 660
           PGPDHDW DRRPRDDRD+GRERDK  DRDRDRE SRDYERGH   DR+R+RDRDRDR+K+
Sbjct: 601 PGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHERDRERERDRDRDRYKD 660

Query: 661 DRDRYSDHHRYRDREPEHEDEWERGRSSRT--HSKSRLPQEEESRSRSRDADYGKRRRLT 708
           DR+RYSDHHRYRDREPEH+++WERGRSSRT  HSKSRL QEEESRSRSRDADYGKRRRLT
Sbjct: 661 DRERYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEESRSRSRDADYGKRRRLT 715

[Close]

BLAST of Moc11g12260 vs. ExPASy TrEMBL
Match: A0A6J1ITV5 (cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita maxima OX=3661 GN=LOC111480534 PE=4 SV=1)

HSP 1 Score: 1174.5 bits (3037), Expect = 0.0e+00
Identity = 631/714 (88.38%), Postives = 659/714 (92.30%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60
           MDEGEGGFGEGVDQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120
           +DLGF+N EE PK EPPA +APSSGASIPGVGGGATEV+ LGDGG SV  R TEGYNQIP
Sbjct: 61  EDLGFKNVEE-PKREPPAAVAPSSGASIPGVGGGATEVSGLGDGGPSVSVRPTEGYNQIP 120

Query: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180
           DLRTNEMA+RGGAGSGPP+GGGGGIRVELGQGSKTNEL+ERSSNN A HQAPQ      Q
Sbjct: 121 DLRTNEMAIRGGAGSGPPIGGGGGIRVELGQGSKTNELDERSSNNAAAHQAPQ------Q 180

Query: 181 QQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYGNMGSAGGGGG 240
           QQQQQQQ QQHH QP   G+LGNPG+VEN+GLLRQ GGVNVNG GGNG GNMG+AGGGGG
Sbjct: 181 QQQQQQQQQQHHPQPPQGGLLGNPGNVENEGLLRQGGGVNVNGAGGNGLGNMGNAGGGGG 240

Query: 241 GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACK 300
           GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYD SAATACK
Sbjct: 241 GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDSSAATACK 300

Query: 301 EGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPIDAAGKIGGSS 360
           EGMNGH+FNGRPCVVAFASPFSVK+MGEAQVNRNQQIAQA NPQARRGP +AAGKIGGS+
Sbjct: 301 EGMNGHIFNGRPCVVAFASPFSVKRMGEAQVNRNQQIAQATNPQARRGPNEAAGKIGGSN 360

Query: 361 IQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGNGGNGFGQ 420
           I TGGNYQG DNNRGSGRGNWGRGNAHGMGGRGPAG MR RGGGMGGRGIMGNGG GFGQ
Sbjct: 361 IATGGNYQGVDNNRGSGRGNWGRGNAHGMGGRGPAGLMRGRGGGMGGRGIMGNGGTGFGQ 420

Query: 421 GIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLP 480
           GIG TPPLLHPQSMMGQGFDP+FGAPMGRMG YGGFPGAPAPPFSGILSSFPPVGGVGLP
Sbjct: 421 GIGGTPPLLHPQSMMGQGFDPTFGAPMGRMGAYGGFPGAPAPPFSGILSSFPPVGGVGLP 480

Query: 481 GVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHGGGRAGESSYG 540
           GVAPHVNPAFFGRGMPMNGMGMM  SGVDG NMGMW+DPSMGGWGSEEHGGGRAGESSYG
Sbjct: 481 GVAPHVNPAFFGRGMPMNGMGMMPSSGVDGHNMGMWTDPSMGGWGSEEHGGGRAGESSYG 540

Query: 541 EEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRD------DRERSKEKDP 600
           EEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRD      DRE SKEKDP
Sbjct: 541 EEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDGGYDRETSKEKDP 600

Query: 601 GPDHDWQDRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYS 660
           GP+HDW DRRPRDDRD+GRERDK RDRDRE SRD+ERGH    DRDRDRDR+KEDRDRYS
Sbjct: 601 GPEHDWPDRRPRDDRDIGRERDKVRDRDRERSRDHERGH---HDRDRDRDRYKEDRDRYS 660

Query: 661 DHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADYGKRRRLTSD 708
           DH RYRDREPEHE+EW+RGRSSRTHSKSRL QEEE+RSRS+DADYGKRRRLTS+
Sbjct: 661 DHQRYRDREPEHEEEWDRGRSSRTHSKSRLSQEEENRSRSKDADYGKRRRLTSE 704

[Close]

BLAST of Moc11g12260 vs. TAIR 10
Match: AT5G55670.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 649.8 bits (1675), Expect = 2.5e-186
Identity = 432/747 (57.83%), Postives = 520/747 (69.61%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 60
           MDEG+G      DQ+DQFH+NEAISAVAD+GF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 61  NDDLGFRNE-------EEPPKIEPPATLAPSSGASIPGVGGGATE---VASLGDGGHSVP 120
           ND+ G RNE       EE  ++EP    A  S  SIPG+ G + E    A  G GG    
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVS-ISIPGLVGESVEKEAEAESGGGGSGSG 120

Query: 121 ERV---TEGYNQIPDLRTNEMAMR--GGAGSGPPMGGGGGIRVELGQGS-KTNELEERSS 180
             V   + GY    +++ ++++    GG G+G     GGG+RVELGQ S + N+LE    
Sbjct: 121 TDVVVASSGYG-AQEVKVSDVSQEIPGGIGTGT----GGGLRVELGQASNRANDLEAPRG 180

Query: 181 NNVAVHQAPQQPQPQPQQQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGV 240
           NN++    P  P P     +   +P           V+GN     N G+    G N+ G 
Sbjct: 181 NNISQGLLP--PPPVLGNNENLMRP-----------VMGN----VNGGIPPGPGSNMVGN 240

Query: 241 GGN----GYGNMGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASG 300
           G N    G    G+ GGGGGG  LFVGDLHWWTTDAELE ELCKYG +KEVKFFDEKASG
Sbjct: 241 GANIAMPGVVGGGTGGGGGGGAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASG 300

Query: 301 KSKGYCQVEFYDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQA 360
           KSKGYCQVEFYDP AA+ACK+ +NG+ FNGRPCVV +ASP+SVK+MGEAQVNR QQ AQ+
Sbjct: 301 KSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQ-AQS 360

Query: 361 ANPQARRG--------PIDAAGKIGGSSIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGR 420
              QA+RG        P+ A      ++   GGN+QGG+ NRG GRGNWGRGNA GMGGR
Sbjct: 361 VIAQAKRGGPADPPSKPLVANNNNNNNNNAIGGNFQGGE-NRGFGRGNWGRGNAQGMGGR 420

Query: 421 GPAGPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPL-LHPQSMMGQGFDPSFGAPMGRMG 480
           GP GPMRNR  GMGGRG+MGNG  GFGQG+G  PP+ +  Q MMGQGF+ +FG PM RMG
Sbjct: 421 GPGGPMRNRPNGMGGRGLMGNG--GFGQGMGTGPPMNMMHQPMMGQGFEQAFGGPMARMG 480

Query: 481 TYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVD-G 540
            YGGFPGAP P F G+LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMM  +GVD G
Sbjct: 481 GYGGFPGAPGPQFPGLLSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPNAGVDGG 540

Query: 541 PNMGMWSDPSMGGWGS-EEHGGGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRG 600
            NMGMW DP+ GGWG+ E+ G GRA ESSYGEEA SD QYGE +H+RG   N  KEK+R 
Sbjct: 541 HNMGMW-DPNSGGWGAGEDLGSGRAAESSYGEEAASDHQYGEVNHERGARPNPVKEKERA 600

Query: 601 SERDWSQSSDRRYRDD------RERSKEKDPGPDHDWQDRRPRDDRDVGRERDKD-RDRD 660
           SER+WS SSDRR R+D      R+  +EKD G  +D  +RR RDDRD GRER+++   +D
Sbjct: 601 SEREWSGSSDRRNREDKDAGYERDIPREKDVGHGYDMPERRHRDDRDTGREREREHHHKD 660

Query: 661 RELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRDR-EPEHEDEWERGRSSRTHSK 708
           RE SR+    H RDR+R+R+RDRH+E+R+RY   HR R R EPEH++EW RGRSSR H+K
Sbjct: 661 RERSRE----HVRDRERERERDRHREERERYGGDHRTRHRDEPEHDEEWNRGRSSRGHNK 710

[Close]

BLAST of Moc11g12260 vs. TAIR 10
Match: AT5G55670.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 432.2 bits (1110), Expect = 8.2e-121
Identity = 339/744 (45.56%), Postives = 416/744 (55.91%), Query Frame = 0


Query: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 60
           MDEG+G      DQ+DQFH+NEAISAVAD+GF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 61  NDDLGFRNE-------EEPPKIEPPATLAPSSGASIPGVGGGATE---VASLGDGGHSVP 120
           ND+ G RNE       EE  ++EP    A  S  SIPG+ G + E    A  G GG    
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVS-ISIPGLVGESVEKEAEAESGGGGSGSG 120

Query: 121 ERV---TEGYNQIPDLRTNEMAMR--GGAGSGPPMGGGGGIRVELGQGS-KTNELEERSS 180
             V   + GY    +++ ++++    GG G+G     GGG+RVELGQ S + N+LE    
Sbjct: 121 TDVVVASSGYG-AQEVKVSDVSQEIPGGIGTGT----GGGLRVELGQASNRANDLEAPRG 180

Query: 181 NNVAVHQAPQQPQPQPQQQQQQQQPQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGV 240
           NN++    P  P P     +   +P           V+GN     N G+    G N+ G 
Sbjct: 181 NNISQGLLP--PPPVLGNNENLMRP-----------VMGN----VNGGIPPGPGSNMVGN 240

Query: 241 GGN----GYGNMGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASG 300
           G N    G    G+ GGGGGG  LFVGDLHWWTTDAELE ELCKYG +KEVKFFDEKASG
Sbjct: 241 GANIAMPGVVGGGTGGGGGGGAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASG 300

Query: 301 KSKGYCQVEFYDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQA 360
           KSKGYCQVEFYDP AA+ACK+ +NG+ FNGRPCVV +ASP+SVK+MGEAQVNR QQ AQ+
Sbjct: 301 KSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQ-AQS 360

Query: 361 ANPQARRG--------PIDAAGKIGGSSIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGR 420
              QA+RG        P+ A      ++   GGN+QGG+ NRG GRGNWGRGNA GMGGR
Sbjct: 361 VIAQAKRGGPADPPSKPLVANNNNNNNNNAIGGNFQGGE-NRGFGRGNWGRGNAQGMGGR 420

Query: 421 GPAGPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGT 480
           GP GPMRNR  GM                                               
Sbjct: 421 GPGGPMRNRPNGM----------------------------------------------- 480

Query: 481 YGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPN 540
                                                                       
Sbjct: 481 ------------------------------------------------------------ 540

Query: 541 MGMWSDPSMGGWGSEEHGGGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRGSER 600
                             GGRA ESSYGEEA SD QYGE +H+RG   N  KEK+R SER
Sbjct: 541 ------------------GGRAAESSYGEEAASDHQYGEVNHERGARPNPVKEKERASER 585

Query: 601 DWSQSSDRRYRDD------RERSKEKDPGPDHDWQDRRPRDDRDVGRERDKD-RDRDREL 660
           +WS SSDRR R+D      R+  +EKD G  +D  +RR RDDRD GRER+++   +DRE 
Sbjct: 601 EWSGSSDRRNREDKDAGYERDIPREKDVGHGYDMPERRHRDDRDTGREREREHHHKDRER 585

Query: 661 SRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYRDR-EPEHEDEWERGRSSRTHSKSRL 708
           SR+    H RDR+R+R+RDRH+E+R+RY   HR R R EPEH++EW RGRSSR H+KSRL
Sbjct: 661 SRE----HVRDRERERERDRHREERERYGGDHRTRHRDEPEHDEEWNRGRSSRGHNKSRL 585

[Close]

BLAST of Moc11g12260 vs. TAIR 10
Match: AT1G13190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 234.2 bits (596), Expect = 3.3e-61
Identity = 253/705 (35.89%), Postives = 340/705 (48.23%), Query Frame = 0


Query: 24  ISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFRNEEEPPKIEPPATLA-- 83
           I A+ADE  +G D+DEY+DLY+DVNVGE F Q+          N+ +PP     +  +  
Sbjct: 21  IPALADEELMG-DDDEYDDLYSDVNVGESFFQA---------HNQPQPPAQVNTSNASLQ 80

Query: 84  --PSSGASIPGVG---GGATEVASLGDGGH---SVPERVTEGYNQIPDLRTNEMAMRGGA 143
              S  A+ P +G   GG  E     DGGH   S P+  ++ Y Q               
Sbjct: 81  AQNSHVAAEPRMGIVSGGTVEGKYRNDGGHNGISGPDTRSDVYPQASSF----------- 140

Query: 144 GSGPPMGGGGGIRVEL------GQGSKTNELEERSSNNVAVHQAPQQPQPQPQQQQQQQQ 203
                  G  G+ +++       QGS T  L     +  AV+  P+ P            
Sbjct: 141 -------GAKGLNIDIQSNKIAQQGSTTVVLNNHGFSGNAVN-VPEMP-----VHNSYGA 200

Query: 204 PQQHHHQPLHSGVLGNPGSVENDGLLRQGGVNVNGVGGNGYGNMGSAGGGGGGTILFVGD 263
           P Q   Q   S +  NP  + N    +   V+                   G T+LFVG+
Sbjct: 201 PPQGAQQIPVSQMSVNPNVMMNKSPTQSFVVD------------------NGNTMLFVGE 260

Query: 264 LHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDPSAATACKEGMNGHVF 323
           LHWWTTDAE+E  L +YG +KE+KFFDE+ SGKSKGYCQVEFYD +AA ACKEGMNG +F
Sbjct: 261 LHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIF 320

Query: 324 NGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPIDAAGKIGGSSIQTGGNYQ 383
           NG+ CVVAFASP ++K+MG     RNQ   Q  N    R P++  G   G++     N Q
Sbjct: 321 NGKACVVAFASPETLKQMGANFTGRNQGQNQIQN----RRPLN-EGMGRGNNNNNNMNTQ 380

Query: 384 GGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGI----MGNGGNGFGQGIG- 443
            GD  R  GRG + RG   GMG RG A      GG M GRG+     G+G   +G G+  
Sbjct: 381 NGDGGRNYGRGGFARG-GQGMGNRGGAW-----GGAMRGRGVNNMASGSGAGPYGPGLAG 440

Query: 444 -ATPPLLHPQSMMGQ-GFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPG 503
            A   ++HPQ MMG  GFDP+F   MGR   YGG+ G   P   G+  S+P V  +G+ G
Sbjct: 441 PAFGGMMHPQGMMGAGGFDPTF---MGRGAGYGGYSGIAYP---GMPHSYPGVNAMGMVG 500

Query: 504 VAPHVNPAFFGRGMPMNGMGMMAPSGVDGPN-MGMWSDPSMGGWGSEEHGGGRAGESSYG 563
           +APHVNPAFFG      GMG M  SG++G +   MW         SE +GGG       G
Sbjct: 501 IAPHVNPAFFG-----TGMGTMGSSGMNGVHAAAMW---------SEANGGG-------G 560

Query: 564 EEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRDDRERSKEKDPGPDHDW 623
           EE GS+          GG+ +  +EK+    RD  +++  R                 DW
Sbjct: 561 EEGGSEY---------GGYEDETQEKEEKPSRDKERATTER-----------------DW 571

Query: 624 QDRRPRDDRDVGRERDKDRDRDRELSRDYERGHDRDRDRDRDRDRHKEDRDRYSDHHRYR 683
                                              +   DR    H+E++D + ++ + R
Sbjct: 621 S----------------------------------ENSGDRRHKSHREEKDSHREYKQQR 571

Query: 684 DREPEHEDEWERGRSS-RTHSKSRLPQEEESRSRSRDADYGKRRR 704
           DR+    DE++RG+SS ++ S+SR+  E++ RSRSRDADYGKRRR
Sbjct: 681 DRD---SDEFDRGQSSLKSRSRSRM-SEDDHRSRSRDADYGKRRR 571

The following BLAST results are available for this feature:

BLAST of Moc11g12260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139595.1	0.0e+00	99.58	cleavage and polyadenylation specificity factor subunit 6 [Momordica charantia]	[more]
XP_038897113.1	0.0e+00	90.88	uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida]	[more]
XP_023535463.1	0.0e+00	89.76	cleavage and polyadenylation specificity factor subunit 6-like [Cucurbita pepo s...	[more]
XP_022936014.1	0.0e+00	89.24	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucurbita m...	[more]
XP_038897335.1	0.0e+00	89.43	cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispid...	[more]

BLAST of Moc11g12260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QZL4	4.2e-05	47.54	Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Moc11g12260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCR1	0.0e+00	99.58	cleavage and polyadenylation specificity factor subunit 6 OS=Momordica charantia...	[more]
A0A6J1F726	0.0e+00	89.24	cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita...	[more]
A0A6J1ILS2	0.0e+00	89.49	cleavage and polyadenylation specificity factor subunit 6-like OS=Cucurbita maxi...	[more]
A0A5D3CC60	0.0e+00	88.64	Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. m...	[more]
A0A6J1ITV5	0.0e+00	88.38	cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita...	[more]

BLAST of Moc11g12260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55670.1	2.5e-186	57.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55670.2	8.2e-121	45.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G13190.1	3.3e-61	35.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 242..315 e-value: 1.2E-19 score: 81.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 243..312 e-value: 3.8E-13 score: 49.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 241..319 score: 13.344883
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 163..340 e-value: 3.0E-26 score: 94.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 358..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 339..396
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 510..707
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 557..707
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..196
None	No IPR available	PANTHER	PTHR23204:SF9	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE	coord: 1..707
None	No IPR available	CDD	cd12372	RRM_CFIm68_CFIm59	coord: 243..316 e-value: 2.14891E-33 score: 120.863
IPR034772	CPSF6/7 family	PANTHER	PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	coord: 1..707
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 240..323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g12260.1	Moc11g12260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding