Moc11g10460 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g10460
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	50S ribosomal protein L13
Location	chr11: 7571033 .. 7573015 (+)
RNA-Seq Expression	Moc11g10460
Synteny	Moc11g10460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCCAAGCAGCTACTTCTTTCAATGGCAACATGAAGGCAATGTTTCTTTACTTGAACACTTATGCATATTACTTATAGGAAATGGTTTTGTGATGCGTACTTGTGTTCATTATAGGTTAGAAATTGGCTTCCTGTTTACTGCACGCCAAGTGTATGTACAAGTAGAATTTACTTGTGGATTTTATTTTCGTTTTTGTGCAATCAATTGATGAGATTGTGAAGTTTGACAATTTATTTTGCTGTTGGATGTGCCATTAAGTTGTGCTTGAGATTATGTTTTTTAATTGTCTATCTGGTTTTGAAGAAGAGGCTTTAGTTTGAGTTGCATTCATGATGGTTGCTGGATTTGGATGATTCCAAGGGATTCCTCCTGTTAGTTTGAGTTGTTTCTATATGCATACTTTGTTAGAAGGAGAAGTGAAGACTTAAAAATTGCATTTTGTGACGATGTACATCCAAGGGTTTTCCTACGATATGGAGTGTTTGAATGGATAATTGAGGAAGTTGTTTTACATTGCCATGTTGGTTTCTTGTTACGTGGAATAGTTGGTTGGAAAGAAACCGGAGAATTATTGGGTACTGATAGATTGTTGGTGGAGCTCTGGGGTAAAAAAAAAAGCATTTTTGTTCATTGCTTCTATACTTGGAAGTGTGGTCTTTTTGATAGATAGCTTTGTTATCATTTTTATTCGTCCAGATTTCTTTTTGGACCTTCTTTTTCAGATCTTTGGGAGAACTTGGTTGAAAGTTATCACCTAGGAATACCTTTCTCTGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTTTTTAGTTATCACCTAGGAAGTATAAATTATAGTAGGAAGAAATAGGAAGACTTTTGTAGCAGAGGATAGAGGGTTCTCGTATTTTTGGTTTTCTATTTAATTTATAAAAAGAAAATTATAATAGCCTCCCCTTGGCGTTCTTGGGATACATACTTTTGTCATACATATTCAGAGATTAATATTGTTATGTATTAACAATGTTCCAGAAAGCACTTGCTGGCTTGAGACGCATCAATTTGGAAGGTCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTAGAATGTAGTATTCTATTAACTCTTCACTTGGCGTTGATTGGTTATGCAAGATTTTAGAGATAATATGGCTAGAAACAAATAGAACTCTTGTAATTTTTTCTACTAGGTTCTTGGGAGATTGGCATCTCAAATATCTACCGTAGTTCAAGGCAAGGACAAGCCAACATATGCACCAAATCGAGATGATGGGGATATGTGTATTGTGCTTAATGCTAAGGATATCTGTGTCACTGGAAGAAAACTCACTGATAAATTTTATCACTGGCATACTGGGTAAGTAGTAAGTCTTTTTAAAGTTGGTCATTGGGATGGATTCTCAAGTTTGTTAAAAAAATTCTTAAATTAAATGGCTTGGTTTCAGGAAATCAATTTTGTGTTGCTTTCATAATAATATGTTGTCCACAGAATTTCATATTTTGTTTTCAACTGTGGTGGCTTGTAGGTATGTTGGAAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAAGACCCTACAGAAGTCATTCGGAAAGCTGTATTGCGCATGCTTCCAAGAAACGAACTGCGTGATGTTAGTTTTTAACTTTATTTGGTGTTTGAATTAGCTTCGGAATCTCTACAGGCATTTCATATTTTACCAGTAGCTTTATTTGATCTATTACATGGATGCAGGATAGAGATAGGAAACTGAGAATTTTTGCTGGAGATGAACACCCTTTTGGCGACCGCCCACTTGAGCCCTATATCATGCCACCTCGAAATGTAAGAGAGCTGCGTCCTCGTGTAAGACGAGCCATGATTCGAGCACAGAAAAAGGCTGAACAACAAACAAACGGCAACAATGAGTCAAGGAAAAGTAGAAAGAAAGAAGAGAAGGTAGAAGTAATTGCGTAA

mRNA sequence

ATGGCAAGCCAAGCAGCTACTTCTTTCAATGGCAACATGAAGAAAGCACTTGCTGGCTTGAGACGCATCAATTTGGAAGGTCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTCTTGGGAGATTGGCATCTCAAATATCTACCGTAGTTCAAGGCAAGGACAAGCCAACATATGCACCAAATCGAGATGATGGGGATATGTGTATTGTGCTTAATGCTAAGGATATCTGTGTCACTGGAAGAAAACTCACTGATAAATTTTATCACTGGCATACTGGGTATGTTGGAAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAAGACCCTACAGAAGTCATTCGGAAAGCTGTATTGCGCATGCTTCCAAGAAACGAACTGCGTGATGATAGAGATAGGAAACTGAGAATTTTTGCTGGAGATGAACACCCTTTTGGCGACCGCCCACTTGAGCCCTATATCATGCCACCTCGAAATGTAAGAGAGCTGCGTCCTCGTGTAAGACGAGCCATGATTCGAGCACAGAAAAAGGCTGAACAACAAACAAACGGCAACAATGAGTCAAGGAAAAGTAGAAAGAAAGAAGAGAAGGTAGAAGTAATTGCGTAA

Coding sequence (CDS)

ATGGCAAGCCAAGCAGCTACTTCTTTCAATGGCAACATGAAGAAAGCACTTGCTGGCTTGAGACGCATCAATTTGGAAGGTCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTCTTGGGAGATTGGCATCTCAAATATCTACCGTAGTTCAAGGCAAGGACAAGCCAACATATGCACCAAATCGAGATGATGGGGATATGTGTATTGTGCTTAATGCTAAGGATATCTGTGTCACTGGAAGAAAACTCACTGATAAATTTTATCACTGGCATACTGGGTATGTTGGAAACCTCAAGGAAAGAAGTTTGAAGGATCAGTTGGCCAAAGACCCTACAGAAGTCATTCGGAAAGCTGTATTGCGCATGCTTCCAAGAAACGAACTGCGTGATGATAGAGATAGGAAACTGAGAATTTTTGCTGGAGATGAACACCCTTTTGGCGACCGCCCACTTGAGCCCTATATCATGCCACCTCGAAATGTAAGAGAGCTGCGTCCTCGTGTAAGACGAGCCATGATTCGAGCACAGAAAAAGGCTGAACAACAAACAAACGGCAACAATGAGTCAAGGAAAAGTAGAAAGAAAGAAGAGAAGGTAGAAGTAATTGCGTAA

Protein sequence

MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKAEQQTNGNNESRKSRKKEEKVEVIA

Homology

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BLAST of Moc11g10460 vs. NCBI nr
Match: XP_022139365.1 (uncharacterized protein LOC111010318 [Momordica charantia])

HSP 1 Score: 404.4 bits (1038), Expect = 5.6e-109
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA
Sbjct: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA
Sbjct: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVIA 205
           EQQTNGNNESRKSRKKEEKVEVIA
Sbjct: 181 EQQTNGNNESRKSRKKEEKVEVIA 204

[Close]

BLAST of Moc11g10460 vs. NCBI nr
Match: XP_022133371.1 (uncharacterized protein LOC111005959 [Momordica charantia])

HSP 1 Score: 397.9 bits (1021), Expect = 5.3e-107
Identity = 200/204 (98.04%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQAA+SFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTY 
Sbjct: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYT 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLPRN+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVIA 205
           EQQTNG+NESRKSRKKEEKVEVIA
Sbjct: 181 EQQTNGSNESRKSRKKEEKVEVIA 204

[Close]

BLAST of Moc11g10460 vs. NCBI nr
Match: XP_023003668.1 (uncharacterized protein LOC111497191 [Cucurbita maxima])

HSP 1 Score: 369.4 bits (947), Expect = 2.0e-98
Identity = 183/204 (89.71%), Postives = 196/204 (96.08%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQ AT+FNGNMK+ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYA
Sbjct: 1   MASQVATTFNGNMKRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI V+GRK TDK Y+WHTGYVGNLKERSLKDQ+AKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIYVSGRKPTDKIYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLPRN+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIRAQKKA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVIA 205
           EQQ N +N S+K+RKKEEKVEVIA
Sbjct: 181 EQQQNDDNHSKKNRKKEEKVEVIA 204

[Close]

BLAST of Moc11g10460 vs. NCBI nr
Match: XP_038883188.1 (50S ribosomal protein L13 isoform X3 [Benincasa hispida])

HSP 1 Score: 365.9 bits (938), Expect = 2.2e-97
Identity = 183/204 (89.71%), Postives = 194/204 (95.10%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQAA+S NGN+KKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY 
Sbjct: 1   MASQAASSLNGNLKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYT 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI VTGRKLTDK Y+WHTGYVGNLKER+LKDQ+AKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIAVTGRKLTDKVYYWHTGYVGNLKERNLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLP+N+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPR VRE+RP+VRRAMIRAQKKA
Sbjct: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRKVREMRPQVRRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVIA 205
           EQQ N  N  +KSRKKEEKVEVIA
Sbjct: 181 EQQQNSANVVKKSRKKEEKVEVIA 204

[Close]

BLAST of Moc11g10460 vs. NCBI nr
Match: XP_023518866.1 (uncharacterized protein LOC111782260 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 178/203 (87.68%), Postives = 195/203 (96.06%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQ A++FNGNMK+ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYA
Sbjct: 1   MASQVASTFNGNMKRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI V+GRK TDK Y+WHTGYVG++KERSLKDQ+AKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIYVSGRKPTDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLPRN+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIRAQKKA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVI 204
           EQQ NG+N S+K+RKKEEKVE +
Sbjct: 181 EQQQNGDNHSKKNRKKEEKVEEV 203

[Close]

BLAST of Moc11g10460 vs. ExPASy Swiss-Prot
Match: Q1AU63 (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117 GN=rplM PE=3 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-31
Identity = 63/127 (49.61%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 29  RWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLTDKF 88
           +W V DA+G+ LGRLA++IS +++GK+KP Y P+ D GD  +V+NA  + VTGRK   K 
Sbjct: 14  KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73

Query: 89  YHWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDRDRKLRIFAGDEHPFG 148
           Y WHTGY G L+ERS +  L K P E++R+AV  M+P+  L   + +KLRI+AG EHP  
Sbjct: 74  YRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHA 133

Query: 149 DRPLEPY 156
            +  EPY
Sbjct: 134 GQTPEPY 140

[Close]

BLAST of Moc11g10460 vs. ExPASy Swiss-Prot
Match: Q18CJ1 (50S ribosomal protein L13 OS=Clostridioides difficile (strain 630) OX=272563 GN=rplM PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-30
Identity = 61/117 (52.14%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 29  RWRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLTDKF 88
           +W + DA+G+ LGRLA++I+TV++GK KPT+ P+ D GD  +V+NA+ I ++G+KL  K+
Sbjct: 14  KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKY 73

Query: 89  YHWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDRDRKLRIFAGDEH 146
           Y +HTGYVG LKE S +D + K P EVI  AV  MLP+N+LR     +LR+FAG EH
Sbjct: 74  YRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130

[Close]

BLAST of Moc11g10460 vs. ExPASy Swiss-Prot
Match: B8G6P5 (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=rplM PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.4e-30
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 0


Query: 30  WRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLTDKFY 89
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  IV+NA+ I +TGRK   K Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIY 74

Query: 90  HWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDRDRKLRIFAGDEHPFGD 149
           + H+GY G LKE   K  LAK P  ++R AV RMLP+N +      KLRI+AG  HP   
Sbjct: 75  YRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 150 RPLEPYI 157
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of Moc11g10460 vs. ExPASy Swiss-Prot
Match: A1AXJ2 (50S ribosomal protein L13 OS=Ruthia magnifica subsp. Calyptogena magnifica OX=413404 GN=rplM PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.4e-30
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 0


Query: 30  WRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLTDKFY 89
           W + DA G++LGR A+QI++ ++GK KP Y P+ D GD  +++NA  I VTG K  DK Y
Sbjct: 15  WLLVDADGKILGRFATQIASRLRGKHKPEYTPHTDTGDYIVIINASKIKVTGNKFEDKMY 74

Query: 90  HWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDRDRKLRIFAGDEHPFG 149
           H HTGYVGNLK  + KD  AK P E+I K V  MLP+  L  D  RK+++FAG EH  G
Sbjct: 75  HHHTGYVGNLKSIAFKDLQAKKPEEIINKVVKGMLPKGPLGRDMFRKMKVFAGSEHTHG 133

[Close]

BLAST of Moc11g10460 vs. ExPASy Swiss-Prot
Match: A9WH96 (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) OX=324602 GN=rplM PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.2e-30
Identity = 65/127 (51.18%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 30  WRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLTDKFY 89
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  IV+NA+ I +TGRK   K Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 90  HWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDRDRKLRIFAGDEHPFGD 149
           + HTGY G +K    K  LAK P  ++R AV RMLP+N +      KLRI+AG  HP   
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 150 RPLEPYI 157
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]

BLAST of Moc11g10460 vs. ExPASy TrEMBL
Match: A0A6J1CC45 (uncharacterized protein LOC111010318 OS=Momordica charantia OX=3673 GN=LOC111010318 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.7e-109
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA
Sbjct: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA
Sbjct: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVIA 205
           EQQTNGNNESRKSRKKEEKVEVIA
Sbjct: 181 EQQTNGNNESRKSRKKEEKVEVIA 204

[Close]

BLAST of Moc11g10460 vs. ExPASy TrEMBL
Match: A0A6J1BUX0 (uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005959 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.6e-107
Identity = 200/204 (98.04%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQAA+SFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTY 
Sbjct: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYT 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLPRN+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVIA 205
           EQQTNG+NESRKSRKKEEKVEVIA
Sbjct: 181 EQQTNGSNESRKSRKKEEKVEVIA 204

[Close]

BLAST of Moc11g10460 vs. ExPASy TrEMBL
Match: A0A6J1KX97 (uncharacterized protein LOC111497191 OS=Cucurbita maxima OX=3661 GN=LOC111497191 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.7e-99
Identity = 183/204 (89.71%), Postives = 196/204 (96.08%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQ AT+FNGNMK+ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYA
Sbjct: 1   MASQVATTFNGNMKRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI V+GRK TDK Y+WHTGYVGNLKERSLKDQ+AKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIYVSGRKPTDKIYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLPRN+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIRAQKKA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVIA 205
           EQQ N +N S+K+RKKEEKVEVIA
Sbjct: 181 EQQQNDDNHSKKNRKKEEKVEVIA 204

[Close]

BLAST of Moc11g10460 vs. ExPASy TrEMBL
Match: A0A0A0KL19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487720 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.0e-95
Identity = 178/204 (87.25%), Postives = 192/204 (94.12%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQAATS  GNMKKALAGL+RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYA
Sbjct: 1   MASQAATSITGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI VTGRKLT K Y+WHTGYVGNLKER+L++Q+ +DPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLP+N+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RP+VRRAMIRAQK A
Sbjct: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVIA 205
           EQQ N  NE ++SRKKEEKVEV A
Sbjct: 181 EQQQNNKNEGKESRKKEEKVEVTA 204

[Close]

BLAST of Moc11g10460 vs. ExPASy TrEMBL
Match: A0A6J1HEZ9 (uncharacterized protein LOC111463568 OS=Cucurbita moschata OX=3662 GN=LOC111463568 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95
Identity = 176/203 (86.70%), Postives = 194/203 (95.57%), Query Frame = 0


Query: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60
           MASQ A++FNGNMK+ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYA
Sbjct: 1   MASQVASTFNGNMKRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI V+GRK +DK Y+WHTGYVG++KERSLKDQ+AKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIYVSGRKPSDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQKKA 180
           LRMLPRN+LRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRE+RPR RRAMIRAQKKA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRAQKKA 180

Query: 181 EQQTNGNNESRKSRKKEEKVEVI 204
           EQQ N +N S+K+RKKEEKVE +
Sbjct: 181 EQQQNNDNHSKKNRKKEEKVEEV 203

[Close]

BLAST of Moc11g10460 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 315.1 bits (806), Expect = 4.2e-86
Identity = 155/198 (78.28%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 1   MASQ--AATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPT 60
           MA+Q  AA SF GN+KKA+AG++RINL+GLRWRVFDA+GQVLGRLASQISTV+Q KDKPT
Sbjct: 1   MATQAAAAASFKGNLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPT 60

Query: 61  YAPNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRK 120
           Y PNRDDGD+CIVLNAK+I  TGRKLTDKFY WHTGY+G+LKERSLKDQ+AKDPTEVIRK
Sbjct: 61  YCPNRDDGDICIVLNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRK 120

Query: 121 AVLRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQK 180
           AV RMLP N LRDDRDRKLRIF G EHPFGD+PLEP++MPPR VRE+RPR RRAMIRAQK
Sbjct: 121 AVWRMLPSNNLRDDRDRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQK 180

Query: 181 KAEQQTNGNNESRKSRKK 197
           KAEQ  N   E +K +K+
Sbjct: 181 KAEQAENEGTEVKKGKKR 198

[Close]

BLAST of Moc11g10460 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 315.1 bits (806), Expect = 4.2e-86
Identity = 155/198 (78.28%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 1   MASQ--AATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPT 60
           MA+Q  AA SF GN+KKA+AG++RINL+GLRWRVFDA+GQVLGRLASQISTV+Q KDKPT
Sbjct: 1   MATQAAAAASFKGNLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPT 60

Query: 61  YAPNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRK 120
           Y PNRDDGD+CIVLNAK+I  TGRKLTDKFY WHTGY+G+LKERSLKDQ+AKDPTEVIRK
Sbjct: 61  YCPNRDDGDICIVLNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRK 120

Query: 121 AVLRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRAQK 180
           AV RMLP N LRDDRDRKLRIF G EHPFGD+PLEP++MPPR VRE+RPR RRAMIRAQK
Sbjct: 121 AVWRMLPSNNLRDDRDRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQK 180

Query: 181 KAEQQTNGNNESRKSRKK 197
           KAEQ  N   E +K +K+
Sbjct: 181 KAEQAENEGTEVKKGKKR 198

[Close]

BLAST of Moc11g10460 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-16
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 30  WRVFDAKGQVLGRLASQISTVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLTDKFY 89
           W V DA  ++LGRLAS I+  ++GK+  +Y P+ D G   IV+NA+ + V+G+K   K Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164

Query: 90  HWHTGYVGNLKERSLKDQLAKDPTEVIRKAVLRMLPRNELRDDRDRKLRIFAGDEHPF-G 149
             H+G  G +   +      + P  ++  AV  MLP+  L       L+++ G +HP   
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224

Query: 150 DRPLEPYIMPPRNVR 164
            +PL+   +P R+ R
Sbjct: 225 QKPLD---LPIRDKR 236

The following BLAST results are available for this feature:

BLAST of Moc11g10460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139365.1	5.6e-109	100.00	uncharacterized protein LOC111010318 [Momordica charantia]	[more]
XP_022133371.1	5.3e-107	98.04	uncharacterized protein LOC111005959 [Momordica charantia]	[more]
XP_023003668.1	2.0e-98	89.71	uncharacterized protein LOC111497191 [Cucurbita maxima]	[more]
XP_038883188.1	2.2e-97	89.71	50S ribosomal protein L13 isoform X3 [Benincasa hispida]	[more]
XP_023518866.1	1.9e-96	87.68	uncharacterized protein LOC111782260 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc11g10460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1AU63	2.2e-31	49.61	50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16...	[more]
Q18CJ1	3.2e-30	52.14	50S ribosomal protein L13 OS=Clostridioides difficile (strain 630) OX=272563 GN=...	[more]
B8G6P5	5.4e-30	51.97	50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX...	[more]
A1AXJ2	5.4e-30	51.26	50S ribosomal protein L13 OS=Ruthia magnifica subsp. Calyptogena magnifica OX=41...	[more]
A9WH96	9.2e-30	51.18	50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 6...	[more]

BLAST of Moc11g10460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CC45	2.7e-109	100.00	uncharacterized protein LOC111010318 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1BUX0	2.6e-107	98.04	uncharacterized protein LOC111005959 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1KX97	9.7e-99	89.71	uncharacterized protein LOC111497191 OS=Cucurbita maxima OX=3661 GN=LOC111497191...	[more]
A0A0A0KL19	1.0e-95	87.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487720 PE=3 SV=1	[more]
A0A6J1HEZ9	1.3e-95	86.70	uncharacterized protein LOC111463568 OS=Cucurbita moschata OX=3662 GN=LOC1114635...	[more]

BLAST of Moc11g10460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01790.1	4.2e-86	78.28	Ribosomal protein L13 family protein	[more]
AT3G01790.2	4.2e-86	78.28	Ribosomal protein L13 family protein	[more]
AT1G78630.1	2.1e-16	33.33	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 29..147 e-value: 5.6E-43 score: 144.1
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 29..146 e-value: 1.3E-42 score: 144.7
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 11..183
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 30..153 score: 25.333271
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 30..143 e-value: 1.0788E-50 score: 158.052
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 27..167 e-value: 1.6E-57 score: 195.5
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 29..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..204
None	No IPR available	PANTHER	PTHR11545:SF2	39S RIBOSOMAL PROTEIN L13, MITOCHONDRIAL	coord: 11..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g10460.1	Moc11g10460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome