Moc11g06660 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g06660
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	circumsporozoite protein-like
Location	chr11: 4551379 .. 4551852 (-)
RNA-Seq Expression	Moc11g06660
Synteny	Moc11g06660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGATCCGGTGCCGGCGACTCTGTTCAAGGCAGCGCCATTGCCGGGAGTAGAGGCTGGCGACGGAGCCTGTGACGGAGGGTTTGCGATCGAAGTTTCAGGAGTCGGAGTGGACGCTGGTGAATCTGAAGGAGCTGTAGGAGGAGCAGGTGGAGAAGAAGCCGGCGCCGAAGCTGGTGGTGAAGTTCCAGTGGAAGGAGCGGGAGAGACGCCCGCCGGAGCAGGAGATGAAGACGGTGTCGACGCTGGAGGAGTCGCTACTGCAGTCGGAGGAGCCGCTTTCGGCGACGACGCCGGAGGCGGTTTGGTTGGAGAGGAAGCCGGAGCGGCGCCCGGAGCCTGGCCCAAGGAGCCGGCGACCAAGGCGAATAGCACGAAGAACACGAAAGCGGAGGAAGCCATGGCGGTGAAAAATGCGCAGCGAAGAGAGGAGAATGGAAGAAGAAGATCGGAAGGAAGTTGCAGAGCTTGA

mRNA sequence

ATGATAGATCCGGTGCCGGCGACTCTGTTCAAGGCAGCGCCATTGCCGGGAGTAGAGGCTGGCGACGGAGCCTGTGACGGAGGGTTTGCGATCGAAGTTTCAGGAGTCGGAGTGGACGCTGGTGAATCTGAAGGAGCTGTAGGAGGAGCAGGTGGAGAAGAAGCCGGCGCCGAAGCTGGTGGTGAAGTTCCAGTGGAAGGAGCGGGAGAGACGCCCGCCGGAGCAGGAGATGAAGACGGTGTCGACGCTGGAGGAGTCGCTACTGCAGTCGGAGGAGCCGCTTTCGGCGACGACGCCGGAGGCGGTTTGGTTGGAGAGGAAGCCGGAGCGGCGCCCGGAGCCTGGCCCAAGGAGCCGGCGACCAAGGCGAATAGCACGAAGAACACGAAAGCGGAGGAAGCCATGGCGGTGAAAAATGCGCAGCGAAGAGAGGAGAATGGAAGAAGAAGATCGGAAGGAAGTTGCAGAGCTTGA

Coding sequence (CDS)

ATGATAGATCCGGTGCCGGCGACTCTGTTCAAGGCAGCGCCATTGCCGGGAGTAGAGGCTGGCGACGGAGCCTGTGACGGAGGGTTTGCGATCGAAGTTTCAGGAGTCGGAGTGGACGCTGGTGAATCTGAAGGAGCTGTAGGAGGAGCAGGTGGAGAAGAAGCCGGCGCCGAAGCTGGTGGTGAAGTTCCAGTGGAAGGAGCGGGAGAGACGCCCGCCGGAGCAGGAGATGAAGACGGTGTCGACGCTGGAGGAGTCGCTACTGCAGTCGGAGGAGCCGCTTTCGGCGACGACGCCGGAGGCGGTTTGGTTGGAGAGGAAGCCGGAGCGGCGCCCGGAGCCTGGCCCAAGGAGCCGGCGACCAAGGCGAATAGCACGAAGAACACGAAAGCGGAGGAAGCCATGGCGGTGAAAAATGCGCAGCGAAGAGAGGAGAATGGAAGAAGAAGATCGGAAGGAAGTTGCAGAGCTTGA

Protein sequence

MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAGGEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPATKANSTKNTKAEEAMAVKNAQRREENGRRRSEGSCRA

Homology

[Close]

BLAST of Moc11g06660 vs. NCBI nr
Match: XP_022136125.1 (circumsporozoite protein-like [Momordica charantia])

HSP 1 Score: 277.7 bits (709), Expect = 6.1e-71
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
           MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120
           GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120

Query: 121 TKANSTKNTKAEEAMAVKNAQRREENGRRRSEGSCRA 158
           TKANSTKNTKAEEAMAVKNAQRREENGRRRSEGSCRA
Sbjct: 121 TKANSTKNTKAEEAMAVKNAQRREENGRRRSEGSCRA 157

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BLAST of Moc11g06660 vs. NCBI nr
Match: KGN60236.1 (hypothetical protein Csa_001434 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 6.9e-30
Identity = 99/147 (67.35%), Postives = 107/147 (72.79%), Query Frame = 0


Query: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
           MIDP  A LF  APLPGV+ GDGA  GGF +E  G GV  GESEGAVGGAGGEEAGA AG
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120
           GEV V+GAG TP GA  ED    GGVAT  GGA  G++AG  LVGEEAGAAPGAWP+E A
Sbjct: 61  GEVAVKGAGATPDGARGEDD---GGVATVGGGADLGEEAGDDLVGEEAGAAPGAWPREAA 120

Query: 121 TKANSTKNTKA-EEAMAV-KNAQRREE 146
            KA  T  TKA EEAM V KN +RRE+
Sbjct: 121 IKAKRTTKTKAEEEAMVVKKNGKRREK 144

[Close]

BLAST of Moc11g06660 vs. ExPASy TrEMBL
Match: A0A6J1C301 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.0e-71
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
           MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG
Sbjct: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60

Query: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120
           GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA
Sbjct: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120

Query: 121 TKANSTKNTKAEEAMAVKNAQRREENGRRRSEGSCRA 158
           TKANSTKNTKAEEAMAVKNAQRREENGRRRSEGSCRA
Sbjct: 121 TKANSTKNTKAEEAMAVKNAQRREENGRRRSEGSCRA 157

[Close]

BLAST of Moc11g06660 vs. ExPASy TrEMBL
Match: A0A0A0LJM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.3e-30
Identity = 99/147 (67.35%), Postives = 107/147 (72.79%), Query Frame = 0


Query: 1   MIDPVPATLFKAAPLPGVEAGDGACDGGFAIEVSGVGVDAGESEGAVGGAGGEEAGAEAG 60
           MIDP  A LF  APLPGV+ GDGA  GGF +E  G GV  GESEGAVGGAGGEEAGA AG
Sbjct: 1   MIDPETAILFTKAPLPGVDVGDGASAGGFEMEEDGTGVIIGESEGAVGGAGGEEAGAIAG 60

Query: 61  GEVPVEGAGETPAGAGDEDGVDAGGVATAVGGAAFGDDAGGGLVGEEAGAAPGAWPKEPA 120
           GEV V+GAG TP GA  ED    GGVAT  GGA  G++AG  LVGEEAGAAPGAWP+E A
Sbjct: 61  GEVAVKGAGATPDGARGEDD---GGVATVGGGADLGEEAGDDLVGEEAGAAPGAWPREAA 120

Query: 121 TKANSTKNTKA-EEAMAV-KNAQRREE 146
            KA  T  TKA EEAM V KN +RRE+
Sbjct: 121 IKAKRTTKTKAEEEAMVVKKNGKRREK 144

The following BLAST results are available for this feature:

BLAST of Moc11g06660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136125.1	6.1e-71	100.00	circumsporozoite protein-like [Momordica charantia]	[more]
KGN60236.1	6.9e-30	67.35	hypothetical protein Csa_001434 [Cucumis sativus]	[more]

BLAST of Moc11g06660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g06660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C301	3.0e-71	100.00	circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111007891 PE=...	[more]
A0A0A0LJM1	3.3e-30	67.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889920 PE=4 SV=1	[more]

BLAST of Moc11g06660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g06660.1	Moc11g06660.1	mRNA