Moc11g06490 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g06490
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNA-binding protein 38
Location	chr11: 4418449 .. 4421514 (+)
RNA-Seq Expression	Moc11g06490
Synteny	Moc11g06490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATACGCACATTACCGATCGCAGTTCGGAGACACGACTTTCACCAAAGTTTTTGTTGGCGGGCTGGCTTGGGAGACGCCCACTGAGGAAATGCGGAGGTATTTTGAGCAGTTTGGGGAGATTCTTGAAGCTGTGATTATTACTGATAAGAACACTGCAAAGTCTAAGGGATATGGATTTGTGAGACCTCTCTCTTCTTGCTTTTCTCTCTCGATGCGTTATGGTAAATTTTATCTTTTGTTCGTATTCTTAATGGTTTGAAATGTTTAGGTGACTTTTCGGGATCCTGAATCTGCCAGAAGGGCGTGTGCTAATCCGAACCCAGTCATTGATGGCAGACGTGCAAACTGTAACATCGCTGCATTGGGACGGCCTCGACCTTCGCCCCCTCGAGGTGTGTGACATAAGTTTCTCTTCTATTTTACCATTATTTAACGGCTAAGAAAATCACTGATAACTTAATCAGTCGAATTAGGTTCCGTTTGACAAAAATTTATTTTGGATATCTTTTGTGCACAGGACGAGCGCAGGGTGGAATTAATCCCTATCAAGGAAGCACAATGCAGGCAACGCCATCGTATAGCGGAGTGCCTGCACCATTAAACCAACCGCCACTACCGCCAGCGCCTCCGCCGCCTCCCCCGGTCGTGTATTCGCCGTACGGGTGAGTGTCGAGTTCAACTGATCCTTTTAGAAAGGGATGAAAATGATAAAAATGTCAGGAGGACTGAGCTTACTCCTCCGAGGTATTTTTCTGAAAATAGCCAATGGGGAAAAAATGGGCCATGGTGTGTGGATTGGAAAGTTAGGGTAATACTCAATAGAGCTGTCGGAGTTTATATTATAATGATGGAGAATTAAGGACTTTAAACTCAAAGTAAATATGAAACAAAAAAAAAAACAGGATTATTAACCTAAGGTTATTTGGGTGTACGAATTTGGTATGATCAGAAAACACATGGACCCATGTGGGTCTCCGTGCATCTTAATAATTATACACGGATATAATCAATTATCTTATTTTTCTTACCCCTCTCTCTATTGGTCAAAACTATACGTTTCGACTCGAATATTTGAAAGAAAGTGAGATAGAATAAGCAGTCAGTAATTTAGAGGTCTCAAGTTCGATAATACCAAAAATTATTGATGTCTCGTGAGTCCGAACCTTGGTAAGAAGTCTGAATTTAGAAGAACGATGTATAAAGCGTCGGGGCATGGAGCGTGAAAGTCAAAAGTGAGAGTGGTCCAAGGGGTTACAATTAGGTTCTTGGTTTGTGCGCATTATCCTGTCTGTGGTGAAAACTACAATCACTGTGATTTCCCCTCAGTTTTTTAACATCAAATTTACCAGAGAGATCACTTAGCAGTTTTCCACTGTGTAGAGTTCTTTCCAGCGGCCACCCACCAATTAACAACAACAACAATTCACCAATGGGAATTCTTGACCACTGACCCAAAAGAGGCAAAAAAGAAAAAAGTCACAGTCAGCCCCATTTGCCAGATTTGAGCTTGTGTTTCATAAATAGAATAGAAATCCATGACTGGTGGCTAAGGCAATTAATTAATTTCCAAACCCCATTTCCTTGTTTTGCTCTTGCAGATACCCATCTTACAGTCCTGATTATGGCTACCACCCCCAAGTTAGCCTCTCTCTTTCTCTTACTCTCTCATATTATTACTATTTTTTTCTTTTTCTTCATTGCGGCATTTACTCAAACAGTTGGTGGGCATAACAGAAATAACTCTTGTGACATTGAATTGCCGCAGGCAGTGTACAACCCACAAGTTCAACAGCCACAATACTACCATCAATCCCCATATTTGTATGGTTACTCAGTACAATCTCCCAGAGCAACATTTTCCAATGCTCCTCCTCAGTCGCATCATCACCGTGTACCGCCTTCCTATCTCTACTATCCCGCAGCGGCTCCTTCTCCTCACGCTCAATTCGAACCCTCATCCTCCTTCTCCAACTATCCTCCCCCGCCCCTCTTGCGCCACCGGTTTTCCTCTACAGGTATCTATGTCTAATAGATCTCTAAACTTTATTATAAAAGTTGCACATGAGTACCTGACACAAGTAGATAAATAGATTATATTATAAGGTAGGTAAAAAGGAAAATGAAAAGTGGGGGCCATGTGGGTAAGCCCAAGGCCATGTGAATGAGCTGTCTGGGCCATGGAAGCAGGCCAATGAAAAAGGTTGAAAGGAAATTGATGACAGAGTAGCATTTCATTATATAGACAGCTACTGCACTCTCACCTGCATTTCCATGTGTGGTTGAGTTTCCAACCTATTCTATTACCCCTTAATTCTCCCTCGAAAAATATTTGGCTCTTTCTCCATTACCAGAAAAAATTGACAATTAATTAATTTTTATAAAAAAAAAAAATTTCTACTTTTTGCATTTATAGTTCCTAATTGTCAAATATTTAATAGTGGTAAAAATAGGATTACTCTTTACGGTTAAAGAGCAAGTCCAAATATTTTCCTTCCCCCTCCCACAACATTTATGTTTCTTTCGTCAGTACCCTATCTTTTGCATTGTTGAATTTTTTATAATAAATGAAAAAAAATGATATTTTGTTTCGCTCCTAGCCAAATTAAAGAGCTGTCAAATATTTTATCTGATTGATCAGCACTTATCTAGCCGTTGACCACCGCTATCAAATTTGATGTGGCAATTGTACGGTGAGATAAGAATTAAACTTTATTAATTGATTCAGTTGAATTATGTGTGGCTTTTTCCATTTTGGTAGAGTAGACCCAAATTTTGTAGCTAGCTGTGTCCAGCTGTCTTTAGAAATGGACCACTTCCATGTTCCAAACTTCCAACCATTTTCTTTTTTTTGGTCTCAAGTTCTCAACTTAATTTACTTACTTGTATTATAAGTTACGATCCATAAATTATTATTATATTTACATTTAAATTTGATAATGAATATTAATTATTAATTATGGGTTTTCCAGATTCACAGACATCGCAGCAAACTCCCACAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGGAGCTGTTACTTCAGAAAGTCCAAGCACTTGA

mRNA sequence

ATGGCATACGCACATTACCGATCGCAGTTCGGAGACACGACTTTCACCAAAGTTTTTGTTGGCGGGCTGGCTTGGGAGACGCCCACTGAGGAAATGCGGAGGTATTTTGAGCAGTTTGGGGAGATTCTTGAAGCTGTGATTATTACTGATAAGAACACTGCAAAGTCTAAGGGATATGGATTTGTGACTTTTCGGGATCCTGAATCTGCCAGAAGGGCGTGTGCTAATCCGAACCCAGTCATTGATGGCAGACGTGCAAACTGTAACATCGCTGCATTGGGACGGCCTCGACCTTCGCCCCCTCGAGGACGAGCGCAGGGTGGAATTAATCCCTATCAAGGAAGCACAATGCAGGCAACGCCATCGTATAGCGGAGTGCCTGCACCATTAAACCAACCGCCACTACCGCCAGCGCCTCCGCCGCCTCCCCCGGTCGTGTATTCGCCGTACGGATACCCATCTTACAGTCCTGATTATGGCTACCACCCCCAAGCAGTGTACAACCCACAAGTTCAACAGCCACAATACTACCATCAATCCCCATATTTGTATGGTTACTCAGTACAATCTCCCAGAGCAACATTTTCCAATGCTCCTCCTCAGTCGCATCATCACCGTGTACCGCCTTCCTATCTCTACTATCCCGCAGCGGCTCCTTCTCCTCACGCTCAATTCGAACCCTCATCCTCCTTCTCCAACTATCCTCCCCCGCCCCTCTTGCGCCACCGGTTTTCCTCTACAGATTCACAGACATCGCAGCAAACTCCCACAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGGAGCTGTTACTTCAGAAAGTCCAAGCACTTGA

Coding sequence (CDS)

ATGGCATACGCACATTACCGATCGCAGTTCGGAGACACGACTTTCACCAAAGTTTTTGTTGGCGGGCTGGCTTGGGAGACGCCCACTGAGGAAATGCGGAGGTATTTTGAGCAGTTTGGGGAGATTCTTGAAGCTGTGATTATTACTGATAAGAACACTGCAAAGTCTAAGGGATATGGATTTGTGACTTTTCGGGATCCTGAATCTGCCAGAAGGGCGTGTGCTAATCCGAACCCAGTCATTGATGGCAGACGTGCAAACTGTAACATCGCTGCATTGGGACGGCCTCGACCTTCGCCCCCTCGAGGACGAGCGCAGGGTGGAATTAATCCCTATCAAGGAAGCACAATGCAGGCAACGCCATCGTATAGCGGAGTGCCTGCACCATTAAACCAACCGCCACTACCGCCAGCGCCTCCGCCGCCTCCCCCGGTCGTGTATTCGCCGTACGGATACCCATCTTACAGTCCTGATTATGGCTACCACCCCCAAGCAGTGTACAACCCACAAGTTCAACAGCCACAATACTACCATCAATCCCCATATTTGTATGGTTACTCAGTACAATCTCCCAGAGCAACATTTTCCAATGCTCCTCCTCAGTCGCATCATCACCGTGTACCGCCTTCCTATCTCTACTATCCCGCAGCGGCTCCTTCTCCTCACGCTCAATTCGAACCCTCATCCTCCTTCTCCAACTATCCTCCCCCGCCCCTCTTGCGCCACCGGTTTTCCTCTACAGATTCACAGACATCGCAGCAAACTCCCACAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGGAGCTGTTACTTCAGAAAGTCCAAGCACTTGA

Protein sequence

MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQATPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQSPYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPPPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST

Homology

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BLAST of Moc11g06490 vs. NCBI nr
Match: XP_022152706.1 (RNA-binding protein 38 [Momordica charantia])

HSP 1 Score: 549.3 bits (1414), Expect = 1.9e-152
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60
           MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120
           FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120

Query: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180
           PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS
Sbjct: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180

Query: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPPPLL 240
           PYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPPPLL
Sbjct: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPPPLL 240

Query: 241 RHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 278
           RHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST
Sbjct: 241 RHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 277

[Close]

BLAST of Moc11g06490 vs. NCBI nr
Match: XP_038897135.1 (RNA-binding protein 38 [Benincasa hispida])

HSP 1 Score: 403.7 bits (1036), Expect = 1.3e-108
Identity = 221/285 (77.54%), Postives = 237/285 (83.16%), Query Frame = 0


Query: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT+ MR YFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDLMRTYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTM--Q 120
           FVTFRD ESARRACAN NP+IDGRRANCNIAALGRPRPSPPRGR Q  +NPYQGSTM  Q
Sbjct: 61  FVTFRDAESARRACANANPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQVQ 120

Query: 121 ATPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY-HPQAVYNPQVQQPQYY 180
           ATPSY GVP+PLNQPPLPP PPPPPP+VYSPYGYP+YSPDYGY H QAVYNPQVQQPQ Y
Sbjct: 121 ATPSYGGVPSPLNQPPLPPPPPPPPPIVYSPYGYPAYSPDYGYQHHQAVYNPQVQQPQIY 180

Query: 181 HQSPYLYGYSVQSPRATFSNAPPQSHHHR--VPPSYLYYPAAAP---SPHAQFEPSSSFS 240
            QSPY YGYS+QSPR TF N P QSHH R  +PPSY+YYP  +P   +  AQFE +S   
Sbjct: 181 QQSPYFYGYSLQSPRGTFHN-PSQSHHPRLVLPPSYVYYPPPSPTAAAAAAQFEAAS--I 240

Query: 241 NYPPPPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 278
           NY  PPL+RHRFSSTDSQTSQQTPT      E EAG VTS+   T
Sbjct: 241 NY--PPLIRHRFSSTDSQTSQQTPT------EGEAGGVTSDQSPT 274

[Close]

BLAST of Moc11g06490 vs. NCBI nr
Match: XP_004136431.1 (RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_001640 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 3.0e-105
Identity = 217/284 (76.41%), Postives = 233/284 (82.04%), Query Frame = 0


Query: 3   YAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFV 62
           Y HYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT+KSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTM--QAT 122
           TFRDPESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q  +NPYQGSTM  QAT
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY--HPQAVYNPQVQQPQYYH 182
           PSY GVP+PLNQPP+PP PPP PPVVYSPYGYP+YSPDYGY  H QAVYNPQVQQPQ Y 
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 183 QSPYLYGYSVQSPRATFSNAPPQSHHH---RVPPSYLYYPAAAPSPHAQFEPSSSFSNYP 242
           Q+PY YGYS  S   TF N P QSH H    +PPSY+YYP   P P  QFEPSS   NYP
Sbjct: 184 QTPYYYGYS--SRGTTFPN-PSQSHQHPRLLLPPSYVYYPPPPPPP--QFEPSS--FNYP 243

Query: 243 P---PPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPS 277
           P   P ++RHRFSSTDSQTSQQTPT      EAEAG VTS+  S
Sbjct: 244 PQPQPQIIRHRFSSTDSQTSQQTPT------EAEAGGVTSDIQS 274

[Close]

BLAST of Moc11g06490 vs. NCBI nr
Match: KAG7024550.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.6 bits (976), Expect = 1.2e-101
Identity = 212/280 (75.71%), Postives = 231/280 (82.50%), Query Frame = 0


Query: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGR QGG+NPYQGSTMQA 
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180
           PSYSGVP PLNQPPL   PPPPPPVVYSPYGYP+Y+PDYGYH Q  +    QQP Y   +
Sbjct: 121 PSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTPDYGYHHQ--HYQHHQQPVY---N 180

Query: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVP-PSYLYY--PAAAPSPHAQFEPSSSFSNYPPP 240
           PY YGYS+QSPR  F  +P QSH  RV  P Y+YY  PAAA +  AQFE S S+    PP
Sbjct: 181 PYFYGYSLQSPRGAFP-SPSQSHQPRVAVPPYVYYPPPAAAAAAAAQFEGSFSY----PP 240

Query: 241 PLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 278
           PL+RHRF+STDSQTSQQTP EAEAE      AVTSE+ +T
Sbjct: 241 PLIRHRFASTDSQTSQQTPPEAEAE------AVTSETSTT 261

[Close]

BLAST of Moc11g06490 vs. NCBI nr
Match: XP_022936617.1 (RNA-binding protein 38-like [Cucurbita moschata])

HSP 1 Score: 380.2 bits (975), Expect = 1.5e-101
Identity = 212/279 (75.99%), Postives = 230/279 (82.44%), Query Frame = 0


Query: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGR QGG+NPYQGSTMQA 
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180
           PSYSGVP PLNQPPL   PPPPPPVVYSPYGYP+Y+ DYGYH Q  +    QQP Y   +
Sbjct: 121 PSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTTDYGYHHQ--HYQHHQQPVY---N 180

Query: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVP-PSYLYY-PAAAPSPHAQFEPSSSFSNYPPPP 240
           PY YGYS+QSPR  F  +P QSH  RV  P Y+YY P AA +  AQFE S S   YPPPP
Sbjct: 181 PYFYGYSLQSPRGAFP-SPSQSHQPRVAVPPYVYYPPPAAAAAAAQFEGSFS---YPPPP 240

Query: 241 LLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 278
           L+RHRF+STDSQTSQQTP EAEAE      AVTSE+ +T
Sbjct: 241 LIRHRFASTDSQTSQQTPPEAEAE------AVTSETSTT 261

[Close]

BLAST of Moc11g06490 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 116.3 bits (290), Expect = 5.5e-25
Identity = 89/198 (44.95%), Postives = 110/198 (55.56%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
           DTTFTK+FVGGL + T    +R+YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 72  RACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQG--GINP-YQGSTMQATPSYSGVPA 131
           RAC +PNP+IDGR+AN N+A LG    S   G A G   ++P     T   TP Y   PA
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIYPPA 147

Query: 132 PLNQPPLPPAPPPPPPVVYSPY-GYPSYSPDYGYHPQAVYNPQVQQPQYYHQSPYL---- 191
            +   P    P  P P + SPY  Y   SP Y  +P A Y+   Q P  Y  SP      
Sbjct: 148 IVQ--PSVVIPATPVPSLSSPYLEYTPASPAYAQYPPATYD---QYP--YAASPAAATSF 207

Query: 192 --YGYSVQSPRATFSNAP 200
             YGY    P+A  + AP
Sbjct: 208 VGYGYPAAVPQALSAAAP 218

[Close]

BLAST of Moc11g06490 vs. ExPASy Swiss-Prot
Match: Q7T3I7 (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 7.1e-25
Identity = 88/203 (43.35%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
           DTTFTK+FVGGL + T    +R+YFE FG+I EAV+ITD+ TAKS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 72  RACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQ----ATPSYSGVP 131
           RAC +PNP+IDGR+AN N+A LG  +P   +     G+     + +Q     TP Y   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQYI-YP 126

Query: 132 APLNQPPLPPAPPPPPPVVYSPY-GYPSYSPDYGYHPQAVYNPQVQQPQYYHQSP---YL 191
             + QP +    P P P + SPY  Y + +  Y ++  A Y    Q P  Y  SP   Y+
Sbjct: 127 PTIVQPSM--VIPTPIPSLQSPYIDYNAATQAYTHYTTAAYE---QYP--YAASPATGYM 186

Query: 192 -YGYS--VQSPRATFSNAPPQSH 204
            YGY+  VQ P +T + APP ++
Sbjct: 187 GYGYTSPVQQPLSTTTGAPPTAY 200

[Close]

BLAST of Moc11g06490 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-24
Identity = 88/198 (44.44%), Postives = 109/198 (55.05%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
           DTTFTK+FVGGL + T    +R+YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 72  RACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQG--GINP-YQGSTMQATPSYSGVPA 131
           RAC +PNP+IDGR+AN N+A LG    S   G A G   ++P     T   TP Y   PA
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYIYPPA 149

Query: 132 PLNQPPLPPAPPPPPPVVYSPY-GYPSYSPDYGYHPQAVYNPQVQQPQYYHQSPYL---- 191
            +   P    P  P P + SPY  Y   SP Y  +P A Y+   Q P  Y  SP      
Sbjct: 150 IVQ--PSVVIPAAPVPSLSSPYIEYTPASPAYAQYPPATYD---QYP--YAASPATAASF 209

Query: 192 --YGYSVQSPRATFSNAP 200
             Y Y    P+A  + AP
Sbjct: 210 VGYSYPAAVPQALSAAAP 220

[Close]

BLAST of Moc11g06490 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-23
Identity = 99/247 (40.08%), Postives = 124/247 (50.20%), Query Frame = 0


Query: 10  FGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVTFRDPES 69
           FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAVII+DK T +SKGYGFVTF+D ++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 70  ARRACANPNPVIDGRRANCNIAAL-GRPRPSPPRGRAQGGINPYQGSTMQATPSYSGVPA 129
           A RAC +  P+I+GRRANCN+A+L GR R SP     Q G  P  G+  +ATP + G  +
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQG--PKNGN--RATPPHVGNHS 130

Query: 130 PLNQPP-------------------LPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNP 189
               P                     P A   P        GY   +   GY+ Q    P
Sbjct: 131 QWYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQP 190

Query: 190 QVQ-QPQYYHQSPYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPS 236
           Q Q QPQYYH   ++YG      R     A P    + V P +       P P   F   
Sbjct: 191 QSQPQPQYYHH--HMYG----GGRVMVGAASPMVPFYTVYPYHQSQAIGFPQP--SFSKP 245

[Close]

BLAST of Moc11g06490 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-22
Identity = 86/248 (34.68%), Postives = 120/248 (48.39%), Query Frame = 0


Query: 12  DTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVTFRDPESAR 71
           DTTFTK+FVGGL + T    +R+YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 72  RACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQATPSYSGVPAPLN 131
           RAC +PNP+IDGR+AN N+A LG    + PR       N     T+     +   PA + 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG----AKPR-------NLQSAFTIGVQQLH---PAFIQ 126

Query: 132 QPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQSPYLYGYSVQSP 191
           +P                         +G  PQ +Y P + QP     +P     S+QSP
Sbjct: 127 RP-------------------------FGLTPQYIYPPAIVQPSVVIPTPI---PSLQSP 186

Query: 192 RATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPPPLLRHRFSSTDSQT 251
              + NA  Q+  H    +Y  YP AA        P++ +  Y     ++   S+T +  
Sbjct: 187 YIDY-NAATQAFTHYTTAAYEQYPYAA-------SPATGYMGYGYTSAVQQPLSATTTTA 204

Query: 252 SQQTPTEA 260
           +   P  A
Sbjct: 247 TTGAPPTA 204

[Close]

BLAST of Moc11g06490 vs. ExPASy TrEMBL
Match: A0A6J1DIJ5 (RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 9.3e-153
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60
           MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG
Sbjct: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60

Query: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120
           FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT
Sbjct: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120

Query: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180
           PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS
Sbjct: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180

Query: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPPPLL 240
           PYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPPPLL
Sbjct: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPSSSFSNYPPPPLL 240

Query: 241 RHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 278
           RHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST
Sbjct: 241 RHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 277

[Close]

BLAST of Moc11g06490 vs. ExPASy TrEMBL
Match: A0A0A0LGV2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.5e-105
Identity = 217/284 (76.41%), Postives = 233/284 (82.04%), Query Frame = 0


Query: 3   YAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFV 62
           Y HYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT+KSKGYGFV
Sbjct: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63

Query: 63  TFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTM--QAT 122
           TFRDPESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q  +NPYQGSTM  QAT
Sbjct: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123

Query: 123 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY--HPQAVYNPQVQQPQYYH 182
           PSY GVP+PLNQPP+PP PPP PPVVYSPYGYP+YSPDYGY  H QAVYNPQVQQPQ Y 
Sbjct: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183

Query: 183 QSPYLYGYSVQSPRATFSNAPPQSHHH---RVPPSYLYYPAAAPSPHAQFEPSSSFSNYP 242
           Q+PY YGYS  S   TF N P QSH H    +PPSY+YYP   P P  QFEPSS   NYP
Sbjct: 184 QTPYYYGYS--SRGTTFPN-PSQSHQHPRLLLPPSYVYYPPPPPPP--QFEPSS--FNYP 243

Query: 243 P---PPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPS 277
           P   P ++RHRFSSTDSQTSQQTPT      EAEAG VTS+  S
Sbjct: 244 PQPQPQIIRHRFSSTDSQTSQQTPT------EAEAGGVTSDIQS 274

[Close]

BLAST of Moc11g06490 vs. ExPASy TrEMBL
Match: A0A6J1F8X9 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 7.5e-102
Identity = 212/279 (75.99%), Postives = 230/279 (82.44%), Query Frame = 0


Query: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60
           MAY HYRSQFGDTTFTKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGR QGG+NPYQGSTMQA 
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180
           PSYSGVP PLNQPPL   PPPPPPVVYSPYGYP+Y+ DYGYH Q  +    QQP Y   +
Sbjct: 121 PSYSGVPPPLNQPPL---PPPPPPVVYSPYGYPTYTTDYGYHHQ--HYQHHQQPVY---N 180

Query: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVP-PSYLYY-PAAAPSPHAQFEPSSSFSNYPPPP 240
           PY YGYS+QSPR  F  +P QSH  RV  P Y+YY P AA +  AQFE S S   YPPPP
Sbjct: 181 PYFYGYSLQSPRGAFP-SPSQSHQPRVAVPPYVYYPPPAAAAAAAQFEGSFS---YPPPP 240

Query: 241 LLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 278
           L+RHRF+STDSQTSQQTP EAEAE      AVTSE+ +T
Sbjct: 241 LIRHRFASTDSQTSQQTPPEAEAE------AVTSETSTT 261

[Close]

BLAST of Moc11g06490 vs. ExPASy TrEMBL
Match: A0A6J1IJV9 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.7e-101
Identity = 209/278 (75.18%), Postives = 228/278 (82.01%), Query Frame = 0


Query: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60
           MAY HYRSQFGDTT TKVFVGGLAWETPT+EMRRYFEQFG+ILEAVIITDKNT+KSKGYG
Sbjct: 1   MAYPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYG 60

Query: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120
           FVTFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGR QGG+NPYQGSTMQA 
Sbjct: 61  FVTFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTMQAA 120

Query: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQS 180
           PSYSGVP PLNQPPL    PPPPPVVYSPYGYP+Y+PDYGYH    ++   QQP Y   +
Sbjct: 121 PSYSGVPPPLNQPPL----PPPPPVVYSPYGYPTYTPDYGYHQHYQHH---QQPVY---N 180

Query: 181 PYLYGYSVQSPRATFSNAPPQSHHHRVP-PSYLYYPAAAPSPHAQFEPSSSFSNYPPPPL 240
           PY YGYSVQSPR  F   P QSH  RV  P Y+YYP   P+  AQ+E S S+   PPPPL
Sbjct: 181 PYFYGYSVQSPRGAFP-IPSQSHQPRVAVPPYVYYP--PPAAAAQYEGSFSYPP-PPPPL 240

Query: 241 LRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 278
           +RHRF+STDSQTSQQTPTEAEAE      AVTSE+ +T
Sbjct: 241 IRHRFASTDSQTSQQTPTEAEAE------AVTSETSTT 258

[Close]

BLAST of Moc11g06490 vs. ExPASy TrEMBL
Match: A0A6J1AEH8 (RNA-binding protein 24 OS=Herrania umbratica OX=108875 GN=LOC110417300 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 3.4e-94
Identity = 205/291 (70.45%), Postives = 219/291 (75.26%), Query Frame = 0


Query: 1   MAYAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYG 60
           MAY HYRS FGDTT TKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNT KSKGYG
Sbjct: 1   MAYPHYRSPFGDTTLTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTGKSKGYG 60

Query: 61  FVTFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQAT 120
           FVTF DPESARRAC +PNPVIDGRRANCNIA+LGRPRPSPPRGR QG  +PYQG   Q  
Sbjct: 61  FVTFCDPESARRACVDPNPVIDGRRANCNIASLGRPRPSPPRGRNQGS-SPYQGVAQQGA 120

Query: 121 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQ- 180
           PSYSGV A     P+PP PPPPPPV+Y PYGYP+YSPDYGYH QA+YNPQ+QQPQYYHQ 
Sbjct: 121 PSYSGVAA-----PVPPPPPPPPPVIYPPYGYPTYSPDYGYH-QALYNPQIQQPQYYHQL 180

Query: 181 ---------SPYLYGYSVQSPRATFSNAPPQSHHHRVP-PSYLYYPAAAPSPHAQFEPSS 240
                    SPY YGYS+Q+PR TFS   PQ+   R+P PSYLYYP          +   
Sbjct: 181 YGSSSTTMGSPYYYGYSLQAPRGTFS--APQA--QRIPGPSYLYYPT---------QMEG 240

Query: 241 SFSNYPPPP--LLRHRF-SSTDSQTSQQTPTEAEAEAEAEAGAVTSESPST 278
           SFS YPPPP  L RH F SSTDSQT QQT T      E EAG +TSESP T
Sbjct: 241 SFSTYPPPPFHLTRHPFPSSTDSQTPQQTST------ETEAGDITSESPKT 265

[Close]

BLAST of Moc11g06490 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 233.4 bits (594), Expect = 2.2e-61
Identity = 157/299 (52.51%), Postives = 185/299 (61.87%), Query Frame = 0


Query: 4   AHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVT 63
           ++YRS FGDTT+TKVFVGGLAWETPT+EMRRYFEQFGEILEAVIITDKNT KSKGYGFVT
Sbjct: 5   SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64

Query: 64  FRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQ-GGINPYQGSTMQATPS 123
           FR+ +SA RA A+PNPVIDGR+ANCNIA+ GRPRPSPPRGR Q G  + YQ        +
Sbjct: 65  FRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPST 124

Query: 124 YSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPD-YGYHPQAVYNPQVQQPQYYHQ-- 183
           Y+G+ A     PLPPA    P ++Y  YGY +Y+PD +GYH QA+YN Q+QQ QYY Q  
Sbjct: 125 YTGMAA-----PLPPA--AAPQLMYPSYGY-TYNPDQFGYH-QALYNTQLQQAQYYQQQQ 184

Query: 184 -------------------SPYLYGYSVQSPRATFSNAPPQSHHHRVPPSYLYYPAAAPS 243
                              SPY YGYS+Q+PR       P  HHH +P  Y         
Sbjct: 185 QLYGGGATSPSSSGATIMPSPYYYGYSLQAPRV------PYQHHHHLPQPY-----NPQQ 244

Query: 244 PHAQFEPSSSFSNYP-----PPPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSES 275
            H Q   S SF  YP      PPL     SST+S+   Q    AE EA   A  +T+ +
Sbjct: 245 HHHQRFSSPSFLVYPSNSSFAPPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEITTSN 280

[Close]

BLAST of Moc11g06490 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 231.9 bits (590), Expect = 6.3e-61
Identity = 146/264 (55.30%), Postives = 176/264 (66.67%), Query Frame = 0


Query: 4   AHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVT 63
           ++YRS FGDTT+TKVFVGGLAWETPT+EMRRYFEQFGEILEAVIITDKNT KSKGYGFVT
Sbjct: 5   SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64

Query: 64  FRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQ-GGINPYQGSTMQATPS 123
           FR+ +SA RA A+PNPVIDGR+ANCNIA+ GRPRPSPPRGR Q G  + YQ        +
Sbjct: 65  FRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---GPST 124

Query: 124 YSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPD-YGYHPQAVYNPQVQQPQYYHQ-- 183
           Y+G+ A     PLPPA    P ++Y  YGY +Y+PD +GYH QA+YN Q+QQ QYY Q  
Sbjct: 125 YTGMAA-----PLPPA--AAPQLMYPSYGY-TYNPDQFGYH-QALYNTQLQQAQYYQQQQ 184

Query: 184 -------------------SPYLYGYSVQSPRATFSN-------APPQSHHHR--VPPSY 235
                              SPY YGYS+Q+PR  + +         PQ HHH+    PS+
Sbjct: 185 QLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSF 244

[Close]

BLAST of Moc11g06490 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 206.1 bits (523), Expect = 3.7e-53
Identity = 149/310 (48.06%), Postives = 177/310 (57.10%), Query Frame = 0


Query: 4   AHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVT 63
           ++YRS FGDTT TKVFVGGLAWETPT+EMRRYF+QFGEILEAVIITDK T KSKGYGFVT
Sbjct: 5   SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVT 64

Query: 64  FRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGI-NPYQGSTMQATPS 123
           FRD +SA RA A+PNPVIDGR+ANCNIA+ GRPRPS PRGR QGG  + YQG       S
Sbjct: 65  FRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG---GQSS 124

Query: 124 YSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGYHPQAVYNPQVQQPQYYHQ--- 183
           Y+G+ AP+ Q            ++Y  YGY +Y+ +YGYH QA+YN Q+QQ QYY Q   
Sbjct: 125 YTGMAAPVQQ-------AAAAQLMYPSYGY-TYNSEYGYH-QALYNAQLQQAQYYQQQMY 184

Query: 184 ---------------SPYLYGYSVQSPRATFSNAPPQSHHH----------RVP--PSYL 243
                          SPY Y     SPR    +     +HH          R+P   SYL
Sbjct: 185 GGGGATSPSSSNIMPSPYYY-LQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYL 244

Query: 244 YYPAAAPSPHAQFEPSSSFSNYPPPPLLRHRFSSTDSQTSQQT--------PTEAEAEAE 275
            YP+   +P     P+S        PL     SST+S   QQ         PT+A     
Sbjct: 245 IYPSNVEAPTPSNVPTSQ------GPL----SSSTESHAPQQVSEEGGEFDPTDAPESTT 291

[Close]

BLAST of Moc11g06490 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-39
Identity = 109/219 (49.77%), Postives = 130/219 (59.36%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET +E +R++FEQ+GEILEAV+I DKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVT 71

Query: 65  FRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTMQATPSY 124
           FRDPE+ARRACA+P P+IDGRRANCN+A+LGRPRP  P       I    G    A+P  
Sbjct: 72  FRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLP----YAVIPNMPGRLRPASPYI 131

Query: 125 SGVPAPL-----NQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY-HPQAVYNPQVQQPQYY 184
             V  P      N P   P P      V  PYG  +Y P+Y Y   Q +Y+P + Q QY 
Sbjct: 132 GNVQGPRGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQ-QYL 191

Query: 185 HQSPYLYGY--SVQSP---RATFSNAPPQSHHHRVPPSY 212
                +YG   +V SP       S   P  H +     Y
Sbjct: 192 Q----VYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGY 221

[Close]

BLAST of Moc11g06490 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.6 bits (392), Expect = 5.8e-38
Identity = 118/255 (46.27%), Postives = 146/255 (57.25%), Query Frame = 0


Query: 5   HY-RSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFVT 64
           HY  S FGDTTFTKVFVGGLAWET +E +RR+F+Q+G+ILEAV+ITDKNT +SKGYGFVT
Sbjct: 12  HYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVT 71

Query: 65  FRDPESARRACANPNPVIDGRRANCNIAALGRPRP---------SPPRGRAQGGINPYQG 124
           FRDPE+ARRAC +P P+IDGRRANCN+A+LGR RP         +P R R     +PY G
Sbjct: 72  FRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPP---SPYVG 131

Query: 125 STMQATPSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY-HPQAVYNPQVQQ 184
           S       + G   P +Q   PP       VVY PYG   Y PDY Y   Q  Y P + Q
Sbjct: 132 SVQSPRGLHFG-SHPYHQ---PPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 191

Query: 185 PQYYHQSPYLYGY--SVQSPRATF---SNAPPQSHHHRVPPSYLYYPAAAPSPHAQFEPS 244
            QY      +YG   +V SP   +   S+  P +H +     Y +  +      A    S
Sbjct: 192 -QYLQ----VYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMS 251

The following BLAST results are available for this feature:

BLAST of Moc11g06490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152706.1	1.9e-152	100.00	RNA-binding protein 38 [Momordica charantia]	[more]
XP_038897135.1	1.3e-108	77.54	RNA-binding protein 38 [Benincasa hispida]	[more]
XP_004136431.1	3.0e-105	76.41	RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_00...	[more]
KAG7024550.1	1.2e-101	75.71	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022936617.1	1.5e-101	75.99	RNA-binding protein 38-like [Cucurbita moschata]	[more]

BLAST of Moc11g06490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q62176	5.5e-25	44.95	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q7T3I7	7.1e-25	43.35	RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2	[more]
Q9H0Z9	2.1e-24	44.44	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q9M1S3	2.3e-23	40.08	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6DIV4	1.5e-22	34.68	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1	[more]

BLAST of Moc11g06490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIJ5	9.3e-153	100.00	RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1	[more]
A0A0A0LGV2	1.5e-105	76.41	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV...	[more]
A0A6J1F8X9	7.5e-102	75.99	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 S...	[more]
A0A6J1IJV9	3.7e-101	75.18	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=...	[more]
A0A6J1AEH8	3.4e-94	70.45	RNA-binding protein 24 OS=Herrania umbratica OX=108875 GN=LOC110417300 PE=4 SV=1	[more]

BLAST of Moc11g06490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	2.2e-61	52.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	6.3e-61	55.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	3.7e-53	48.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	1.4e-39	49.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	5.8e-38	46.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 7.2E-25 score: 98.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..76 e-value: 4.2E-17 score: 61.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..93 score: 16.670687
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..110 e-value: 6.9E-26 score: 92.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..277
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..262
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 7.724E-45 score: 144.295
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..262
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g06490.1	Moc11g06490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding