Moc11g05820 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g05820
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Polyamine-modulated factor 1-binding protein
Location	chr11: 3852372 .. 3853848 (+)
RNA-Seq Expression	Moc11g05820
Synteny	Moc11g05820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCTCTCCACAAAAACCCGACGATCAGCTTATTAATCTGCCGGAAACTGAATCGCAGCTCTCAGTTCTCATCATCGGTACGCTTCTTCGTCTCTATCTCTCTCTATCTCTTTAAGGCACACACTCAAAATCGCCTGCCTGACATTGTTGTTGAGCTAAGTTAATCGTTGCTTATGCTAATGAGGAAAACCAGAAATGTTAATTGTTCAAAAATTTCTGCCTAAAGAAGTAAAAATTGCTTCCAGAAACGCTAGCTGAATAAAACTTTGTCTCGATTACATTTGATAATGCTCACTTTTTCCATTCTGGTACTACGAATTTGTGTAACTCAAATCCAAAATAGATAGCGTTGTTTGTTTTAGACAAATTATTGAACAAATCGGCGGTGTAGTTGTAATTTTTTAAGACAAAGAGGTATTTGTATTCTTAAACTAAGAGTCTGCCTGCTTCAAGATGTACTAAGAGTCGGCTTCTCCAAAATGTTGCCTCTATTGTACATTCATTTTTTTTTTCTTTACACTACTTGAGTCGTGAATGATGTTCATACACGATCAATCTTCACGTCTCATCATCCTCCCTTCGTTTTTATTTATAGTGCATCTTTTATTTGATTCCTTGCTTCACATAACCGTAATTTTCAAGTTCTGTAGTTCTGGAATGAGAAGTGATTTGTATTAATTCTCTTGCTTCGCGGTGGTCGTATACGGAGAAAGGTTGCTATTTCTGCAGAATTTATAGGCTTATAAGTCATACCAGGATAAATGCTAACTCATGTAATTATATCTGTTTTGGAGAGAGGCTGTAAATCATAGCCGATAACCGACGAAAACTTTGGAATAACAAGTAATATCAGTTTAACAAGACGTGATTGTTATTATCGGAAAATCATTTTGTCGTTCTGTCTCTTTCTTTGCATGTTGAAGAGTTGATCACTCTCTGATCTTCGAATTATTTTGTGTCATTCGATTGGAAAACGCTGGTTCTGATATATTTATACGCTAGCGCAGATATGTCACAACAGGTCCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGGTTTGTTCATTATCAACAATAGCTCGATTTACTTTTTTGTTAAAAAAATATTGTGAGTAATGTCGTTAAAATAGTACAACTAGCACCGCCGCTTTGCTCTTTGTCGCCCTCCAACACCATCTATCTTCCCATTTCTCATCTGTCGATATCTGAATTTTTTCCACCCCCAAAGACGCTGAAATTAATGGAATGTAACGTAATAATAGTACGTCCTAATGCTAACCGTAATCTTCTCTTTTTCAACCGTTTGCAGTGAAATTGATCAAAATGCTGTTGGAATAATGGAAGACATAGAGAAGTGCAGGGGTTCTGCTCTTGACAGGAAGGGAGTCCTCGAGGAAGAGAAACAACAATTTCAGCAAGCTGCTTACACTGTTTTAGACATGCTCAACAACAGACAGGGAACGCTGTAA

mRNA sequence

ATGGCAACCTCTCCACAAAAACCCGACGATCAGCTTATTAATCTGCCGGAAACTGAATCGCAGCTCTCAGTTCTCATCATCGATATGTCACAACAGGTCCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGTGAAATTGATCAAAATGCTGTTGGAATAATGGAAGACATAGAGAAGTGCAGGGGTTCTGCTCTTGACAGGAAGGGAGTCCTCGAGGAAGAGAAACAACAATTTCAGCAAGCTGCTTACACTGTTTTAGACATGCTCAACAACAGACAGGGAACGCTGTAA

Coding sequence (CDS)

ATGGCAACCTCTCCACAAAAACCCGACGATCAGCTTATTAATCTGCCGGAAACTGAATCGCAGCTCTCAGTTCTCATCATCGATATGTCACAACAGGTCCAAGGGGCTATGGAGAACATGCTTAGAATGATCAGTGAAATTGATCAAAATGCTGTTGGAATAATGGAAGACATAGAGAAGTGCAGGGGTTCTGCTCTTGACAGGAAGGGAGTCCTCGAGGAAGAGAAACAACAATTTCAGCAAGCTGCTTACACTGTTTTAGACATGCTCAACAACAGACAGGGAACGCTGTAA

Protein sequence

MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL

Homology

[Close]

BLAST of Moc11g05820 vs. NCBI nr
Match: XP_022140976.1 (uncharacterized protein LOC111011497 [Momordica charantia])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK 60
          MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK
Sbjct: 1  MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK 60

Query: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL 98
          CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL
Sbjct: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL 97

[Close]

BLAST of Moc11g05820 vs. NCBI nr
Match: XP_038898230.1 (uncharacterized protein LOC120085955 isoform X2 [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK 60
          MATS  KP DQLI LPE+ESQLS LI D+SQQ QGAME+MLRMISEIDQNAVGI+EDIEK
Sbjct: 1  MATSESKPHDQLIPLPESESQLSALIFDISQQAQGAMESMLRMISEIDQNAVGIVEDIEK 60

Query: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL 98
          CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN +GTL
Sbjct: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGEGTL 97

[Close]

BLAST of Moc11g05820 vs. NCBI nr
Match: XP_038898231.1 (uncharacterized protein LOC120085955 isoform X3 [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK 60
          MATS  KP DQLI LPE+ESQLS LI D+SQQ QGAME+MLRMISEIDQNAVGI+EDIEK
Sbjct: 1  MATSESKPHDQLIPLPESESQLSALIFDISQQAQGAMESMLRMISEIDQNAVGIVEDIEK 60

Query: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL 98
          CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN +GTL
Sbjct: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGEGTL 97

[Close]

BLAST of Moc11g05820 vs. NCBI nr
Match: XP_038898229.1 (uncharacterized protein LOC120085955 isoform X1 [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 2.0e-35
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 1  MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK 60
          MATS  KP DQLI LPE+ESQLS LI D+SQQ QGAME+MLRMISEIDQNAVGI+EDIEK
Sbjct: 1  MATSESKPHDQLIPLPESESQLSALIFDISQQAQGAMESMLRMISEIDQNAVGIVEDIEK 60

Query: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL 98
          CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN +GTL
Sbjct: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGEGTL 97

[Close]

BLAST of Moc11g05820 vs. NCBI nr
Match: XP_008466349.1 (PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-33
Identity = 84/101 (83.17%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MATSPQKPDDQLI------NLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGI 60
           MATS  KP+DQLI      +LPE ESQLS LI D+SQQ QGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  MEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQG 96
           +EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNR G
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGG 101

[Close]

BLAST of Moc11g05820 vs. ExPASy TrEMBL
Match: A0A6J1CHL8 (uncharacterized protein LOC111011497 OS=Momordica charantia OX=3673 GN=LOC111011497 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK 60
          MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK
Sbjct: 1  MATSPQKPDDQLINLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEK 60

Query: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL 98
          CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL
Sbjct: 61 CRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL 97

[Close]

BLAST of Moc11g05820 vs. ExPASy TrEMBL
Match: A0A5A7TBQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007070 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.2e-34
Identity = 84/101 (83.17%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MATSPQKPDDQLI------NLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGI 60
           MATS  KP+DQLI      +LPE ESQLS LI D+SQQ QGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  MEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQG 96
           +EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNR G
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGG 101

[Close]

BLAST of Moc11g05820 vs. ExPASy TrEMBL
Match: A0A1S3CR82 (uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.2e-34
Identity = 84/101 (83.17%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MATSPQKPDDQLI------NLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGI 60
           MATS  KP+DQLI      +LPE ESQLS LI D+SQQ QGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  MEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQG 96
           +EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNR G
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGG 101

[Close]

BLAST of Moc11g05820 vs. ExPASy TrEMBL
Match: A0A0A0LJE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 83/101 (82.18%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 1   MATSPQKPDDQLI------NLPETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGI 60
           MATS  KP+DQLI      +LPE+ESQLS LI D+SQQ QGAMENMLRMISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  MEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQG 96
           +EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN  G
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 101

[Close]

BLAST of Moc11g05820 vs. ExPASy TrEMBL
Match: A0A6J1FEZ1 (uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC111443468 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.8e-33
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MATSPQKPDDQLINLP--------ETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAV 60
           MA+S  KP+DQLI LP        E+ESQLSVL+  +SQQ QGAMENMLRMISEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQGTL 98
           GI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN  GTL
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGTL 105

[Close]

BLAST of Moc11g05820 vs. TAIR 10
Match: AT5G25570.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 5.9e-22
Identity = 54/99 (54.55%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1  MATSPQKPDDQLINL----PETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIME 60
          MA SP + D QL+       + +S L+ L+ +MSQQVQ  MENML+M+ EIDQN+VGI E
Sbjct: 1  MAESPSQSDAQLVAHQSPGQQADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSVGIKE 60

Query: 61 DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQG 96
          +IEK +  A+++K +LEEEK QFQ+AAYT+LDML+N +G
Sbjct: 61 EIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]

BLAST of Moc11g05820 vs. TAIR 10
Match: AT5G25570.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 5.9e-22
Identity = 54/99 (54.55%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1  MATSPQKPDDQLINL----PETESQLSVLIIDMSQQVQGAMENMLRMISEIDQNAVGIME 60
          MA SP + D QL+       + +S L+ L+ +MSQQVQ  MENML+M+ EIDQN+VGI E
Sbjct: 1  MAESPSQSDAQLVAHQSPGQQADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSVGIKE 60

Query: 61 DIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRQG 96
          +IEK +  A+++K +LEEEK QFQ+AAYT+LDML+N +G
Sbjct: 61 EIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

[Close]

BLAST of Moc11g05820 vs. TAIR 10
Match: AT5G25570.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 91.3 bits (225), Expect = 4.7e-19
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 26  IIDMSQQVQGAMENMLRMISEIDQNAVGIMEDIEKCRGSALDRKGVLEEEKQQFQQAAYT 85
           I +MSQQVQ  MENML+M+ EIDQN+VGI E+IEK +  A+++K +LEEEK QFQ+AAYT
Sbjct: 62  IAEMSQQVQMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYT 121

Query: 86  VLDMLNNRQG 96
           +LDML+N +G
Sbjct: 122 ILDMLSNSRG 131

The following BLAST results are available for this feature:

BLAST of Moc11g05820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140976.1	3.3e-43	100.00	uncharacterized protein LOC111011497 [Momordica charantia]	[more]
XP_038898230.1	2.0e-35	86.60	uncharacterized protein LOC120085955 isoform X2 [Benincasa hispida]	[more]
XP_038898231.1	2.0e-35	86.60	uncharacterized protein LOC120085955 isoform X3 [Benincasa hispida]	[more]
XP_038898229.1	2.0e-35	86.60	uncharacterized protein LOC120085955 isoform X1 [Benincasa hispida]	[more]
XP_008466349.1	1.1e-33	83.17	PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo]	[more]

BLAST of Moc11g05820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g05820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHL8	1.6e-43	100.00	uncharacterized protein LOC111011497 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A5A7TBQ0	5.2e-34	83.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CR82	5.2e-34	83.17	uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=...	[more]
A0A0A0LJE0	2.0e-33	82.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1	[more]
A0A6J1FEZ1	5.8e-33	79.05	uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]

BLAST of Moc11g05820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25570.1	5.9e-22	54.55	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT5G25570.2	5.9e-22	54.55	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT5G25570.3	4.7e-19	64.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36800	POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g05820.1	Moc11g05820.1	mRNA