Moc11g00970 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g00970
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	LYR motif-containing protein 2
Location	chr11: 633228 .. 633692 (+)
RNA-Seq Expression	Moc11g00970
Synteny	Moc11g00970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTCTCCCTTGATTTACATGAATTTATTCTACGGGCAAGGGTGTTGAAACTGTTCAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACGCTAGAGGTTAAGCTCCTGATCATGAACATCCACTCTTTATACAATTTTCCTGTCATGATCTTCAAAGTTCATTTGAATTTTCCTTATCAGCATTAACAACGATGGGGTTGATCCAATGTCTATGCTTAATTCTTTGAATTCAAAAAGGTTTCCCCAGTTCTTTAATTGGATAAGGTGTTGTTTTGGTTTATTCTTGAGAATGTCTGTTTTGATTTTGAACAGAGGAACTGAGGCATACGATCAGGCAAGAAATGGAAAACAACCGCAGCTGTAATGACAAACAGAAAGTTAGGTATCTGATCAGTGAAGGAATAGAGAGTTTGAAGCGTTTAGACGAGATGTTGGATATGCAAGGTCATTCATAA

mRNA sequence

ATGGTTGTCTCCCTTGATTTACATGAATTTATTCTACGGGCAAGGGTGTTGAAACTGTTCAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACGCTAGAGAGGAACTGAGGCATACGATCAGGCAAGAAATGGAAAACAACCGCAGCTGTAATGACAAACAGAAAGTTAGGTATCTGATCAGTGAAGGAATAGAGAGTTTGAAGCGTTTAGACGAGATGTTGGATATGCAAGGTCATTCATAA

Coding sequence (CDS)

ATGGTTGTCTCCCTTGATTTACATGAATTTATTCTACGGGCAAGGGTGTTGAAACTGTTCAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACGCTAGAGAGGAACTGAGGCATACGATCAGGCAAGAAATGGAAAACAACCGCAGCTGTAATGACAAACAGAAAGTTAGGTATCTGATCAGTGAAGGAATAGAGAGTTTGAAGCGTTTAGACGAGATGTTGGATATGCAAGGTCATTCATAA

Protein sequence

MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRYLISEGIESLKRLDEMLDMQGHS

Homology

[Close]

BLAST of Moc11g00970 vs. NCBI nr
Match: XP_022140612.1 (uncharacterized protein LOC111011218 [Momordica charantia] >XP_022140617.1 uncharacterized protein LOC111011218 [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 8.2e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 83
          LISEGIESLKRLDEMLDMQGHS
Sbjct: 61 LISEGIESLKRLDEMLDMQGHS 82

[Close]

BLAST of Moc11g00970 vs. NCBI nr
Match: XP_023535371.1 (uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 3.6e-30
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNRSC+D+QKVR+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 83
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

[Close]

BLAST of Moc11g00970 vs. NCBI nr
Match: KAG6591251.1 (LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 8.0e-30
Identity = 71/82 (86.59%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNRSC+D+QKVR+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 83
          L+SEG+E LKRLDEMLDMQGHS
Sbjct: 61 LLSEGMERLKRLDEMLDMQGHS 82

[Close]

BLAST of Moc11g00970 vs. NCBI nr
Match: XP_022936861.1 (uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 uncharacterized protein LOC111443321 [Cucurbita moschata])

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNR C+D+QKVR+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 83
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

[Close]

BLAST of Moc11g00970 vs. NCBI nr
Match: XP_038877724.1 (uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877725.1 uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877726.1 uncharacterized protein LOC120069952 [Benincasa hispida])

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 69/82 (84.15%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          M +SLDL +FILRARVLKL+RQALRTARKAPVHAREEL+HT+RQEMENNR+CN++QK+RY
Sbjct: 3  MALSLDLQDFILRARVLKLYRQALRTARKAPVHAREELKHTMRQEMENNRNCNERQKIRY 62

Query: 61 LISEGIESLKRLDEMLDMQGHS 83
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 63 LVSEGIERLKRLDEMLDMQGHS 84

[Close]

BLAST of Moc11g00970 vs. ExPASy TrEMBL
Match: A0A6J1CHJ1 (uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011218 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.0e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 83
          LISEGIESLKRLDEMLDMQGHS
Sbjct: 61 LISEGIESLKRLDEMLDMQGHS 82

[Close]

BLAST of Moc11g00970 vs. ExPASy TrEMBL
Match: A0A6J1F8N3 (uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC111443321 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.0e-30
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNR C+D+QKVR+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 83
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

[Close]

BLAST of Moc11g00970 vs. ExPASy TrEMBL
Match: A0A6J1IFA5 (uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNRSC+D+QK+R+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 83
          L+SEG E LKRLDEMLDMQGHS
Sbjct: 61 LLSEGRERLKRLDEMLDMQGHS 82

[Close]

BLAST of Moc11g00970 vs. ExPASy TrEMBL
Match: A0A6J1FM54 (uncharacterized protein LOC111446466 OS=Cucurbita moschata OX=3662 GN=LOC111446466 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 68/81 (83.95%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV+SLDL EFILRARVLKL+R ALRTA+KAPVHAREELRHTIRQEMENNR CN++QKVR+
Sbjct: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGH 82
          L+SEGIE LKRL+EMLDMQG+
Sbjct: 61 LLSEGIERLKRLEEMLDMQGN 81

[Close]

BLAST of Moc11g00970 vs. ExPASy TrEMBL
Match: A0A6J1IY12 (uncharacterized protein LOC111480962 OS=Cucurbita maxima OX=3661 GN=LOC111480962 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.4e-26
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV+SLDL EFILRARVLKL+RQALR A+KAPVHAREELR  IRQEMENNR CN++QKVR+
Sbjct: 1  MVLSLDLQEFILRARVLKLYRQALRIAQKAPVHAREELRLAIRQEMENNRGCNERQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGH 82
          L+SEGIE LKRL+EMLDMQG+
Sbjct: 61 LLSEGIERLKRLEEMLDMQGN 81

[Close]

BLAST of Moc11g00970 vs. TAIR 10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-27
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 2  VVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRYL 61
          +V LDL  FILRARVLKL+RQAL+ A +APVH R EL+ T+RQEME NR CNDKQK+RYL
Sbjct: 1  MVQLDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYL 60

Query: 62 ISEGIESLKRLDEMLDMQGH 82
          ISEG+E +K LDEMLDMQGH
Sbjct: 61 ISEGLERIKGLDEMLDMQGH 80

The following BLAST results are available for this feature:

BLAST of Moc11g00970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140612.1	8.2e-35	100.00	uncharacterized protein LOC111011218 [Momordica charantia] >XP_022140617.1 uncha...	[more]
XP_023535371.1	3.6e-30	87.80	uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372....	[more]
KAG6591251.1	8.0e-30	86.59	LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022936861.1	1.0e-29	86.59	uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 unchar...	[more]
XP_038877724.1	1.0e-29	84.15	uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877725.1 unchara...	[more]

BLAST of Moc11g00970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g00970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHJ1	4.0e-35	100.00	uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1F8N3	5.0e-30	86.59	uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]
A0A6J1IFA5	1.5e-29	85.37	uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418...	[more]
A0A6J1FM54	3.6e-28	83.95	uncharacterized protein LOC111446466 OS=Cucurbita moschata OX=3662 GN=LOC1114464...	[more]
A0A6J1IY12	3.4e-26	81.48	uncharacterized protein LOC111480962 OS=Cucurbita maxima OX=3661 GN=LOC111480962...	[more]

BLAST of Moc11g00970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76065.1	1.8e-27	73.75	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 1..81
None	No IPR available	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 1..81
None	No IPR available	CDD	cd20262	Complex1_LYR_LYRM2	coord: 11..72 e-value: 8.76265E-16 score: 62.9386
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..70 e-value: 3.5E-16 score: 59.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g00970.1	Moc11g00970.1	mRNA