Moc11g00590 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g00590
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	High mobility group B protein 2
Location	chr11: 360048 .. 361766 (-)
RNA-Seq Expression	Moc11g00590
Synteny	Moc11g00590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCCCCCGCGGTAGTCGCACCACCAACGAATATTAGCAGAGAAAACACAAAGGGGCGGAGACAGAGAGAAGGGGAAGAGATCTTAAATTCTGGATGACGTGGGCCAATAGGGTGAGAGTGCGCGGATTGATGAGGTGGCAATAAATTTAGAATCCCGCCTAAACCCCTGTTTTCATTTGGTGCGCAATTGAATTTCAATTTGGCCTCTCGGACTTAATATCTCTCTTCTTTTTACTATCTTTCGGTTCCCCTTTCCTCACACGCAGGTCCGCTCCCTCCACCCTCTTCAAACCCTAAACCTAACCCAGCCTCGCTCCGGAGCCCCCCACCGAGGTTCGTTTCATCGATCTCCTTCCAATTCCGACCTAATTTCACGTCTTTTCATTGTTTTCCTTCGAGATTGTTGCTGATCCGATCTTATAACTGCAGGATTCGACATGAAAGGTGGAAAATCGAAGTCCGAGTCGAAGAAAGCAGACGCGAAGTGAGTTTTTTTTTTTTTTTTCTCGCCCTATTTCTCCGTCGGATGTGTTTAATTTATAGCTCTGATCGGCCCTAGATTTAAGAAGCTTCGTTGCTTAAATTACCTTTGTAAAAGCTATGCGTTGACCTTTTCTTTTTTGATTGATCGGTTTTGGCGATCTTTTTTGTAGGCTTTCTGTGAAGAAAGGTGCAGCCAAAGCGGGCGCAACACGGGGTAAGAAAGCAGGGAAGGATCCTAACAAACCTAAGCGGCCGGCCAGTGCCTTCTTCGTTTTTATGTAATTATTTCATTTTTCAATTTACTTTTAGATGTCTGAATTACGCTGCTTGACTGCAAATTATTCATTCGGATGGTTGTAGAGTTGGAAAAATTGCAAACAAGGAAGAAAAGAACTATGAAGTTGTTTTCGGTGATTTTTGTTTAAGGATGTTAAATAAGCCGGCTTTCAACAAAACGATCTCTGTGTTATATGTGTATTTAGCTAGTGGACCCGTTCTTTTGTTTTATCTGTAAGTCGATTACGTATCTAAAATCTGTGTTGTCATGTTGTTGCACGTTTTGTAATTAAAGGGAGGAGTTCAGGAAGAAGTTTAATGAAGAGAATCCGAATAACAAAGCAGTATCCGCTGTAAGCTATTTACCTTTGTCTAATTGTCAATTCTTTTTTCTTGTCCCCATTTCATATTATATAAATTCTTTTATGGAAATGAGCAGTTATAATTGACCTACAAATGATACCATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCAGATGCTGTACGTGATACCTCTCGTAGTATTTTCTAAATTTCTCCTGGTATTATAAACTCTGTCTGAATTACTGTTTATAATATCAGGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGTACTGAAAACTTTCCGAATCTTATATTTTGCAGCTGTATTTTATTTTGTAAATTCATTATCTCTCCCTGCTCCATTTGAGTTCAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAGTCCATGTCTGAGGTGAATGATGATGAGGATGGAGACGAGGGCAGCGAAGAGGTTAGTGGGTTGAAGAATTTTTTCCAGTCATTATTGTGCTTTGTACCCTTTCACTTATTTCATTTCTCTCTTGTGGTTGCAGGAGGAAGATGACGAGTAA

mRNA sequence

ATGCCTTTCCCCCGCGGATTCGACATGAAAGGTGGAAAATCGAAGTCCGAGTCGAAGAAAGCAGACGCGAAGCTTTCTGTGAAGAAAGGTGCAGCCAAAGCGGGCGCAACACGGGGTAAGAAAGCAGGGAAGGATCCTAACAAACCTAAGCGGCCGGCCAGTGCCTTCTTCGTTTTTATGGAGGAGTTCAGGAAGAAGTTTAATGAAGAGAATCCGAATAACAAAGCAGTATCCGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAGTCCATGTCTGAGGTGAATGATGATGAGGATGGAGACGAGGGCAGCGAAGAGGAGGAAGATGACGAGTAA

Coding sequence (CDS)

ATGCCTTTCCCCCGCGGATTCGACATGAAAGGTGGAAAATCGAAGTCCGAGTCGAAGAAAGCAGACGCGAAGCTTTCTGTGAAGAAAGGTGCAGCCAAAGCGGGCGCAACACGGGGTAAGAAAGCAGGGAAGGATCCTAACAAACCTAAGCGGCCGGCCAGTGCCTTCTTCGTTTTTATGGAGGAGTTCAGGAAGAAGTTTAATGAAGAGAATCCGAATAACAAAGCAGTATCCGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCATTGTCAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCTGAAGAAGATGAATCTGAGAAGTCCATGTCTGAGGTGAATGATGATGAGGATGGAGACGAGGGCAGCGAAGAGGAGGAAGATGACGAGTAA

Protein sequence

MPFPRGFDMKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEEEDDE

Homology

[Close]

BLAST of Moc11g00590 vs. NCBI nr
Match: XP_022142588.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-66
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           EEDESEKSMSEVNDDEDGDEGSEEEEDDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 149

[Close]

BLAST of Moc11g00590 vs. NCBI nr
Match: XP_038896795.1 (HMG1/2-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 243.8 bits (621), Expect = 9.8e-61
Identity = 137/149 (91.95%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSKS+SKKADAKL+VKKGAA AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSDSKKADAKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKS++DAEKAPYIAKADKRK+EYEKNMKAYNKKQASGANA 
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKIEYEKNMKAYNKKQASGANAE 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           EEDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 149

[Close]

BLAST of Moc11g00590 vs. NCBI nr
Match: KAG6591217.1 (DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-59
Identity = 135/152 (88.82%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 6   GFDMKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRK 65
           GF+MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRK
Sbjct: 223 GFEMKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRK 282

Query: 66  KFNEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 125
           KFNEENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGA
Sbjct: 283 KFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGA 342

Query: 126 NAAEEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           NAAEEDESEKS+SEVNDDE+GDEGSEEE+DDE
Sbjct: 343 NAAEEDESEKSVSEVNDDEEGDEGSEEEDDDE 374

[Close]

BLAST of Moc11g00590 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 138/149 (92.62%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSKSESKKAD KL+VKKGA  AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           +EDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

[Close]

BLAST of Moc11g00590 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7024101.1 hypothetical protein SDJN02_12914, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.0 bits (598), Expect = 4.6e-58
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           EEDESEKS+SEVNDDE+GDEGSEEE+DDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

[Close]

BLAST of Moc11g00590 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.9e-47
Identity = 114/152 (75.00%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSV-KKGAA-KAGATRGK-KAGKDPNKPKRPASAFFVFMEEFRK 68
           MKGGKSK+ESK+AD KL+V KKGAA KA    GK KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 69  KFNEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 128
            FN+E+P NKAVSAVGKAAG KWK++SDAEKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 129 NAAEEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
              +E+ESEKS+SEVND++D +EGS EEEDD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of Moc11g00590 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-41
Identity = 103/149 (69.13%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           E++ES+KS+SEVND++D ++GSEEEEDD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Moc11g00590 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.4e-39
Identity = 99/149 (66.44%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPAKG----AKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           E++ES+KS+SEVND++D ++GSEEEEDD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Moc11g00590 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-36
Identity = 96/149 (64.43%), Postives = 121/149 (81.21%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSK+   K+D KL+VKK AA    T  KKA KDPNKPKRP SAFFVFME+FRK + 
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKT--KKAVKDPNKPKRPPSAFFVFMEDFRKTYK 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           E++PNNK+V+ VGKA G KWK L+ AEKAP+I+KA+KRK EYEKN++AYNKKQA+G  AA
Sbjct: 61  EKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           EE+ES+KS SEVNDD++  +GS E++ ++
Sbjct: 121 EEEESDKSRSEVNDDDEDQDGSGEDDSED 142

[Close]

BLAST of Moc11g00590 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-35
Identity = 99/158 (62.66%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVK-KGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKF 68
           MKG KSK  + KADAKL+VK KGA K    R  KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 69  NEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 128
            E+NP NK+V+AVGKAAG +WKSLS+++KAPY+AKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 129 A--------EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           A        +E+ES+KS SEVN DED +EGSEE+EDD+
Sbjct: 121 APAKEEEEEDEEESDKSKSEVN-DEDDEEGSEEDEDDD 156

[Close]

BLAST of Moc11g00590 vs. ExPASy TrEMBL
Match: A0A6J1CNM1 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.9e-67
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           EEDESEKSMSEVNDDEDGDEGSEEEEDDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 149

[Close]

BLAST of Moc11g00590 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.9e-60
Identity = 138/149 (92.62%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSKSESKKAD KL+VKKGA  AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           +EDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

[Close]

BLAST of Moc11g00590 vs. ExPASy TrEMBL
Match: A0A6J1FF34 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.2e-58
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           EEDESEKS+SEVNDDE+GDEGSEEE+DDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

[Close]

BLAST of Moc11g00590 vs. ExPASy TrEMBL
Match: A0A6J1IF57 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.9e-58
Identity = 132/149 (88.59%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKSKSESKKAD KL+VKKGAA AG    KKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKS+S+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           EEDESEKS+SEVNDDE+GDEGSEEE+DD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 149

[Close]

BLAST of Moc11g00590 vs. ExPASy TrEMBL
Match: A0A5A7VCD7 (HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003710 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.6e-54
Identity = 130/149 (87.25%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKGGKS         KL+VKKGA  AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKS---------KLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           +EDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 138

[Close]

BLAST of Moc11g00590 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 170.6 bits (431), Expect = 9.8e-43
Identity = 103/149 (69.13%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           E++ES+KS+SEVND++D ++GSEEEEDD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Moc11g00590 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-42
Identity = 102/148 (68.92%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDD 157
           E++ES+KS+SEVND++D ++GSEEE+DD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of Moc11g00590 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-41
Identity = 100/147 (68.03%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKG KSK+E++   +KLSV K  AK GA RGK A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           +ENP NK+V+ VGKAAG KWKSLSD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEED 156
           E++ES+KS+SEVND++D ++GSEE++D
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEDDD 142

[Close]

BLAST of Moc11g00590 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 161.8 bits (408), Expect = 4.6e-40
Identity = 99/149 (66.44%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPAKG----AKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 158
           E++ES+KS+SEVND++D ++GSEEEEDD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Moc11g00590 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 157.5 bits (397), Expect = 8.6e-39
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 0


Query: 9   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 68
           MKG KSK+E++    KLSV K  AK      K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPAKG----AKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 69  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 128
           EE+P NK+V+AVGKA G+KWKSLSD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 129 EEDESEKSMSEVNDDEDGDEGSEE 153
           E++ES+KS+SEVND++D ++GSEE
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEE 136

The following BLAST results are available for this feature:

BLAST of Moc11g00590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142588.1	2.0e-66	100.00	HMG1/2-like protein [Momordica charantia]	[more]
XP_038896795.1	9.8e-61	91.95	HMG1/2-like protein isoform X1 [Benincasa hispida]	[more]
KAG6591217.1	1.1e-59	88.82	DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_008452973.1	1.4e-59	92.62	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_022936925.1	4.6e-58	89.26	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]

BLAST of Moc11g00590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	4.9e-47	75.00	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
O49596	1.4e-41	69.13	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P93047	6.4e-39	66.44	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	1.3e-36	64.43	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P27347	1.5e-35	62.66	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of Moc11g00590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNM1	9.9e-67	100.00	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1	[more]
A0A1S3BW96	6.9e-60	92.62	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]
A0A6J1FF34	2.2e-58	89.26	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1	[more]
A0A6J1IF57	4.9e-58	88.59	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1	[more]
A0A5A7VCD7	9.6e-54	87.25	HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G...	[more]

BLAST of Moc11g00590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20693.1	9.8e-43	69.13	high mobility group B2	[more]
AT1G20693.3	2.2e-42	68.92	high mobility group B2	[more]
AT1G20693.2	1.1e-41	68.03	high mobility group B2	[more]
AT1G20696.1	4.6e-40	66.44	high mobility group B3	[more]
AT1G20696.3	8.6e-39	65.97	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..27
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 9..156
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 49..115 e-value: 6.47267E-15 score: 63.4157
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 48..119 e-value: 1.6E-26 score: 104.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 49..118 e-value: 3.4E-24 score: 85.1
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 49..118 score: 20.742489
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 32..134 e-value: 1.7E-26 score: 94.5
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 38..123
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 9..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc11g00590.1	Moc11g00590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin