Moc10g30360 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g30360
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RING-H2 finger protein ATL8
Location	chr10: 22926323 .. 22926877 (+)
RNA-Seq Expression	Moc10g30360
Synteny	Moc10g30360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGCTATATCACACGCCTGGCTGCCAATACGTCTCAGGCGGCGCCTCCGCCTGAGGCCGTCGCCTTGGAGTCCGACTTCGTCGTCATTCTCGCCGCGCTCCTCTGTGCCCTAATTTGTATGGTAGGCCTAATAGCGGTGGCTCGCTGCGCCTGGCTCCGCCGTGCCGCGGGACCCGCGCCCAATCACGCGTCTGCCAATAAGGGCTTGAAGAAGAAGATCCTGCAATCGCTCCCCAAATTCACCTACACTTCCTCCGCGCAGGCCAAATTTCCGCCGGAATGTGCGATCTGCTTGGCAGAGTTCGCGGAGGGGGACCAGATCCGGGTGCTGCCGCAGTGCGGCCATTGCTTCCACCTCGGCTGCGTAGACACCTGGCTCGGCTCCCACTCCTCCTGCCCCTCTTGCCGCCAGATTCTGGTCGTCGCGAGGTGTCAGAAGTGCGGCGAGTTCCCGGCCGTCGTCGGCGGCGCTCACAACGACAACGAGGAGGAGCAGCAGAGGAGGGAAGATAACAATGCTAATACCGCCGGTTTGGGATTCTTGCCTTGA

mRNA sequence

ATGACTCGCTATATCACACGCCTGGCTGCCAATACGTCTCAGGCGGCGCCTCCGCCTGAGGCCGTCGCCTTGGAGTCCGACTTCGTCGTCATTCTCGCCGCGCTCCTCTGTGCCCTAATTTGTATGGTAGGCCTAATAGCGGTGGCTCGCTGCGCCTGGCTCCGCCGTGCCGCGGGACCCGCGCCCAATCACGCGTCTGCCAATAAGGGCTTGAAGAAGAAGATCCTGCAATCGCTCCCCAAATTCACCTACACTTCCTCCGCGCAGGCCAAATTTCCGCCGGAATGTGCGATCTGCTTGGCAGAGTTCGCGGAGGGGGACCAGATCCGGGTGCTGCCGCAGTGCGGCCATTGCTTCCACCTCGGCTGCGTAGACACCTGGCTCGGCTCCCACTCCTCCTGCCCCTCTTGCCGCCAGATTCTGGTCGTCGCGAGGTGTCAGAAGTGCGGCGAGTTCCCGGCCGTCGTCGGCGGCGCTCACAACGACAACGAGGAGGAGCAGCAGAGGAGGGAAGATAACAATGCTAATACCGCCGGTTTGGGATTCTTGCCTTGA

Coding sequence (CDS)

ATGACTCGCTATATCACACGCCTGGCTGCCAATACGTCTCAGGCGGCGCCTCCGCCTGAGGCCGTCGCCTTGGAGTCCGACTTCGTCGTCATTCTCGCCGCGCTCCTCTGTGCCCTAATTTGTATGGTAGGCCTAATAGCGGTGGCTCGCTGCGCCTGGCTCCGCCGTGCCGCGGGACCCGCGCCCAATCACGCGTCTGCCAATAAGGGCTTGAAGAAGAAGATCCTGCAATCGCTCCCCAAATTCACCTACACTTCCTCCGCGCAGGCCAAATTTCCGCCGGAATGTGCGATCTGCTTGGCAGAGTTCGCGGAGGGGGACCAGATCCGGGTGCTGCCGCAGTGCGGCCATTGCTTCCACCTCGGCTGCGTAGACACCTGGCTCGGCTCCCACTCCTCCTGCCCCTCTTGCCGCCAGATTCTGGTCGTCGCGAGGTGTCAGAAGTGCGGCGAGTTCCCGGCCGTCGTCGGCGGCGCTCACAACGACAACGAGGAGGAGCAGCAGAGGAGGGAAGATAACAATGCTAATACCGCCGGTTTGGGATTCTTGCCTTGA

Protein sequence

MTRYITRLAANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAGPAPNHASANKGLKKKILQSLPKFTYTSSAQAKFPPECAICLAEFAEGDQIRVLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRREDNNANTAGLGFLP

Homology

[Close]

BLAST of Moc10g30360 vs. NCBI nr
Match: XP_023539225.1 (RING-H2 finger protein ATL8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.5 bits (737), Expect = 4.1e-74
Identity = 148/194 (76.29%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MTRYITRLAANTSQA-----APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTRY   LA NTS A     APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 41  MTRYFQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 100

Query: 61  RA--AGPAPNHASANKGLKKKILQSLPKFTYTSS---AQAKFPPECAICLAEFAEGDQIR 120
           R   +G A N ASAN+GLKKKILQSLPKFTY +S    + KF  ECAICLAEF +G++IR
Sbjct: 101 RGSNSGGAGNQASANRGLKKKILQSLPKFTYRASGSGGEGKFAAECAICLAEFLDGEEIR 160

Query: 121 VLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRR 180
            LPQCGHCFH+ CVDTWL SHSSCPSCRQILVVARCQKCGEFPAVV G  ++NEEEQ+RR
Sbjct: 161 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNNEEEQKRR 220

Query: 181 EDNNANTAGLGFLP 185
           EDNN N  GLGFLP
Sbjct: 221 EDNNGNNRGLGFLP 234

[Close]

BLAST of Moc10g30360 vs. NCBI nr
Match: XP_022971423.1 (RING-H2 finger protein ATL8 [Cucurbita maxima])

HSP 1 Score: 285.4 bits (729), Expect = 3.4e-73
Identity = 146/194 (75.26%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MTRYITRLAANTSQA-----APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTRY+  LA NTS A     APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 41  MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 100

Query: 61  RAA--GPAPNHASANKGLKKKILQSLPKFTYTSS---AQAKFPPECAICLAEFAEGDQIR 120
           R +  G A N ASAN+GLKKKILQSLPKF Y +S    + KF  ECAICLAEF +G++IR
Sbjct: 101 RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIR 160

Query: 121 VLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRR 180
            LPQCGHCFH+ CVDTWL SHSSCPSCRQILVVARCQKCG+FPAVV G  ++NEEEQ+RR
Sbjct: 161 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQKRR 220

Query: 181 EDNNANTAGLGFLP 185
           EDNN N  GLGFLP
Sbjct: 221 EDNNGNNRGLGFLP 234

[Close]

BLAST of Moc10g30360 vs. NCBI nr
Match: XP_022933605.1 (RING-H2 finger protein ATL8 [Cucurbita moschata])

HSP 1 Score: 284.3 bits (726), Expect = 7.7e-73
Identity = 146/194 (75.26%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MTRYITRLAANTSQA-----APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTRY   LA NTS A     APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RAA--GPAPNHASANKGLKKKILQSLPKFTYTSS---AQAKFPPECAICLAEFAEGDQIR 120
           R +  G A N ASAN+GLKKKILQSLPKF Y +S    + KF  ECAICLAEF +G++IR
Sbjct: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEEIR 120

Query: 121 VLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRR 180
            LPQCGHCFH+ CVDTWL SHSSCPSCRQILVVARCQKCGEFPAVV G  +++EEEQ+RR
Sbjct: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNDEEEQKRR 180

Query: 181 EDNNANTAGLGFLP 185
           EDNN N  GLGFLP
Sbjct: 181 EDNNGNNRGLGFLP 194

[Close]

BLAST of Moc10g30360 vs. NCBI nr
Match: KAG6596287.1 (RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-72
Identity = 146/194 (75.26%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 1   MTRYITRLAANTSQA-----APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTRY   LA NTS A     APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RAA--GPAPNHASANKGLKKKILQSLPKFTYTSS---AQAKFPPECAICLAEFAEGDQIR 120
           R +  G A N ASAN+GLKKKILQSLPKF Y +S    + KF  ECAICLAEF +G++IR
Sbjct: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEEIR 120

Query: 121 VLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRR 180
            LPQCGHCFH+ CVDTWL SHSSCPSCRQILVVARCQKCGEFPAVV G  ++ EEEQ+RR
Sbjct: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNTEEEQKRR 180

Query: 181 EDNNANTAGLGFLP 185
           EDNN N  GLGFLP
Sbjct: 181 EDNNGNNRGLGFLP 194

[Close]

BLAST of Moc10g30360 vs. NCBI nr
Match: XP_038904164.1 (RING-H2 finger protein ATL80-like [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 144/186 (77.42%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MTRYITRLAANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAGP 60
           MTRYI  LA NTS  APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLRR  G 
Sbjct: 1   MTRYIRALAGNTS-LAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLRRGGGS 60

Query: 61  APNHASANKGLKKKILQSLPKFTYTSS-AQAKFPPECAICLAEFAEGDQIRVLPQCGHCF 120
           A N ASAN+GLKKKILQSLPKF Y S+  + K   ECAICLAEF EG++IR LPQCGHCF
Sbjct: 61  AGNQASANRGLKKKILQSLPKFKYKSTGGEGKIAAECAICLAEFLEGEEIRQLPQCGHCF 120

Query: 121 HLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVV-GGAHNDNEEEQQRREDNNANTA 180
           H+ CVDTWLGSHSSCPSCRQILVVARCQKCG+FPAVV GGA ++NEE     EDNN    
Sbjct: 121 HVSCVDTWLGSHSSCPSCRQILVVARCQKCGQFPAVVQGGAAHNNEEV----EDNN---R 178

Query: 181 GLGFLP 185
           GLGFLP
Sbjct: 181 GLGFLP 178

[Close]

BLAST of Moc10g30360 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.8e-48
Identity = 109/194 (56.19%), Postives = 132/194 (68.04%), Query Frame = 0


Query: 1   MTRYITRL--AANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAA 60
           M R + RL   +NT   A      AL SD VVILAALLCALIC++GLIAV+RC WLRR A
Sbjct: 1   MARLLFRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLA 60

Query: 61  ------------GPAPNHASANKGLKKKILQSLPKFTYT-SSAQAKFPPECAICLAEFAE 120
                        P P  A+ANKGLKKK+LQSLPK T++  S +++   ECAICLAEF+ 
Sbjct: 61  AGNRTVSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSA 120

Query: 121 GDQIRVLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFP-AVVGGAHNDNE 176
           GD++RVLPQCGH FH+ C+DTWLGSHSSCPSCRQILVVARC KCG  P +   G  ++ E
Sbjct: 121 GDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPE 180

[Close]

BLAST of Moc10g30360 vs. ExPASy Swiss-Prot
Match: Q8LC69 (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-46
Identity = 98/179 (54.75%), Postives = 118/179 (65.92%), Query Frame = 0


Query: 1   MTRYITRLAANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAG- 60
           M R + RL    +  +P   +    SD V+ILA LLCAL C++GLIAV+RCAWLRR A  
Sbjct: 1   MARLLFRLLQEANSTSPAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASR 60

Query: 61  ------PAPNHASANKGLKKKILQSLPKFTYT-SSAQAKFPPECAICLAEFAEGDQIRVL 120
                   P  A+ANKGLKKK+L+SLPK TY+  S  A+   ECAICL EFA GD++RVL
Sbjct: 61  NRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVL 120

Query: 121 PQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRRE 172
           PQCGH FH+ C+DTWLGSHSSCPSCRQILVV RC KCG  P         +   +QR +
Sbjct: 121 PQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQRED 179

[Close]

BLAST of Moc10g30360 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-40
Identity = 91/159 (57.23%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 5   ITRLAANTSQAAPPP----EAVALESDFVVILAALLCALICMVGLIAVARCAWLRR--AA 64
           +TR +     AAPPP    E +A ESD VVIL+ALLCALIC+ GL AV RCAWLRR  A 
Sbjct: 1   MTRPSRLLETAAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAG 60

Query: 65  GPAPNHASANKGLKKKILQSLPKFTYT-------SSAQAKFPPECAICLAEFAEGDQIRV 124
           G +P   S NKGLKKK LQSLP+ T+T       ++A+     ECAICL +FA+G++IRV
Sbjct: 61  GDSP---SPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRV 120

Query: 125 LPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCG 151
           LP CGH FH+ C+D WL S SSCPSCR+IL   RC +CG
Sbjct: 121 LPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCG 156

[Close]

BLAST of Moc10g30360 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 84/158 (53.16%), Postives = 102/158 (64.56%), Query Frame = 0


Query: 12  TSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAGPAP----NHASA 71
           T+   PP E +A E+D VVIL+ALLCAL+C+ GL AVARCAWLRR  G  P         
Sbjct: 10  TASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP 69

Query: 72  NKGLKKKILQSLPKFTYTSSA---------------QAKFPPECAICLAEFAEGDQIRVL 131
           NKGLKKK LQ+LPK TYT+SA                     ECAIC+ EF+EG++IR+L
Sbjct: 70  NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRIL 129

Query: 132 PQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCG 151
           P C H FH+ C+D WL S SSCPSCR+ILV  +C +CG
Sbjct: 130 PLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCG 167

[Close]

BLAST of Moc10g30360 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-24
Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 23  ALESDFVVILAALLCALICMVGLIAVARCA--WLRRAA---GPAPNHASANKGLKKKILQ 82
           ++++  V+ILAALLCALIC +G+ +V RC     RR      P   +A+  KG+KK+ L+
Sbjct: 36  SMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALK 95

Query: 83  SLPKFTYTSSAQAKFPPECAICLAEFAEGDQIRVLPQCGHCFHLGCVDTWLGSHSSCPSC 142
            +P  +Y+   + K   EC ICL +F EG+ +RVLP+C H FH+ C+DTWL SHSSCP+C
Sbjct: 96  VIPVDSYSPELKMK-ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTC 155

[Close]

BLAST of Moc10g30360 vs. ExPASy TrEMBL
Match: A0A6J1I6T7 (RING-H2 finger protein ATL8 OS=Cucurbita maxima OX=3661 GN=LOC111470152 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 146/194 (75.26%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MTRYITRLAANTSQA-----APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTRY+  LA NTS A     APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 41  MTRYLQALAGNTSSATATATAPPPEAVAIESDFVVILAALLCALICMVGLIAVARCAWLR 100

Query: 61  RAA--GPAPNHASANKGLKKKILQSLPKFTYTSS---AQAKFPPECAICLAEFAEGDQIR 120
           R +  G A N ASAN+GLKKKILQSLPKF Y +S    + KF  ECAICLAEF +G++IR
Sbjct: 101 RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEGKFAAECAICLAEFLDGEEIR 160

Query: 121 VLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRR 180
            LPQCGHCFH+ CVDTWL SHSSCPSCRQILVVARCQKCG+FPAVV G  ++NEEEQ+RR
Sbjct: 161 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGDFPAVVHGDDHNNEEEQKRR 220

Query: 181 EDNNANTAGLGFLP 185
           EDNN N  GLGFLP
Sbjct: 221 EDNNGNNRGLGFLP 234

[Close]

BLAST of Moc10g30360 vs. ExPASy TrEMBL
Match: A0A6J1F5B4 (RING-H2 finger protein ATL8 OS=Cucurbita moschata OX=3662 GN=LOC111440980 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.7e-73
Identity = 146/194 (75.26%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MTRYITRLAANTSQA-----APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLR 60
           MTRY   LA NTS A     APPPEAVA+ESDFVVILAALLCALICMVGLIAVARCAWLR
Sbjct: 1   MTRYFQALAGNTSSATATATAPPPEAVAMESDFVVILAALLCALICMVGLIAVARCAWLR 60

Query: 61  RAA--GPAPNHASANKGLKKKILQSLPKFTYTSS---AQAKFPPECAICLAEFAEGDQIR 120
           R +  G A N ASAN+GLKKKILQSLPKF Y +S    + KF  ECAICLAEF +G++IR
Sbjct: 61  RGSNGGGAGNQASANRGLKKKILQSLPKFAYRASGSGGEEKFAAECAICLAEFLDGEEIR 120

Query: 121 VLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRR 180
            LPQCGHCFH+ CVDTWL SHSSCPSCRQILVVARCQKCGEFPAVV G  +++EEEQ+RR
Sbjct: 121 QLPQCGHCFHVSCVDTWLSSHSSCPSCRQILVVARCQKCGEFPAVVHGGDHNDEEEQKRR 180

Query: 181 EDNNANTAGLGFLP 185
           EDNN N  GLGFLP
Sbjct: 181 EDNNGNNRGLGFLP 194

[Close]

BLAST of Moc10g30360 vs. ExPASy TrEMBL
Match: A0A0A0L622 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G000150 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.1e-68
Identity = 140/187 (74.87%), Postives = 152/187 (81.28%), Query Frame = 0


Query: 1   MTRYITRLAANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAGP 60
           M+ YI  L ANTS +APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRR    
Sbjct: 1   MSPYIRALTANTS-SAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRG--- 60

Query: 61  APNHASANKGLKKKILQSLPKFTYTSS-AQAKFPPECAICLAEFAEGDQIRVLPQCGHCF 120
             N ASAN+GLKKKILQSLPKF Y S+    K   ECAICLAEF EG++IR LPQCGHCF
Sbjct: 61  --NQASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCF 120

Query: 121 HLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVV--GGAHNDNEEEQQRREDNNANT 180
           H+ CVDTWLG+HSSCPSCRQILVVARCQKCG+FPA V  GGAHN+ EEE +   +NN N 
Sbjct: 121 HVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPADVQGGGAHNNEEEEVEDNINNNNNN 180

Query: 181 AGLGFLP 185
            GLGFLP
Sbjct: 181 RGLGFLP 181

[Close]

BLAST of Moc10g30360 vs. ExPASy TrEMBL
Match: A0A5D3CJ22 (RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00120 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.8e-67
Identity = 141/186 (75.81%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MTRYITRLAANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAGP 60
           M+ YI  L ANTS +APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRR    
Sbjct: 1   MSPYIRALTANTS-SAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRG--- 60

Query: 61  APNHASANKGLKKKILQSLPKFTYTSS-AQAKFPPECAICLAEFAEGDQIRVLPQCGHCF 120
             N ASAN+GLKKKILQSLPKF Y S+    K   ECAICLAEF EG++IR LPQCGHCF
Sbjct: 61  --NQASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCF 120

Query: 121 HLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVV-GGAHNDNEEEQQRREDNNANTA 180
           H+ CVDTWLG+HSSCPSCRQILVVARCQKCG+FPAVV GGA ++NEEE+   EDNN +  
Sbjct: 121 HVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEEV--EDNNNDNR 178

Query: 181 GLGFLP 185
           GLGFLP
Sbjct: 181 GLGFLP 178

[Close]

BLAST of Moc10g30360 vs. ExPASy TrEMBL
Match: A0A1S3BKT0 (RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103491102 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.8e-67
Identity = 141/186 (75.81%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MTRYITRLAANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAGP 60
           M+ YI  L ANTS +APPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRR    
Sbjct: 1   MSPYIRALTANTS-SAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRG--- 60

Query: 61  APNHASANKGLKKKILQSLPKFTYTSS-AQAKFPPECAICLAEFAEGDQIRVLPQCGHCF 120
             N ASAN+GLKKKILQSLPKF Y S+    K   ECAICLAEF EG++IR LPQCGHCF
Sbjct: 61  --NQASANRGLKKKILQSLPKFRYKSTVGDGKIAAECAICLAEFLEGEEIRQLPQCGHCF 120

Query: 121 HLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVV-GGAHNDNEEEQQRREDNNANTA 180
           H+ CVDTWLG+HSSCPSCRQILVVARCQKCG+FPAVV GGA ++NEEE+   EDNN +  
Sbjct: 121 HVSCVDTWLGTHSSCPSCRQILVVARCQKCGQFPAVVQGGAADNNEEEEV--EDNNNDNR 178

Query: 181 GLGFLP 185
           GLGFLP
Sbjct: 181 GLGFLP 178

[Close]

BLAST of Moc10g30360 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 191.8 bits (486), Expect = 4.8e-49
Identity = 109/194 (56.19%), Postives = 132/194 (68.04%), Query Frame = 0


Query: 1   MTRYITRL--AANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAA 60
           M R + RL   +NT   A      AL SD VVILAALLCALIC++GLIAV+RC WLRR A
Sbjct: 1   MARLLFRLLVESNTPSPAIDNSTAALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLA 60

Query: 61  ------------GPAPNHASANKGLKKKILQSLPKFTYT-SSAQAKFPPECAICLAEFAE 120
                        P P  A+ANKGLKKK+LQSLPK T++  S +++   ECAICLAEF+ 
Sbjct: 61  AGNRTVSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSA 120

Query: 121 GDQIRVLPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFP-AVVGGAHNDNE 176
           GD++RVLPQCGH FH+ C+DTWLGSHSSCPSCRQILVVARC KCG  P +   G  ++ E
Sbjct: 121 GDELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPE 180

[Close]

BLAST of Moc10g30360 vs. TAIR 10
Match: AT1G76410.1 (RING/U-box superfamily protein )

HSP 1 Score: 187.6 bits (475), Expect = 9.1e-48
Identity = 98/179 (54.75%), Postives = 118/179 (65.92%), Query Frame = 0


Query: 1   MTRYITRLAANTSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAG- 60
           M R + RL    +  +P   +    SD V+ILA LLCAL C++GLIAV+RCAWLRR A  
Sbjct: 1   MARLLFRLLQEANSTSPAEASPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIASR 60

Query: 61  ------PAPNHASANKGLKKKILQSLPKFTYT-SSAQAKFPPECAICLAEFAEGDQIRVL 120
                   P  A+ANKGLKKK+L+SLPK TY+  S  A+   ECAICL EFA GD++RVL
Sbjct: 61  NRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVL 120

Query: 121 PQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCGEFPAVVGGAHNDNEEEQQRRE 172
           PQCGH FH+ C+DTWLGSHSSCPSCRQILVV RC KCG  P         +   +QR +
Sbjct: 121 PQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQRED 179

[Close]

BLAST of Moc10g30360 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 91/159 (57.23%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 5   ITRLAANTSQAAPPP----EAVALESDFVVILAALLCALICMVGLIAVARCAWLRR--AA 64
           +TR +     AAPPP    E +A ESD VVIL+ALLCALIC+ GL AV RCAWLRR  A 
Sbjct: 1   MTRPSRLLETAAPPPQPSEEMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAG 60

Query: 65  GPAPNHASANKGLKKKILQSLPKFTYT-------SSAQAKFPPECAICLAEFAEGDQIRV 124
           G +P   S NKGLKKK LQSLP+ T+T       ++A+     ECAICL +FA+G++IRV
Sbjct: 61  GDSP---SPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRV 120

Query: 125 LPQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCG 151
           LP CGH FH+ C+D WL S SSCPSCR+IL   RC +CG
Sbjct: 121 LPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCG 156

[Close]

BLAST of Moc10g30360 vs. TAIR 10
Match: AT4G35480.1 (RING-H2 finger A3B )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 84/158 (53.16%), Postives = 102/158 (64.56%), Query Frame = 0


Query: 12  TSQAAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRAAGPAP----NHASA 71
           T+   PP E +A E+D VVIL+ALLCAL+C+ GL AVARCAWLRR  G  P         
Sbjct: 10  TASPPPPEEILAAETDMVVILSALLCALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPP 69

Query: 72  NKGLKKKILQSLPKFTYTSSA---------------QAKFPPECAICLAEFAEGDQIRVL 131
           NKGLKKK LQ+LPK TYT+SA                     ECAIC+ EF+EG++IR+L
Sbjct: 70  NKGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRIL 129

Query: 132 PQCGHCFHLGCVDTWLGSHSSCPSCRQILVVARCQKCG 151
           P C H FH+ C+D WL S SSCPSCR+ILV  +C +CG
Sbjct: 130 PLCSHAFHVACIDKWLTSRSSCPSCRRILVPVKCDRCG 167

[Close]

BLAST of Moc10g30360 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-26
Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 23  ALESDFVVILAALLCALICMVGLIAVARCA--WLRRAA---GPAPNHASANKGLKKKILQ 82
           ++++  V+ILAALLCALIC +G+ +V RC     RR      P   +A+  KG+KK+ L+
Sbjct: 36  SMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALK 95

Query: 83  SLPKFTYTSSAQAKFPPECAICLAEFAEGDQIRVLPQCGHCFHLGCVDTWLGSHSSCPSC 142
            +P  +Y+   + K   EC ICL +F EG+ +RVLP+C H FH+ C+DTWL SHSSCP+C
Sbjct: 96  VIPVDSYSPELKMK-ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTC 155

The following BLAST results are available for this feature:

BLAST of Moc10g30360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539225.1	4.1e-74	76.29	RING-H2 finger protein ATL8 [Cucurbita pepo subsp. pepo]	[more]
XP_022971423.1	3.4e-73	75.26	RING-H2 finger protein ATL8 [Cucurbita maxima]	[more]
XP_022933605.1	7.7e-73	75.26	RING-H2 finger protein ATL8 [Cucurbita moschata]	[more]
KAG6596287.1	1.0e-72	75.26	RING-H2 finger protein ATL80, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038904164.1	1.1e-68	77.42	RING-H2 finger protein ATL80-like [Benincasa hispida]	[more]

BLAST of Moc10g30360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM69	6.8e-48	56.19	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q8LC69	1.3e-46	54.75	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2	[more]
O22755	2.3e-40	57.23	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9ZT49	1.5e-39	53.16	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9FLC6	1.4e-24	47.20	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]

BLAST of Moc10g30360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6T7	1.7e-73	75.26	RING-H2 finger protein ATL8 OS=Cucurbita maxima OX=3661 GN=LOC111470152 PE=4 SV=...	[more]
A0A6J1F5B4	3.7e-73	75.26	RING-H2 finger protein ATL8 OS=Cucurbita moschata OX=3662 GN=LOC111440980 PE=4 S...	[more]
A0A0A0L622	6.1e-68	74.87	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G000150 P...	[more]
A0A5D3CJ22	1.8e-67	75.81	RING-H2 finger protein ATL80 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BKT0	1.8e-67	75.81	RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103491102 PE=4 SV=1	[more]

BLAST of Moc10g30360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20823.1	4.8e-49	56.19	RING/U-box superfamily protein	[more]
AT1G76410.1	9.1e-48	54.75	RING/U-box superfamily protein	[more]
AT2G17450.1	1.7e-41	57.23	RING-H2 finger A3A	[more]
AT4G35480.1	1.1e-40	53.16	RING-H2 finger A3B	[more]
AT5G05280.1	9.8e-26	47.20	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 96..137 e-value: 1.7E-6 score: 37.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 95..138 e-value: 3.3E-14 score: 52.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 96..138 score: 12.563043
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 60..142 e-value: 1.5E-23 score: 84.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..184
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 1..168
None	No IPR available	PANTHER	PTHR45798:SF61	E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED	coord: 1..168
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 95..138 e-value: 3.89409E-15 score: 64.2535
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 95..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g30360.1	Moc10g30360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane