Moc10g29930 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g29930
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	SKP1-like protein
Location	chr10: 22603459 .. 22606038 (+)
RNA-Seq Expression	Moc10g29930
Synteny	Moc10g29930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTCCCCAACGTCTCCAGCAAGATCTTGGCCAAGGTCATCGAGTATTGCCGCAAGCACGTCGACGCTTCCAACTCCGAGCCGCGCGCCTCTGAAGAAGACCTCAAGGCCTGGGACCGGGACTTCGTTAATGTTGATCAAGCTACTCTCTTCGATCTCATTCTGGTGATTCCTTTTTCGCGCTTTAGATCTCGTCGATTTTCTACGGTTTTCGATGTTTCTGATTGTTTTCTGTAGCCATCGACGCTGTACCGTTTGCCTGTTTGGTGCGATTTAGTTGTTTAGGGTTTTGAATCTTTGATTCGGAACGGAAATTTTTAGGGCTCTCGCTTTGATTTCTTTGTCGCAGATGACTGTCCGTCGAGCGTTGAGTTCTTTTCCTTTCAAATCGTTTATTCTTCTTTATCTGTATCGGCGTTTGCAATTGGTTGCTGTTAGGGATCGGTAGGGAAAGTTCTGTAGCATTAAAGTTCTCTGTTGTAGTTATGCAAATATCAATTTCTATGGTGTCTATGAATCAATAGAGACATGTCCGTTGCACTTTGATGATTGAAGCTGGTGATGCAAAAGGTGGTGGTATCTTTATCTTTTGCGCTTCTTGCGGAGATTCGGATTAATGATATGATGCTAAAGACGTCTGTATATGTGGTTATGATTTCAGATTTCTTATTTTTTGGGGTGTTAGCACGGTTTCATATTGTCAAATGATTGTTGCTTAGGTTGAAAACGCACGTATATGCCTAAATTTAAGCCATATTCTTGTTTCAGAAATTTCAAGCTGCCTGGGGATTTTTTATTGTTGTCCATAGTTTCTTGATTTTGCCCCATATTATTAATTTGTTCTTTATGCTATCCTGCAGGCTGCAAATTATCTGAACATCAAGAACTTGTTAGACCTAACATGCCAGACTGTTGCTGATATGATCAAGGGGAAGACCCCAGAGGAGATCCGGAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTTTGAATGATTTTAAGCCTCATAAGAGTGATCAAAGATATTGATCTGTATGGCTGTACATAGTACTAGTAGCATGTATGCACTTCTTTTTAGTTCTTTTGGGTGTATTTAAGCACTGTGGTATTCACATTGAGTTTGAAATGGTACCTTTTGAACCTAATCATCATTGTATAATTTTTTTTCTAATGATCAATTCTGTGAGCAAAGCAGTGGTTACCTAGTTTCTGTTTGGACCTATGCTTTAATTATCTTGTCTCGTAATTGCAACTTTCGAGGGAAGGGGGGGAAGCTAGCCAGCCATTCGGGCTGACTTCCCACCCAAAGCCTCAAGTTCTTAATACCAAATATTACCAGGGAACCAGAAAGGTGTCTCTCTCATGGGGAAGGATCAAGTTCATCTGTTACAAATTTCAGCTTCGCAGTTCAAAGATATCAGAAAAGAGAGAGCAAGAAAAGGCCTCGACCTCCTCTACCGAAACTGTACAGGAAGAATGATGCTAGAATTGGTAACTCCGCAACTACTTGTTTCCTTACAGGCATTGACTTAGTGTACTGAATATGAGTAATATAACGCCTTTCTTATCTTTTGGTGCATCTCATGTTTTTTACTAATTTGAGGTGATCTGTATAATTCTCAGAAAAGAAAGTCTTTTCTTGTAGTTTATAACCATGATTCTGATTTGTATCCAATAGTCAAGGCATGTAGTAGGCAGTCTAATTAATTTTTGATGGGTGAGTTTCCTTTGAGTGTGGGTAATTAAAAAGTACTAAAGATTGGTGATTGATGCCAATGTTAAAGCTAATACAAAATCGACCCTAAAACCAACCAATAAGAGAGACATTGACTGCAGAAAATGTGACTGATTTTCTTATTGAAATGTGATGAAGTTTATTATGAGAAAGGTCAAGAGTAACTCTCCTGTTTAGGTGCCAACCGCTTTGTGCATGACTCTATGCAATCCTTCTTCTTCACCAATCTAACCACTCTTCCAACCCACGCAATATACCTGAACACCAAATTAGCCTCTTTTTTTCTCTCATCTCTTCCTCATTCCATTAAAAAGATCAACCTGAATTCTAACTCTCTTCATTGATTGCAAATGGTTTTCAACAGGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAGGAAGGCCGAAACTCAAGCAAAAAACTCTGCTTCCTCACGGTGGCGATTCAACTCTCCGGCAGATGGTGGAGGATGAGTCCCGGATACCTGATTGTGTCACTCTTTCAAGCTCGGGGAAGGCGTTGGAGGGGGAGATGTGCTGCTGCGTGTGCTTGTCGAGTATAGAAGAAGGGATTGAAACGAGTGTTCTTCCTTGCTTGCACGAGTTTCACAAGGTATGTGTCGATCGGTGGTTTGAAGAGCGTCGGAGAACTTGTCCGATATGCCGGTACTCAATGGAAGGAGCAGGGCAGGGTAATGAAAATGGGACTCAGATTCTCACAGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTCTAA

mRNA sequence

ATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTCCCCAACGTCTCCAGCAAGATCTTGGCCAAGGTCATCGAGTATTGCCGCAAGCACGTCGACGCTTCCAACTCCGAGCCGCGCGCCTCTGAAGAAGACCTCAAGGCCTGGGACCGGGACTTCGTTAATGTTGATCAAGCTACTCTCTTCGATCTCATTCTGGCTGCAAATTATCTGAACATCAAGAACTTGTTAGACCTAACATGCCAGACTGTTGCTGATATGATCAAGGGGAAGACCCCAGAGGAGATCCGGAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGGAACCAGAAAGGTGTCTCTCTCATGGGGAAGGATCAAGTTCATCTGTTACAAATTTCAGCTTCGCAGTTCAAAGATATCAGAAAAGAGAGAGCAAGAAAAGGCCTCGACCTCCTCTACCGAAACTGTACAGGAAGAATGATGCTAGAATTGGTAACTCCGCAACTACTTGTTTCCTTACAGGCATTGACTTAGTGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAGGAAGGCCGAAACTCAAGCAAAAAACTCTGCTTCCTCACGGTGGCGATTCAACTCTCCGGCAGATGGTGGAGGATGAGTCCCGGATACCTGATTGTGTCACTCTTTCAAGCTCGGGGAAGGCGTTGGAGGGGGAGATGTGCTGCTGCGTGTGCTTGTCGAGTATAGAAGAAGGGATTGAAACGAGTGTTCTTCCTTGCTTGCACGAGTTTCACAAGGTATGTGTCGATCGGTGGTTTGAAGAGCGTCGGAGAACTTGTCCGATATGCCGGTACTCAATGGAAGGAGCAGGGCAGGGTAATGAAAATGGGACTCAGATTCTCACAGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTCTAA

Coding sequence (CDS)

ATGATCGAGGACGATTGCGCCGATAACGGCATCCCTCTCCCCAACGTCTCCAGCAAGATCTTGGCCAAGGTCATCGAGTATTGCCGCAAGCACGTCGACGCTTCCAACTCCGAGCCGCGCGCCTCTGAAGAAGACCTCAAGGCCTGGGACCGGGACTTCGTTAATGTTGATCAAGCTACTCTCTTCGATCTCATTCTGGCTGCAAATTATCTGAACATCAAGAACTTGTTAGACCTAACATGCCAGACTGTTGCTGATATGATCAAGGGGAAGACCCCAGAGGAGATCCGGAAGACCTTTAACATCAAGAACGACTTCACACCGGAGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGGAACCAGAAAGGTGTCTCTCTCATGGGGAAGGATCAAGTTCATCTGTTACAAATTTCAGCTTCGCAGTTCAAAGATATCAGAAAAGAGAGAGCAAGAAAAGGCCTCGACCTCCTCTACCGAAACTGTACAGGAAGAATGATGCTAGAATTGGTAACTCCGCAACTACTTGTTTCCTTACAGGCATTGACTTAGTGGTGTTCTTCTTCTTCTACAACTTCATCGGCTTCCGAGGAAGGCCGAAACTCAAGCAAAAAACTCTGCTTCCTCACGGTGGCGATTCAACTCTCCGGCAGATGGTGGAGGATGAGTCCCGGATACCTGATTGTGTCACTCTTTCAAGCTCGGGGAAGGCGTTGGAGGGGGAGATGTGCTGCTGCGTGTGCTTGTCGAGTATAGAAGAAGGGATTGAAACGAGTGTTCTTCCTTGCTTGCACGAGTTTCACAAGGTATGTGTCGATCGGTGGTTTGAAGAGCGTCGGAGAACTTGTCCGATATGCCGGTACTCAATGGAAGGAGCAGGGCAGGGTAATGAAAATGGGACTCAGATTCTCACAGATGAGATGGTGATATGGTTTTCTTCTTTTCACACCTCTGGTTTCTAA

Protein sequence

MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQEPERCLSHGEGSSSSVTNFSFAVQRYQKRESKKRPRPPLPKLYRKNDARIGNSATTCFLTGIDLVVFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCCCVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNENGTQILTDEMVIWFSSFHTSGF

Homology

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BLAST of Moc10g29930 vs. NCBI nr
Match: XP_022145297.1 (E3 ubiquitin-protein ligase SDIR1-like [Momordica charantia])

HSP 1 Score: 290.4 bits (742), Expect = 1.9e-74
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 185 VFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCC 244
           VFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCC
Sbjct: 6   VFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCC 65

Query: 245 CVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNENGTQILT 304
           CVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNENGTQILT
Sbjct: 66  CVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNENGTQILT 125

Query: 305 DEMVIWFSSFHTSGF 320
           DEMVIWFSSFHTSGF
Sbjct: 126 DEMVIWFSSFHTSGF 140

[Close]

BLAST of Moc10g29930 vs. NCBI nr
Match: XP_022145436.1 (SKP1-like protein 1A [Momordica charantia])

HSP 1 Score: 238.8 bits (608), Expect = 6.4e-59
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 60
           MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT
Sbjct: 33  MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 92

Query: 61  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ
Sbjct: 93  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 151

[Close]

BLAST of Moc10g29930 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-55
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 60
           MIEDDCADNGIPLPNV+SKILAKVIEYC KHVDAS+++PR SEEDLKAWDRDFVNVDQAT
Sbjct: 33  MIEDDCADNGIPLPNVTSKILAKVIEYCHKHVDASSADPRVSEEDLKAWDRDFVNVDQAT 92

Query: 61  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           LFDLILAANYLNIK+LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ
Sbjct: 93  LFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 151

[Close]

BLAST of Moc10g29930 vs. NCBI nr
Match: XP_022923340.1 (SKP1-like protein 1A [Cucurbita moschata])

HSP 1 Score: 226.5 bits (576), Expect = 3.3e-55
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 60
           MIEDDCADNGIPLPNV+SKIL KVIEYC KHVDAS+++PR SEEDLKAWDRDFVNVDQAT
Sbjct: 33  MIEDDCADNGIPLPNVTSKILVKVIEYCHKHVDASSADPRVSEEDLKAWDRDFVNVDQAT 92

Query: 61  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           LFDLILAANYLNIK+LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ
Sbjct: 93  LFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 151

[Close]

BLAST of Moc10g29930 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 7.3e-55
Identity = 110/119 (92.44%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 60
           MIEDDCADNGIPLPNV+S ILAKVIEYCRKHVDAS+++PR S++DLKAWDRDFVNVDQAT
Sbjct: 33  MIEDDCADNGIPLPNVTSNILAKVIEYCRKHVDASSADPRLSDDDLKAWDRDFVNVDQAT 92

Query: 61  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           LFDLILAANYLNIK+LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ
Sbjct: 93  LFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 151

[Close]

BLAST of Moc10g29930 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-50
Identity = 99/125 (79.20%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRA------SEEDLKAWDRDFV 60
           M+EDDC DNG+PLPNV+SKILAKVIEYC++HV+A+ S+  A      S++DLKAWD DF+
Sbjct: 32  MVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFM 91

Query: 61  NVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEV 120
            +DQATLF+LILAANYLNIKNLLDLTCQTVADMIKGKTPEEIR TFNIKNDFTPEEEEEV
Sbjct: 92  KIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEV 151

[Close]

BLAST of Moc10g29930 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-49
Identity = 103/134 (76.87%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHV---------------DASNSEPRASEED 60
           MIEDDCADNGIPLPNV+SKIL+KVIEYC KHV                A+ + P  S ED
Sbjct: 36  MIEDDCADNGIPLPNVNSKILSKVIEYCNKHVHAAAAAASKAADDAASAAAAVPPPSGED 95

Query: 61  LKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKND 120
           LK WD DFV VDQATLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKND
Sbjct: 96  LKNWDADFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 155

[Close]

BLAST of Moc10g29930 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.8e-48
Identity = 101/135 (74.81%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDAS-NSEPRA---------------SEE 60
           MIEDDC DNGIPLPNV+SKIL+KVIEYC++HV+A+  SE  A               S+E
Sbjct: 33  MIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDE 92

Query: 61  DLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKN 120
           DLK WD +F+ VDQ TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKN
Sbjct: 93  DLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN 152

[Close]

BLAST of Moc10g29930 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.4e-45
Identity = 97/135 (71.85%), Postives = 106/135 (78.52%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEP----------------RASEE 60
           MIED CAD GIPLPNVS+KIL+KVIEYC KHV+A                     +A E+
Sbjct: 37  MIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEARGGAAAAADGDAPAPAAVEANKAVED 96

Query: 61  DLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKN 120
           +LK +D +FV VDQ+TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKN
Sbjct: 97  ELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN 156

[Close]

BLAST of Moc10g29930 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.9e-42
Identity = 88/120 (73.33%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRK-HVDASNSEPRASEEDLKAWDRDFVNVDQA 60
           M+EDDC  +GIPL NV SKIL KVIEYC+K HVD +N     SEEDL  WD  F++++Q+
Sbjct: 32  MVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEANP---ISEEDLNNWDEKFMDLEQS 91

Query: 61  TLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           T+F+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTPEEEE VR+ENQ
Sbjct: 92  TIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQ 148

[Close]

BLAST of Moc10g29930 vs. ExPASy TrEMBL
Match: A0A6J1CW69 (E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC111014786 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 9.0e-75
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 185 VFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCC 244
           VFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCC
Sbjct: 6   VFFFFYNFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGKALEGEMCC 65

Query: 245 CVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNENGTQILT 304
           CVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNENGTQILT
Sbjct: 66  CVCLSSIEEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAGQGNENGTQILT 125

Query: 305 DEMVIWFSSFHTSGF 320
           DEMVIWFSSFHTSGF
Sbjct: 126 DEMVIWFSSFHTSGF 140

[Close]

BLAST of Moc10g29930 vs. ExPASy TrEMBL
Match: A0A6J1CWB0 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-59
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 60
           MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT
Sbjct: 33  MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 92

Query: 61  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ
Sbjct: 93  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 151

[Close]

BLAST of Moc10g29930 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.5e-56
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 60
           MIEDDCADNGIPLPNV+SKILAKVIEYC KHVDAS+++PR SEEDLKAWDRDFVNVDQAT
Sbjct: 33  MIEDDCADNGIPLPNVTSKILAKVIEYCHKHVDASSADPRVSEEDLKAWDRDFVNVDQAT 92

Query: 61  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           LFDLILAANYLNIK+LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ
Sbjct: 93  LFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 151

[Close]

BLAST of Moc10g29930 vs. ExPASy TrEMBL
Match: A0A6J1EBI5 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-55
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 60
           MIEDDCADNGIPLPNV+SKIL KVIEYC KHVDAS+++PR SEEDLKAWDRDFVNVDQAT
Sbjct: 33  MIEDDCADNGIPLPNVTSKILVKVIEYCHKHVDASSADPRVSEEDLKAWDRDFVNVDQAT 92

Query: 61  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           LFDLILAANYLNIK+LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ
Sbjct: 93  LFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 151

[Close]

BLAST of Moc10g29930 vs. ExPASy TrEMBL
Match: A0A6A4PYU3 (SKP1-like protein OS=Lupinus albus OX=3870 GN=Lal_00026213 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.7e-53
Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRASEEDLKAWDRDFVNVDQAT 60
           MIEDDCADNGIPLPNV+SKILAKVIEYC+KHVDA+ SE + ++EDLKAWD DFV VDQAT
Sbjct: 34  MIEDDCADNGIPLPNVTSKILAKVIEYCKKHVDATTSEEKPNDEDLKAWDADFVKVDQAT 93

Query: 61  LFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           LFDLILAANYLNIK+LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ
Sbjct: 94  LFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 152

[Close]

BLAST of Moc10g29930 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 201.8 bits (512), Expect = 8.1e-52
Identity = 99/125 (79.20%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDASNSEPRA------SEEDLKAWDRDFV 60
           M+EDDC DNG+PLPNV+SKILAKVIEYC++HV+A+ S+  A      S++DLKAWD DF+
Sbjct: 32  MVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFM 91

Query: 61  NVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEV 120
            +DQATLF+LILAANYLNIKNLLDLTCQTVADMIKGKTPEEIR TFNIKNDFTPEEEEEV
Sbjct: 92  KIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEV 151

[Close]

BLAST of Moc10g29930 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-49
Identity = 101/135 (74.81%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDAS-NSEPRA---------------SEE 60
           MIEDDC DNGIPLPNV+SKIL+KVIEYC++HV+A+  SE  A               S+E
Sbjct: 33  MIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDE 92

Query: 61  DLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKN 120
           DLK WD +F+ VDQ TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKN
Sbjct: 93  DLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKN 152

[Close]

BLAST of Moc10g29930 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-43
Identity = 88/120 (73.33%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRK-HVDASNSEPRASEEDLKAWDRDFVNVDQA 60
           M+EDDC  +GIPL NV SKIL KVIEYC+K HVD +N     SEEDL  WD  F++++Q+
Sbjct: 32  MVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEANP---ISEEDLNNWDEKFMDLEQS 91

Query: 61  TLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           T+F+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTPEEEE VR+ENQ
Sbjct: 92  TIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQ 148

[Close]

BLAST of Moc10g29930 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-43
Identity = 87/120 (72.50%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRK-HVDASNSEPRASEEDLKAWDRDFVNVDQA 60
           M+EDDC  +GIPL NV SKIL KVIEYC+K HVD +N     SEEDL  WD  F++++Q+
Sbjct: 32  MVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEANP---ISEEDLNKWDEKFMDLEQS 91

Query: 61  TLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ 120
           T+F+LILAANYLNIK+L DLTCQTVADMIKGKTPEEIR TFNI+NDFTPEEEE VR+ENQ
Sbjct: 92  TIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQ 148

[Close]

BLAST of Moc10g29930 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 166.8 bits (421), Expect = 2.9e-41
Identity = 84/126 (66.67%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 1   MIEDDCADNGIPLPNVSSKILAKVIEYCRKHVDAS-------NSEPRASEEDLKAWDRDF 60
           MIEDDCADNGIPLPNV+  ILAKVIEYC+KHV+A+       +    A  ++LK WD +F
Sbjct: 34  MIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEF 93

Query: 61  VNVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE 120
           V VDQ TLFDLILAANYLNI  LLDLTC+ VAD ++GKTPE++R  FNIKND+TPEEE E
Sbjct: 94  VKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAE 153

The following BLAST results are available for this feature:

BLAST of Moc10g29930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145297.1	1.9e-74	100.00	E3 ubiquitin-protein ligase SDIR1-like [Momordica charantia]	[more]
XP_022145436.1	6.4e-59	100.00	SKP1-like protein 1A [Momordica charantia]	[more]
XP_022965297.1	1.1e-55	94.12	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]
XP_022923340.1	3.3e-55	93.28	SKP1-like protein 1A [Cucurbita moschata]	[more]
XP_038903121.1	7.3e-55	92.44	SKP1-like protein 1A [Benincasa hispida]	[more]

BLAST of Moc10g29930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	1.1e-50	79.20	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q6PL11	2.8e-49	76.87	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q9FHW7	1.8e-48	74.81	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q651E8	1.4e-45	71.85	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	1.9e-42	73.33	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of Moc10g29930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CW69	9.0e-75	100.00	E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1CWB0	3.1e-59	100.00	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1	[more]
A0A6J1HJY3	5.5e-56	94.12	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A6J1EBI5	1.6e-55	93.28	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431062 PE=3 SV=1	[more]
A0A6A4PYU3	5.7e-53	89.92	SKP1-like protein OS=Lupinus albus OX=3870 GN=Lal_00026213 PE=3 SV=1	[more]

BLAST of Moc10g29930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	8.1e-52	79.20	S phase kinase-associated protein 1	[more]
AT5G42190.1	1.3e-49	74.81	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	1.4e-43	73.33	SKP1-like 11	[more]
AT4G34470.1	3.1e-43	72.50	SKP1-like 12	[more]
AT1G20140.1	2.9e-41	66.67	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 244..285 e-value: 1.3E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 244..286 e-value: 4.3E-9 score: 36.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 244..286 score: 12.710573
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..73 e-value: 1.4E-23 score: 94.3
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..122 e-value: 7.1E-58 score: 197.1
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 1..34
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 74..119 e-value: 7.1E-27 score: 93.2
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 212..292 e-value: 4.2E-15 score: 57.2
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 1..32 e-value: 1.6E-13 score: 50.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..124
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..119
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 1..88 e-value: 3.24602E-47 score: 153.131
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 235..289
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..119
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 46..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g29930.1	Moc10g29930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity