Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCCTTAGAGTTGTGTCACTTGGAATTCTTGTGCTGGTGGGTTTGGGCTTAGCTTCGGCCGCCCGAACCCTCCTGGATTATGATCGTCGCTACGGTTATGGTCGTCCCAGCCCACGAGTAGGGTATGATCCCGACCATGGTGATGAATCGTATGATAACATATATGGCGGTCGAGGAAGTGGTTCCAGATATGGGGGTCGAGGAGATCATGGCAGCGGTGGATATGGAGGTGAAGTGGAGCGTGATGTTGGTTATGGTAGAGGATATGGAAGTGGAGGCAGTGAAGGATATGGTCCAGGAGGAGATCGTGGTGGCTATGGCTATGGTAGCAGTGGCAGTGGAATTGGGTCTAATAATGGTGGAGAAGGAGGATATGGTAATAGTGGCAAAGGAAGTGGAGATGAGAGTGGATATGATGGGGGATATGCAGTTAAAAATACCGTTGCAAAGGACAATGCAAGCCCTTGA
mRNA sequence
ATGGCTACCCTTAGAGTTGTGTCACTTGGAATTCTTGTGCTGGTGGGTTTGGGCTTAGCTTCGGCCGCCCGAACCCTCCTGGATTATGATCGTCGCTACGGTTATGGTCGTCCCAGCCCACGAGTAGGGTATGATCCCGACCATGGTGATGAATCGTATGATAACATATATGGCGGTCGAGGAAGTGGTTCCAGATATGGGGGTCGAGGAGATCATGGCAGCGGTGGATATGGAGGTGAAGTGGAGCGTGATGTTGGTTATGGTAGAGGATATGGAAGTGGAGGCAGTGAAGGATATGGTCCAGGAGGAGATCGTGGTGGCTATGGCTATGGTAGCAGTGGCAGTGGAATTGGGTCTAATAATGGTGGAGAAGGAGGATATGGTAATAGTGGCAAAGGAAGTGGAGATGAGAGTGGATATGATGGGGGATATGCAGTTAAAAATACCGTTGCAAAGGACAATGCAAGCCCTTGA
Coding sequence (CDS)
ATGGCTACCCTTAGAGTTGTGTCACTTGGAATTCTTGTGCTGGTGGGTTTGGGCTTAGCTTCGGCCGCCCGAACCCTCCTGGATTATGATCGTCGCTACGGTTATGGTCGTCCCAGCCCACGAGTAGGGTATGATCCCGACCATGGTGATGAATCGTATGATAACATATATGGCGGTCGAGGAAGTGGTTCCAGATATGGGGGTCGAGGAGATCATGGCAGCGGTGGATATGGAGGTGAAGTGGAGCGTGATGTTGGTTATGGTAGAGGATATGGAAGTGGAGGCAGTGAAGGATATGGTCCAGGAGGAGATCGTGGTGGCTATGGCTATGGTAGCAGTGGCAGTGGAATTGGGTCTAATAATGGTGGAGAAGGAGGATATGGTAATAGTGGCAAAGGAAGTGGAGATGAGAGTGGATATGATGGGGGATATGCAGTTAAAAATACCGTTGCAAAGGACAATGCAAGCCCTTGA
Protein sequence
MATLRVVSLGILVLVGLGLASAARTLLDYDRRYGYGRPSPRVGYDPDHGDESYDNIYGGRGSGSRYGGRGDHGSGGYGGEVERDVGYGRGYGSGGSEGYGPGGDRGGYGYGSSGSGIGSNNGGEGGYGNSGKGSGDESGYDGGYAVKNTVAKDNASP
Homology
BLAST of Moc10g28840 vs. NCBI nr
Match:
XP_008449165.1 (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KAA0053039.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa] >TYK11494.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa])
HSP 1 Score: 111.7 bits (278), Expect = 5.8e-21
Identity = 107/223 (47.98%), Postives = 115/223 (51.57%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYD---RRYGYGRPSPRVGYDPDHGDESYDNIY 60
MA LR + L L+ VGLGLASA RTLLDYD R YGY RPSPRVGYDP H DESYDN Y
Sbjct: 1 MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60
Query: 61 GG---RGSG---SRYGGRGDHGSG----GYGGEVE-RDVGYGRGYGSGGSEGYGPG---- 120
GG RG G S GG G G G GYG + R VGYG G G GG G+G G
Sbjct: 61 GGSSSRGHGIGDSALGGSGYEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGNN 120
Query: 121 -----GDR-----GGYGYGSSG--------------------------------SGIGSN 155
GDR GG GYGS G SG GS
Sbjct: 121 GGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYGSG 180
BLAST of Moc10g28840 vs. NCBI nr
Match:
KAE8650024.1 (hypothetical protein Csa_011560 [Cucumis sativus])
HSP 1 Score: 105.5 bits (262), Expect = 4.2e-19
Identity = 100/223 (44.84%), Postives = 109/223 (48.88%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYDRR---YGYGRPSPRVGYDPDHGDESYDNIY 60
MA LR + L L+ V LGLASA RTLLDYD R YGY RPSPRVGYDP HGDESYD Y
Sbjct: 16 MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 75
Query: 61 GGR-------------GSGSRYGGRGDH-----------GSGGYGGEVERDVGYGRGYGS 120
GG GSG GGR D+ G G YGG G+G GYG+
Sbjct: 76 GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYGN 135
Query: 121 GGSEGYGP--GGDRGGYGYGSSG-------------------------------SGIGSN 155
G YG G GG GYGS G SG GS
Sbjct: 136 NGGGSYGDRYGPSLGGSGYGSGGKGSGNGYDDHSRGNGARDNSYGDSHGHGGRDSGYGSG 195
BLAST of Moc10g28840 vs. NCBI nr
Match:
XP_011652712.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus])
HSP 1 Score: 105.5 bits (262), Expect = 4.2e-19
Identity = 100/223 (44.84%), Postives = 109/223 (48.88%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYDRR---YGYGRPSPRVGYDPDHGDESYDNIY 60
MA LR + L L+ V LGLASA RTLLDYD R YGY RPSPRVGYDP HGDESYD Y
Sbjct: 1 MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60
Query: 61 GGR-------------GSGSRYGGRGDH-----------GSGGYGGEVERDVGYGRGYGS 120
GG GSG GGR D+ G G YGG G+G GYG+
Sbjct: 61 GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYGN 120
Query: 121 GGSEGYGP--GGDRGGYGYGSSG-------------------------------SGIGSN 155
G YG G GG GYGS G SG GS
Sbjct: 121 NGGGSYGDRYGPSLGGSGYGSGGKGSGNGYDDHSRGNGARDNSYGDSHGHGGRDSGYGSG 180
BLAST of Moc10g28840 vs. NCBI nr
Match:
KAA0053038.1 (glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo var. makuwa] >TYK11493.1 glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18
Identity = 103/243 (42.39%), Postives = 114/243 (46.91%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYD---RRYGYGRPSPRVGYDPDHGDESYDNIY 60
MA R + L L+LVGLGLASAARTLLDYD R YGY RP+PRVGYDP H DESYDN+Y
Sbjct: 1 MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60
Query: 61 GGR------------------------------------GSGSRYGGRGDHG-------- 120
GG G+G YG G HG
Sbjct: 61 GGSSSKGHGIGDSALGGSEHEGGRHYQYGGRNDDHGVGYGNGGGYGSVGGHGDGYGNNGG 120
Query: 121 ----------SGGYGGEVERDVGYGR-------------GYGSGGSEGYGP--GGDRGGY 155
GGYG GYG GYG+ G GYG G GG
Sbjct: 121 GGHGDGYGNNGGGYGSVGGHGDGYGNNGGGYGSVGGHGDGYGNNGGGGYGDRYGPSLGGS 180
BLAST of Moc10g28840 vs. NCBI nr
Match:
XP_008448676.1 (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo] >XP_008448677.1 PREDICTED: glycine-rich cell wall structural protein 2-like isoform X2 [Cucumis melo])
HSP 1 Score: 95.1 bits (235), Expect = 5.6e-16
Identity = 88/163 (53.99%), Postives = 99/163 (60.74%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYD---RRYGYGRPSPRVGYDPDHGDESYDNIY 60
MA R + L L+LVGLGLASAARTLLDYD R YGY RP+PRVGYDP H DESYDN+Y
Sbjct: 1 MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60
Query: 61 GGRGSGSRYGGRGDHGSGG----------YGG-EVERDVGYGR--GYGS--GGSEGYGPG 120
G GS S+ G GD GG YGG + VGYG GYGS G +GYG
Sbjct: 61 G--GSSSKGHGIGDSALGGSEHEGGRHYQYGGRNDDHGVGYGNGGGYGSVGGHGDGYGNN 120
Query: 121 GDRG-GYGYGSSGSGIGSNNGGEGGYGNSGKGSGDESGYDGGY 145
G G G GYG++G G GS G GYGN+G G G G+ GY
Sbjct: 121 GGGGHGDGYGNNGGGYGSVGGHGDGYGNNGGGYGSVGGHGDGY 161
BLAST of Moc10g28840 vs. ExPASy Swiss-Prot
Match:
P0C5C7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=GRP0.9 PE=2 SV=1)
HSP 1 Score: 48.5 bits (114), Expect = 7.9e-05
Identity = 69/146 (47.26%), Postives = 80/146 (54.79%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYDRRYGYGRPSPRVGYDPDHGDESYDNIYGGR 60
MAT + ++L ILVL+ +G+ ++ARTLL GYG P G G E YGG
Sbjct: 1 MATTKHLALAILVLLSIGMTTSARTLL------GYG---PGGGGGGGGGGEGGGGGYGGS 60
Query: 61 --GSGSRYGGRGDHGSGGYGGEVERDVGYGRGYGSGGSEGYGPGGDRGGYGYGSSGSGIG 120
GSGS YG G GSGG G GYGRG G GG G G GG GYG G GSG G
Sbjct: 61 GYGSGSGYGEGG--GSGGAAGG-----GYGRGGGGGGGGGEG-GGSGSGYGSG-QGSGYG 120
Query: 121 SNNGGEGGYGNSGKGSGDESGYDGGY 145
+ GG GGYG+ G G G + G GGY
Sbjct: 121 AGVGGAGGYGSGGGGGGGQGGGAGGY 128
BLAST of Moc10g28840 vs. ExPASy Swiss-Prot
Match:
A3C5A7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRP0.9 PE=2 SV=1)
HSP 1 Score: 48.5 bits (114), Expect = 7.9e-05
Identity = 69/146 (47.26%), Postives = 80/146 (54.79%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYDRRYGYGRPSPRVGYDPDHGDESYDNIYGGR 60
MAT + ++L ILVL+ +G+ ++ARTLL GYG P G G E YGG
Sbjct: 1 MATTKHLALAILVLLSIGMTTSARTLL------GYG---PGGGGGGGGGGEGGGGGYGGS 60
Query: 61 --GSGSRYGGRGDHGSGGYGGEVERDVGYGRGYGSGGSEGYGPGGDRGGYGYGSSGSGIG 120
GSGS YG G GSGG G GYGRG G GG G G GG GYG G GSG G
Sbjct: 61 GYGSGSGYGEGG--GSGGAAGG-----GYGRGGGGGGGGGEG-GGSGSGYGSG-QGSGYG 120
Query: 121 SNNGGEGGYGNSGKGSGDESGYDGGY 145
+ GG GGYG+ G G G + G GGY
Sbjct: 121 AGVGGAGGYGSGGGGGGGQGGGAGGY 128
BLAST of Moc10g28840 vs. ExPASy TrEMBL
Match:
A0A5A7UHU2 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001580 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 107/223 (47.98%), Postives = 115/223 (51.57%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYD---RRYGYGRPSPRVGYDPDHGDESYDNIY 60
MA LR + L L+ VGLGLASA RTLLDYD R YGY RPSPRVGYDP H DESYDN Y
Sbjct: 1 MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60
Query: 61 GG---RGSG---SRYGGRGDHGSG----GYGGEVE-RDVGYGRGYGSGGSEGYGPG---- 120
GG RG G S GG G G G GYG + R VGYG G G GG G+G G
Sbjct: 61 GGSSSRGHGIGDSALGGSGYEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGNN 120
Query: 121 -----GDR-----GGYGYGSSG--------------------------------SGIGSN 155
GDR GG GYGS G SG GS
Sbjct: 121 GGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYGSG 180
BLAST of Moc10g28840 vs. ExPASy TrEMBL
Match:
A0A1S3BMC4 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103491115 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 107/223 (47.98%), Postives = 115/223 (51.57%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYD---RRYGYGRPSPRVGYDPDHGDESYDNIY 60
MA LR + L L+ VGLGLASA RTLLDYD R YGY RPSPRVGYDP H DESYDN Y
Sbjct: 1 MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60
Query: 61 GG---RGSG---SRYGGRGDHGSG----GYGGEVE-RDVGYGRGYGSGGSEGYGPG---- 120
GG RG G S GG G G G GYG + R VGYG G G GG G+G G
Sbjct: 61 GGSSSRGHGIGDSALGGSGYEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGNN 120
Query: 121 -----GDR-----GGYGYGSSG--------------------------------SGIGSN 155
GDR GG GYGS G SG GS
Sbjct: 121 GGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYGSG 180
BLAST of Moc10g28840 vs. ExPASy TrEMBL
Match:
A0A0A0L1V3 (Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 100/223 (44.84%), Postives = 109/223 (48.88%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYDRR---YGYGRPSPRVGYDPDHGDESYDNIY 60
MA LR + L L+ V LGLASA RTLLDYD R YGY RPSPRVGYDP HGDESYD Y
Sbjct: 1 MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60
Query: 61 GGR-------------GSGSRYGGRGDH-----------GSGGYGGEVERDVGYGRGYGS 120
GG GSG GGR D+ G G YGG G+G GYG+
Sbjct: 61 GGSSSRGHGIGDSALGGSGYEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYGN 120
Query: 121 GGSEGYGP--GGDRGGYGYGSSG-------------------------------SGIGSN 155
G YG G GG GYGS G SG GS
Sbjct: 121 NGGGSYGDRYGPSLGGSGYGSGGKGSGNGYDDHSRGNGARDNSYGDSHGHGGRDSGYGSG 180
BLAST of Moc10g28840 vs. ExPASy TrEMBL
Match:
A0A5A7UCW7 (Glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001570 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18
Identity = 103/243 (42.39%), Postives = 114/243 (46.91%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYD---RRYGYGRPSPRVGYDPDHGDESYDNIY 60
MA R + L L+LVGLGLASAARTLLDYD R YGY RP+PRVGYDP H DESYDN+Y
Sbjct: 1 MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60
Query: 61 GGR------------------------------------GSGSRYGGRGDHG-------- 120
GG G+G YG G HG
Sbjct: 61 GGSSSKGHGIGDSALGGSEHEGGRHYQYGGRNDDHGVGYGNGGGYGSVGGHGDGYGNNGG 120
Query: 121 ----------SGGYGGEVERDVGYGR-------------GYGSGGSEGYGP--GGDRGGY 155
GGYG GYG GYG+ G GYG G GG
Sbjct: 121 GGHGDGYGNNGGGYGSVGGHGDGYGNNGGGYGSVGGHGDGYGNNGGGGYGDRYGPSLGGS 180
BLAST of Moc10g28840 vs. ExPASy TrEMBL
Match:
A0A1S3BL53 (glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490776 PE=4 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 88/163 (53.99%), Postives = 99/163 (60.74%), Query Frame = 0
Query: 1 MATLRVVSLGILVLVGLGLASAARTLLDYD---RRYGYGRPSPRVGYDPDHGDESYDNIY 60
MA R + L L+LVGLGLASAARTLLDYD R YGY RP+PRVGYDP H DESYDN+Y
Sbjct: 1 MAVHRGLYLSFLLLVGLGLASAARTLLDYDPRTRYYGYDRPTPRVGYDPSHRDESYDNVY 60
Query: 61 GGRGSGSRYGGRGDHGSGG----------YGG-EVERDVGYGR--GYGS--GGSEGYGPG 120
G GS S+ G GD GG YGG + VGYG GYGS G +GYG
Sbjct: 61 G--GSSSKGHGIGDSALGGSEHEGGRHYQYGGRNDDHGVGYGNGGGYGSVGGHGDGYGNN 120
Query: 121 GDRG-GYGYGSSGSGIGSNNGGEGGYGNSGKGSGDESGYDGGY 145
G G G GYG++G G GS G GYGN+G G G G+ GY
Sbjct: 121 GGGGHGDGYGNNGGGYGSVGGHGDGYGNNGGGYGSVGGHGDGY 161
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008449165.1 | 5.8e-21 | 47.98 | PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KA... | [more] |
KAE8650024.1 | 4.2e-19 | 44.84 | hypothetical protein Csa_011560 [Cucumis sativus] | [more] |
XP_011652712.1 | 4.2e-19 | 44.84 | glycine-rich cell wall structural protein 2 [Cucumis sativus] | [more] |
KAA0053038.1 | 2.1e-18 | 42.39 | glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis melo var. m... | [more] |
XP_008448676.1 | 5.6e-16 | 53.99 | PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Cucumis ... | [more] |
Match Name | E-value | Identity | Description | |
P0C5C7 | 7.9e-05 | 47.26 | Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=399... | [more] |
A3C5A7 | 7.9e-05 | 47.26 | Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=3... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UHU2 | 2.8e-21 | 47.98 | Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O... | [more] |
A0A1S3BMC4 | 2.8e-21 | 47.98 | glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO... | [more] |
A0A0A0L1V3 | 2.0e-19 | 44.84 | Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1 | [more] |
A0A5A7UCW7 | 1.0e-18 | 42.39 | Glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo var.... | [more] |
A0A1S3BL53 | 2.7e-16 | 53.99 | glycine-rich cell wall structural protein 2-like isoform X1 OS=Cucumis melo OX=3... | [more] |
Match Name | E-value | Identity | Description | |