Moc10g28760 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g28760
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr10: 21643753 .. 21644085 (-)
RNA-Seq ExpressionMoc10g28760
SyntenyMoc10g28760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTGAACTGCCTCTCGTGCCAGCTGCTGCAGAGATCGGACTCGGAGAGAGAACAGAGATGTTACTCCGACGGCTTATCCTCGTCGGAGCGCAGCTGGTCCGGCAACCTCTCCCTCAGGCCGCCCTGCGAGGACCGCCCCGGTGTTCCGCTTCCGACGGCGGCCGCCAAGGGACACCGCCGCCTCCACACCACCGGCGCCGTCTCCTTCGGCAAGGAGCCCAGGCTCGTCAGAAGCTCCGGCATGAGGAGGGATTGGAGCTTCGAGGATCTTAGATCCATCGCTCAACAGCGAACCCAAAACCAACCCCAACCCTCCGCCAATTCCTGA

mRNA sequence

ATGAGTCTGAACTGCCTCTCGTGCCAGCTGCTGCAGAGATCGGACTCGGAGAGAGAACAGAGATGTTACTCCGACGGCTTATCCTCGTCGGAGCGCAGCTGGTCCGGCAACCTCTCCCTCAGGCCGCCCTGCGAGGACCGCCCCGGTGTTCCGCTTCCGACGGCGGCCGCCAAGGGACACCGCCGCCTCCACACCACCGGCGCCGTCTCCTTCGGCAAGGAGCCCAGGCTCGTCAGAAGCTCCGGCATGAGGAGGGATTGGAGCTTCGAGGATCTTAGATCCATCGCTCAACAGCGAACCCAAAACCAACCCCAACCCTCCGCCAATTCCTGA

Coding sequence (CDS)

ATGAGTCTGAACTGCCTCTCGTGCCAGCTGCTGCAGAGATCGGACTCGGAGAGAGAACAGAGATGTTACTCCGACGGCTTATCCTCGTCGGAGCGCAGCTGGTCCGGCAACCTCTCCCTCAGGCCGCCCTGCGAGGACCGCCCCGGTGTTCCGCTTCCGACGGCGGCCGCCAAGGGACACCGCCGCCTCCACACCACCGGCGCCGTCTCCTTCGGCAAGGAGCCCAGGCTCGTCAGAAGCTCCGGCATGAGGAGGGATTGGAGCTTCGAGGATCTTAGATCCATCGCTCAACAGCGAACCCAAAACCAACCCCAACCCTCCGCCAATTCCTGA

Protein sequence

MSLNCLSCQLLQRSDSEREQRCYSDGLSSSERSWSGNLSLRPPCEDRPGVPLPTAAAKGHRRLHTTGAVSFGKEPRLVRSSGMRRDWSFEDLRSIAQQRTQNQPQPSANS
Homology
BLAST of Moc10g28760 vs. NCBI nr
Match: XP_023539506.1 (uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-21
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 0

Query: 1   MSLNCLSCQL-LQRSDSER---EQRCYSDGLSSSERSWSGNLSLRPPC-EDRPGVPLPT- 60
           MSLNCLSCQL LQRSDS++   +   ++D   S +RSWSGNLS RPP  ++  G  + T 
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  --AAAKGHRRLHTTGAVSF---GKEPRLVRSSGMRRDWSFEDLRSIAQQR 100
              A  GHRRLH+TGAV+F   GKEPRL+RS+GMRRDWSFEDLR+I +++
Sbjct: 61  NKVAPTGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEK 110

BLAST of Moc10g28760 vs. NCBI nr
Match: XP_022952265.1 (uncharacterized protein LOC111454968 [Cucurbita moschata] >KAG6596735.1 hypothetical protein SDJN03_09915, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028271.1 hypothetical protein SDJN02_09452, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-21
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 1   MSLNCLSCQL-LQRSDSER---EQRCYSDGLSSSERSWSGNLSLRPPC-EDRPGVPLPT- 60
           MSLNCLSCQL LQRSDS++   +   ++D   S +RSWSGNLS RPP  ++  G  + T 
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  --AAAKGHRRLHTTGAVSF---GKEPRLVRSSGMRRDWSFEDLRSIAQQR 100
              A  GHRRLH+TGAV+F   GKEPRL+RS+GMRRDWSFEDLR+I + +
Sbjct: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDK 110

BLAST of Moc10g28760 vs. NCBI nr
Match: XP_023007608.1 (uncharacterized protein LOC111500186 [Cucurbita maxima])

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-21
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MSLNCLSCQLLQRSDSERE-----QRCYSDGLSSSERSWSGNLSLRPPCEDRP------G 60
           M+LNCLSCQLLQR+DSER+     Q  YS  +  S RSWSGNLS RPP  DRP       
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPP--DRPKKEALRA 60

Query: 61  VPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQR 100
           +P   A     RRLH++G +S G KEP+LVRSSGMRRDWSFEDLR+I +++
Sbjct: 61  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

BLAST of Moc10g28760 vs. NCBI nr
Match: KAG6577703.1 (hypothetical protein SDJN03_25277, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015746.1 hypothetical protein SDJN02_23384, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 9.1e-21
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MSLNCLSCQLLQRSDSERE-----QRCYSDGLSSSERSWSGNLSLRPPCEDRP------G 60
           M+LNCLSCQLLQR+DSER+     Q  YS  +  S RSWSGNLS RPP  DRP       
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEPSGRSWSGNLSFRPP--DRPKKEPLRA 60

Query: 61  VPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQR 100
           +P   A     RRLH++G +S G KEP+LVRSSGMRRDWSFEDLR+I +++
Sbjct: 61  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

BLAST of Moc10g28760 vs. NCBI nr
Match: XP_023553065.1 (uncharacterized protein LOC111810575 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 9.1e-21
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MSLNCLSCQLLQRSDSERE-----QRCYSDGLSSSERSWSGNLSLRPPCEDRP------G 60
           M+LNCLSCQLLQR+DSER+     Q  YS  +  S RSWSGNLS RPP  DRP       
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQLQNYYSVQIEPSGRSWSGNLSFRPP--DRPKKEPLRA 60

Query: 61  VPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQR 100
           +P   A     RRLH++G +S G KEP+LVRSSGMRRDWSFEDLR+I +++
Sbjct: 61  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

BLAST of Moc10g28760 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 1   MSLNCLSCQL-LQRSDSER---EQRCYSDGLSSSERSWSGNLSLRPPC-EDRPGVPLPT- 60
           MSLNCLSCQL LQRSDS++   +   ++D   S +RSWSGNLS RPP  ++  G  + T 
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLEQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRTE 60

Query: 61  --AAAKGHRRLHTTGAVSF---GKEPRLVRSSGMRRDWSFEDLRSIAQQR 100
              A  GHRRLH+TGAV+F   GKEPRL+RS+GMRRDWSFEDLR+I + +
Sbjct: 61  NKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDK 110

BLAST of Moc10g28760 vs. ExPASy TrEMBL
Match: A0A6J1L834 (uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 1   MSLNCLSCQLLQRSDSERE-----QRCYSDGLSSSERSWSGNLSLRPPCEDRP------G 60
           M+LNCLSCQLLQR+DSER+     Q  YS  +  S RSWSGNLS RPP  DRP       
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPP--DRPKKEALRA 60

Query: 61  VPLPTAAAKGHRRLHTTGAVSFG-KEPRLVRSSGMRRDWSFEDLRSIAQQR 100
           +P   A     RRLH++G +S G KEP+LVRSSGMRRDWSFEDLR+I +++
Sbjct: 61  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

BLAST of Moc10g28760 vs. ExPASy TrEMBL
Match: A0A0A0L198 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-18
Identity = 70/125 (56.00%), Postives = 79/125 (63.20%), Query Frame = 0

Query: 1   MSLNCLSCQLLQRSDSERE-----QRCY-SDGLSSSERSWSGNLSLRP--------PCED 60
           MSLNCLSCQ+LQR+DSER      Q  Y SD  +SSERSWSGNL LRP            
Sbjct: 1   MSLNCLSCQILQRTDSERHRDRQVQTYYTSDEFNSSERSWSGNLCLRPNRGGGGGGGGRG 60

Query: 61  RPGVPLPTAAAKGHRRLHTTGAVSF-GKEPRLVRSSGMRRDWSFEDLRSIAQQRTQNQPQ 111
             G+     A  GHRR     AVSF GKEPRL+RSSGMRRDWSFEDLR+I +++     Q
Sbjct: 61  FRGMADNKVAPIGHRR-----AVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEK-----Q 115

BLAST of Moc10g28760 vs. ExPASy TrEMBL
Match: A0A5A7UAS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001620 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 71/121 (58.68%), Postives = 80/121 (66.12%), Query Frame = 0

Query: 1   MSLNCLSCQLLQRSDSERE-----QRCY-SDGLSSSERSWSGNLSLRPPCEDRPGVPLPT 60
           MSLNCLSCQLLQR+DSER      Q  Y SD    S+RSWSGNLSLR   ++R GV    
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSLR---QNRGGVFRGM 60

Query: 61  A----AAKGHRRLHTTGAVSF-GKEPRLVRSSGMRRDWSFEDLRSIAQQRTQNQPQPSAN 111
           A    A   HRR     AVSF GKEPRLVRSSGMRRDWSFEDLR+I +++     +PS N
Sbjct: 61  ADNKVAPVCHRR-----AVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEK-----EPSPN 108

BLAST of Moc10g28760 vs. ExPASy TrEMBL
Match: A0A1S3BJN6 (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 71/121 (58.68%), Postives = 80/121 (66.12%), Query Frame = 0

Query: 1   MSLNCLSCQLLQRSDSERE-----QRCY-SDGLSSSERSWSGNLSLRPPCEDRPGVPLPT 60
           MSLNCLSCQLLQR+DSER      Q  Y SD    S+RSWSGNLSLR   ++R GV    
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSLR---QNRGGVFRGM 60

Query: 61  A----AAKGHRRLHTTGAVSF-GKEPRLVRSSGMRRDWSFEDLRSIAQQRTQNQPQPSAN 111
           A    A   HRR     AVSF GKEPRLVRSSGMRRDWSFEDLR+I +++     +PS N
Sbjct: 61  ADNKVAPVCHRR-----AVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEK-----EPSPN 108

BLAST of Moc10g28760 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 0

Query: 1  MSLNCLSCQLLQRSDSEREQRCYSDGLSSSERSWSGNLSLRPPCEDRPGVPLPTAAAKGH 60
          MSLNCL+C +LQR+DS+R+     D   SS +      +      +R  +P+     KGH
Sbjct: 1  MSLNCLACHILQRTDSDRDMGSRKD---SSFKENFATSAFEKMVRNRSSLPVVRRVNKGH 60

Query: 61 RRLHTTGAVSFGK--EPRLVRSSGMRRDWSFEDLRSIAQQ 99
          RRL++   + +G+  EP+LVRSSG+RRDWSFEDL+    Q
Sbjct: 61 RRLYSADIMVYGELDEPKLVRSSGIRRDWSFEDLKKHKDQ 97

BLAST of Moc10g28760 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.5e-08
Identity = 45/120 (37.50%), Postives = 59/120 (49.17%), Query Frame = 0

Query: 1   MSLNCLSCQLLQRSDSEREQRCYSDGLSSSE----------------RSWSGNLSLRPPC 60
           MSLNCLSCQ L R+DS ++      G    E                R+WSGNLS R   
Sbjct: 1   MSLNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYE 60

Query: 61  E-DRPGVPLPTAAAKGHRRLHT--TGAVSFG--------KEPRLVRSSGMRRDWSFEDLR 94
           +  RPG  L     K  +  H   +G V           ++P+LVRS+G+RR+WSFE+LR
Sbjct: 61  KIGRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENLR 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023539506.11.8e-2158.18uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo][more]
XP_022952265.13.1e-2158.18uncharacterized protein LOC111454968 [Cucurbita moschata] >KAG6596735.1 hypothet... [more]
XP_023007608.15.3e-2157.66uncharacterized protein LOC111500186 [Cucurbita maxima][more]
KAG6577703.19.1e-2157.66hypothetical protein SDJN03_25277, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023553065.19.1e-2157.66uncharacterized protein LOC111810575 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GL991.5e-2158.18uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC1114549... [more]
A0A6J1L8342.6e-2157.66uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186... [more]
A0A0A0L1982.7e-1856.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1[more]
A0A5A7UAS31.0e-1758.68Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BJN61.0e-1758.68uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=... [more]
Match NameE-valueIdentityDescription
AT2G35215.11.0e-1443.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G46770.12.5e-0837.50unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..110
NoneNo IPR availablePANTHERPTHR36019:SF3PLANT/PROTEINcoord: 1..100
NoneNo IPR availablePANTHERPTHR36019PLANT/PROTEINcoord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g28760.1Moc10g28760.1mRNA