Moc10g28640 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g28640
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	cinnamoyl-CoA reductase-like SNL6
Location	chr10: 21514001 .. 21514612 (+)
RNA-Seq Expression	Moc10g28640
Synteny	Moc10g28640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGAGTAGCTACAGATGGTTCAGGGCGAGACTTTAGAGGACCAACAACAATGATGGCCAGAACAGATCAGAAGAATCTGCCATTAGCTCAAGTTAAACAGTTGAGAAGTACAGAAAAGGGAAACGAGAATTCGATAGGCCATCGAGTTCATACCTCAGCTGTTAGACGTTCAAGCGAGTTGGTGAAGTCGCATAGGCGAATTAGTGCATTGGAGGGTACAGGTTCTGTTTCTAGTGTGGCGACAGACTTGGATGGGAGCACCAAGTCATTAGGGGAATCTTCCTTCAGAGGTTGTTGGGTTCGTTCGAGAAAGGAAGCGATGGGGACCACTTAGATGAAGTGGGAGTACGTGGCTATGTCTCTAAGTCTGGGGGACAAGACCACGTAGAGCTGCCCAGTCTCGGGGCAGAGTCAGACGATGTTTGGGTAGGGCCAAACAGTGTTGATCAGTTCGTTGATAGAGGAGTCAGAACTGTGTCTTGACAGAGGGTGTCAAGAAGTTGATGGGGCACTGTTGATGCAGTGGGAGGCAGAGAATTGTCGTTTTGTTTCCAATTGGGAGATTGTTGGGATTATGAAGCCAAAACAGAAAACCCATATCCTATGA

mRNA sequence

ATGCACAGAGTAGCTACAGATGGTTCAGGGCGAGACTTTAGAGGACCAACAACAATGATGGCCAGAACAGATCAGAAGAATCTGCCATTAGCTCAAGTTAAACAGTTGAGAAGTACAGAAAAGGGAAACGAGAATTCGATAGGCCATCGAGTTCATACCTCAGCTGTTAGACGTTCAAGCGAGTTGGTGAAGTCGCATAGGCGAATTAGTGCATTGGAGGGTACAGGTTCTGTTTCTAGTGTGGCGACAGACTTGGATGGGAGCACCAAGTCATTAGGGGAATCTTCCTTCAGAGTGTTGATCAGTTCGTTGATAGAGGAGTCAGAACTGTGTCTTGACAGAGGGTGTCAAGAAGTTGATGGGGCACTGTTGATGCAGTGGGAGGCAGAGAATTGTCGTTTTGTTTCCAATTGGGAGATTGTTGGGATTATGAAGCCAAAACAGAAAACCCATATCCTATGA

Coding sequence (CDS)

ATGCACAGAGTAGCTACAGATGGTTCAGGGCGAGACTTTAGAGGACCAACAACAATGATGGCCAGAACAGATCAGAAGAATCTGCCATTAGCTCAAGTTAAACAGTTGAGAAGTACAGAAAAGGGAAACGAGAATTCGATAGGCCATCGAGTTCATACCTCAGCTGTTAGACGTTCAAGCGAGTTGGTGAAGTCGCATAGGCGAATTAGTGCATTGGAGGGTACAGGTTCTGTTTCTAGTGTGGCGACAGACTTGGATGGGAGCACCAAGTCATTAGGGGAATCTTCCTTCAGAGTGTTGATCAGTTCGTTGATAGAGGAGTCAGAACTGTGTCTTGACAGAGGGTGTCAAGAAGTTGATGGGGCACTGTTGATGCAGTGGGAGGCAGAGAATTGTCGTTTTGTTTCCAATTGGGAGATTGTTGGGATTATGAAGCCAAAACAGAAAACCCATATCCTATGA

Protein sequence

MHRVATDGSGRDFRGPTTMMARTDQKNLPLAQVKQLRSTEKGNENSIGHRVHTSAVRRSSELVKSHRRISALEGTGSVSSVATDLDGSTKSLGESSFRVLISSLIEESELCLDRGCQEVDGALLMQWEAENCRFVSNWEIVGIMKPKQKTHIL

Homology

[Close]

BLAST of Moc10g28640 vs. NCBI nr
Match: XP_022157059.1 (uncharacterized protein LOC111023870 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 4.5e-34
Identity = 81/98 (82.65%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   MHRVATDGSGRDFRGPTTMMARTDQKNLPLAQVKQLRSTEKGNENSIGHRVHTSAVRRSS 60
           MHRVATD SGRD +GPTT+MARTDQKNLP A VKQLRSTEKGNEN IGH+VHTSAVRRS 
Sbjct: 59  MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG 118

Query: 61  ELVKSHRRISALEGTGSVSSVATDLDGSTKSLGESSFR 99
           ELVKSHRRISA +GTG VSSV TDL GS KS GESSF+
Sbjct: 119 ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFK 156

[Close]

BLAST of Moc10g28640 vs. NCBI nr
Match: XP_022152155.1 (cinnamoyl-CoA reductase-like SNL6 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-27
Identity = 73/98 (74.49%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 1   MHRVATDGSGRDFRGPTTMMARTDQKNLPLAQVKQLRSTEKGNENSIGHRVHTSAVRRSS 60
           MH+V   GS R  R P  +MA+TDQKNLP  QVKQLRST+KGNEN IGHRVHTSAVR   
Sbjct: 28  MHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVKQLRSTKKGNENLIGHRVHTSAVRCLG 87

Query: 61  ELVKSHRRISALEGTGSVSSVATDLDGSTKSLGESSFR 99
           ELVKSHRRISAL+GTGS+SSVAT L GS KS GESSFR
Sbjct: 88  ELVKSHRRISALKGTGSISSVATYLSGSAKSSGESSFR 125

[Close]

BLAST of Moc10g28640 vs. ExPASy TrEMBL
Match: A0A6J1DVE9 (uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023870 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.2e-34
Identity = 81/98 (82.65%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1   MHRVATDGSGRDFRGPTTMMARTDQKNLPLAQVKQLRSTEKGNENSIGHRVHTSAVRRSS 60
           MHRVATD SGRD +GPTT+MARTDQKNLP A VKQLRSTEKGNEN IGH+VHTSAVRRS 
Sbjct: 59  MHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNENLIGHQVHTSAVRRSG 118

Query: 61  ELVKSHRRISALEGTGSVSSVATDLDGSTKSLGESSFR 99
           ELVKSHRRISA +GTG VSSV TDL GS KS GESSF+
Sbjct: 119 ELVKSHRRISAFKGTGFVSSVVTDLGGSAKSSGESSFK 156

[Close]

BLAST of Moc10g28640 vs. ExPASy TrEMBL
Match: A0A6J1DD48 (cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.7e-28
Identity = 73/98 (74.49%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 1   MHRVATDGSGRDFRGPTTMMARTDQKNLPLAQVKQLRSTEKGNENSIGHRVHTSAVRRSS 60
           MH+V   GS R  R P  +MA+TDQKNLP  QVKQLRST+KGNEN IGHRVHTSAVR   
Sbjct: 28  MHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVKQLRSTKKGNENLIGHRVHTSAVRCLG 87

Query: 61  ELVKSHRRISALEGTGSVSSVATDLDGSTKSLGESSFR 99
           ELVKSHRRISAL+GTGS+SSVAT L GS KS GESSFR
Sbjct: 88  ELVKSHRRISALKGTGSISSVATYLSGSAKSSGESSFR 125

The following BLAST results are available for this feature:

BLAST of Moc10g28640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157059.1	4.5e-34	82.65	uncharacterized protein LOC111023870 [Momordica charantia]	[more]
XP_022152155.1	1.4e-27	74.49	cinnamoyl-CoA reductase-like SNL6 [Momordica charantia]	[more]

BLAST of Moc10g28640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g28640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVE9	2.2e-34	82.65	uncharacterized protein LOC111023870 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DD48	6.7e-28	74.49	cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944...	[more]

BLAST of Moc10g28640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g28640.1	Moc10g28640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity