Moc10g27970 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g27970
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionclassical arabinogalactan protein 9-like
Locationchr10: 20843908 .. 20844387 (-)
RNA-Seq ExpressionMoc10g27970
SyntenyMoc10g27970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGCATGTGCCATGCTCGTGCTTGCTCTCTCTCTCTCTCTTGCAGCCTCCGCCATTGCTCAAGCTCCATCCCCCGCTCCAGTTCCCGCCGCCGTCGCCCCGCCCCCCACAACCCCACCTCCGGTTTCAGCGCCGCCTCCCTCCGCCGCCATGCCTCCGTCGCCAGCCATGCCTCCCGCTGCAGCATCACCGCCGCCGAGTATCTCATCTCCACCGGCCGCGACTCCACCCGCCATGCCCCCGGCGGCTACTCCGCCGTCTATGGAAACAAGCCCAAGCCCAGGCCCAGGCCCAATGCCGGACAGCCCGCCATCACCTCCAAACCCAAGCCCATCATCCATGCCGTCTCCGGGGCCGTCTCCGACGCCACCACCGGCGCCGCCGTCGAATCCTGGCTCCGGAGCCGTCGCGCACGGCGGGAACAAGGTGGCTGTTGCGGCGGTCCTGGGTGGCCTCGCAGTCCTCCTAGTTTAA

mRNA sequence

ATGGCCGCCGCATGTGCCATGCTCGTGCTTGCTCTCTCTCTCTCTCTTGCAGCCTCCGCCATTGCTCAAGCTCCATCCCCCGCTCCAGTTCCCGCCGCCGTCGCCCCGCCCCCCACAACCCCACCTCCGGTTTCAGCGCCGCCTCCCTCCGCCGCCATGCCTCCGTCGCCAGCCATGCCTCCCGCTGCAGCATCACCGCCGCCGAGTATCTCATCTCCACCGGCCGCGACTCCACCCGCCATGCCCCCGGCGGCTACTCCGCCGTCTATGGAAACAAGCCCAAGCCCAGGCCCAGGCCCAATGCCGGACAGCCCGCCATCACCTCCAAACCCAAGCCCATCATCCATGCCGTCTCCGGGGCCGTCTCCGACGCCACCACCGGCGCCGCCGTCGAATCCTGGCTCCGGAGCCGTCGCGCACGGCGGGAACAAGGTGGCTGTTGCGGCGGTCCTGGGTGGCCTCGCAGTCCTCCTAGTTTAA

Coding sequence (CDS)

ATGGCCGCCGCATGTGCCATGCTCGTGCTTGCTCTCTCTCTCTCTCTTGCAGCCTCCGCCATTGCTCAAGCTCCATCCCCCGCTCCAGTTCCCGCCGCCGTCGCCCCGCCCCCCACAACCCCACCTCCGGTTTCAGCGCCGCCTCCCTCCGCCGCCATGCCTCCGTCGCCAGCCATGCCTCCCGCTGCAGCATCACCGCCGCCGAGTATCTCATCTCCACCGGCCGCGACTCCACCCGCCATGCCCCCGGCGGCTACTCCGCCGTCTATGGAAACAAGCCCAAGCCCAGGCCCAGGCCCAATGCCGGACAGCCCGCCATCACCTCCAAACCCAAGCCCATCATCCATGCCGTCTCCGGGGCCGTCTCCGACGCCACCACCGGCGCCGCCGTCGAATCCTGGCTCCGGAGCCGTCGCGCACGGCGGGAACAAGGTGGCTGTTGCGGCGGTCCTGGGTGGCCTCGCAGTCCTCCTAGTTTAA

Protein sequence

MAAACAMLVLALSLSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAMPPAATPPSMETSPSPGPGPMPDSPPSPPNPSPSSMPSPGPSPTPPPAPPSNPGSGAVAHGGNKVAVAAVLGGLAVLLV
Homology
BLAST of Moc10g27970 vs. NCBI nr
Match: XP_023553563.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-24
Identity = 114/165 (69.09%), Postives = 130/165 (78.79%), Query Frame = 0

Query: 1   MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAM 60
           MA A AMLVLALS LSLAASAIAQ+PSPAP PA  APPP TPPPV+APP +   PP  AM
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPAVAAPPPLTPPPVAAPPTT---PPPTAM 60

Query: 61  PPAAASPPPSISSPPAATPP-AMPPAATPPSMETSPSPGPGPMPDSPPSPPNPS--PSSM 120
           PP AASPPPS+S+PP A PP  +PP A+PPSME+ PSPGP  MPDSPPSPP PS  PSS 
Sbjct: 61  PPMAASPPPSMSTPPMAAPPTVLPPMASPPSMESGPSPGPTTMPDSPPSPPGPSPGPSSE 120

Query: 121 PSPGPSPTPPPAPPSNPGSG-AVAHGGNKVA-VAAVLGGLAVLLV 160
           PSP  +P+PPP+PP  PG+G ++ HGG K A VAAVLGGLA++LV
Sbjct: 121 PSPASAPSPPPSPPP-PGAGFSIQHGGYKAAGVAAVLGGLAIVLV 161

BLAST of Moc10g27970 vs. NCBI nr
Match: XP_022923372.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 5.7e-24
Identity = 112/165 (67.88%), Postives = 128/165 (77.58%), Query Frame = 0

Query: 1   MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAM 60
           MA A AMLVLALS LSLAASAIAQ+PSPAP PA  APPP TPPPV+APP +   PP  AM
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPAVAAPPPLTPPPVAAPPTT---PPPTAM 60

Query: 61  PPAAASPPPSISSPPAATPPAM-PPAATPPSMETSPSPGPGPMPDSPPSPPNPSPSSMPS 120
           PP AASPPPS+S+PP A PP + PP A+PPSME+ PSPGP  MPDSPPSPP PSP   P 
Sbjct: 61  PPMAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPG 120

Query: 121 PGP--SPTPPPAPPSNPGSG-AVAHGGNKVA-VAAVLGGLAVLLV 160
           P P  +P+PPP+PP  PG+G ++ HGG K A VAAVLGGLA++LV
Sbjct: 121 PAPASAPSPPPSPP--PGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of Moc10g27970 vs. NCBI nr
Match: XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-19
Identity = 105/166 (63.25%), Postives = 125/166 (75.30%), Query Frame = 0

Query: 1   MAAACAMLVLALS-LSLAASAIAQAPSPAPVPA-AVAPPPTTPPPVSAPPPSAAMPPSPA 60
           MA+A AMLVLALS L+L +S+IAQ+PSPAP PA A APPP++PPPV+APP +        
Sbjct: 1   MASARAMLVLALSLLALFSSSIAQSPSPAPGPASAAAPPPSSPPPVAAPPTT-------- 60

Query: 61  MPPAAASPPPSISSPPAATPPAMPP-AATPPSMETSPSPGPGPMPDSPPSPPNPSPSSM- 120
            PP AASPPP+IS+PPAA PPA+PP  A+PPSME+  SPGPGPMPDSPPSPP PSPS M 
Sbjct: 61  -PPPAASPPPTISTPPAAAPPAIPPMMASPPSMES--SPGPGPMPDSPPSPPGPSPSPMS 120

Query: 121 ---PSPGPSPTPPPAPPSNPGSGAVAHGGNKVAVAAVLGGLAVLLV 160
              P+P P+P+PP  PP + G  ++  GG K A AAVLGGLAV LV
Sbjct: 121 MSPPTPAPAPSPPSPPPPSAGF-SIHQGGYKAAAAAVLGGLAVFLV 154

BLAST of Moc10g27970 vs. NCBI nr
Match: XP_032828802.1 (basic proline-rich protein-like, partial [Petromyzon marinus])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04
Identity = 58/110 (52.73%), Postives = 71/110 (64.55%), Query Frame = 0

Query: 25  PSPAPVPAAVAPPPTTP-PPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAMPP 84
           P P+P P +  PPP+ P PP S PPPS  +PPSP  PP+   PPPS+  PP+A PP  PP
Sbjct: 11  PPPSPPPPSPPPPPSPPTPPPSPPPPSPPLPPSPPPPPSPPPPPPSLPPPPSAPPPPSPP 70

Query: 85  AATPPSMETSPSPGPGPMPDSPPSPPNPSPSSMPSPGPSPTPPPAPPSNP 134
             +PP   + P+P P P P SPP PP+P P+  PSP P P+PPP PPS P
Sbjct: 71  PPSPPPPPSPPTPPPSPPPPSPPPPPSP-PTPPPSPPPPPSPPPPPPSPP 119

BLAST of Moc10g27970 vs. ExPASy TrEMBL
Match: A0A6J1E5X6 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111431090 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 112/165 (67.88%), Postives = 128/165 (77.58%), Query Frame = 0

Query: 1   MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAM 60
           MA A AMLVLALS LSLAASAIAQ+PSPAP PA  APPP TPPPV+APP +   PP  AM
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPAVAAPPPLTPPPVAAPPTT---PPPTAM 60

Query: 61  PPAAASPPPSISSPPAATPPAM-PPAATPPSMETSPSPGPGPMPDSPPSPPNPSPSSMPS 120
           PP AASPPPS+S+PP A PP + PP A+PPSME+ PSPGP  MPDSPPSPP PSP   P 
Sbjct: 61  PPMAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPG 120

Query: 121 PGP--SPTPPPAPPSNPGSG-AVAHGGNKVA-VAAVLGGLAVLLV 160
           P P  +P+PPP+PP  PG+G ++ HGG K A VAAVLGGLA++LV
Sbjct: 121 PAPASAPSPPPSPP--PGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of Moc10g27970 vs. ExPASy TrEMBL
Match: A0A0A0L458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.4e-13
Identity = 98/165 (59.39%), Postives = 118/165 (71.52%), Query Frame = 0

Query: 1   MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAA-VAPPPTTPPPVSAPPPSAAMPPSPA 60
           MA+A AMLVL LS LSL++S+IAQ+PSP+P PA+  APPP+TPPPV APPP+        
Sbjct: 1   MASARAMLVLLLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPV-APPPTT------- 60

Query: 61  MPPAAASPPPSISSPPAATPPAMPP-AATPPSMETSPSPGPGP-MPDSPPSPPNPSPSSM 120
            PP AASPP SIS+PPAA P A PP  A+PP ME S +P PGP MP+ PPSPP+ SP S 
Sbjct: 61  -PPPAASPPSSISTPPAAAPTATPPMMASPPPMEPSTAPAPGPAMPEGPPSPPSQSPMSP 120

Query: 121 --PSPGPSPTPPPAPPSNPGSGAVAHGGNKVAVAAVLGGLAVLLV 160
             P+P P+PTPP A P + G  ++  GG    VAAVLGGLAV+LV
Sbjct: 121 PGPAPAPAPTPPSARPRSAGF-SIHQGGYMAGVAAVLGGLAVVLV 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023553563.12.6e-2469.09classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo][more]
XP_022923372.15.7e-2467.88classical arabinogalactan protein 9-like [Cucurbita moschata][more]
XP_038903480.11.1e-1963.25classical arabinogalactan protein 9-like [Benincasa hispida][more]
XP_032828802.12.2e-0452.73basic proline-rich protein-like, partial [Petromyzon marinus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1E5X62.8e-2467.88classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A0A0L4586.4e-1359.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g27970.1Moc10g27970.1mRNA