Moc10g26170 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g26170
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 19076184 .. 19076495 (+)
RNA-Seq Expression	Moc10g26170
Synteny	Moc10g26170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGTGCCCTACCCCTGAAATTTCTATCAATGAGTTCAACTAACTATGTTTCTTTCATTGATGACTTTACTAAATACACTTGGTTGTTTCCTATTGTGCATAAGTCTGATGTTTCTGATGTGTTCCGTCACATTAAACCCTTTGTTGAAAATTTACTATCTAGTCGTATCAAAATTCTTCGAAGTGATGGCGTGGGTGAGTTTGTTAACCATTCTCTTCGTTCTTTCCTTGCATCTCATGGCATCTTACACCAAAAATCTTGTGCCTACACCTTTGAACAAAATGGTGTTGCCGAAAGGAAACATTGA

mRNA sequence

ATGTATGGTGCCCTACCCCTGAAATTTCTATCAATGAGTTCAACTAACTATGTTTCTTTCATTGATGACTTTACTAAATACACTTGGTTGTTTCCTATTGTGCATAAGTCTGATGTTTCTGATGTGTTCCGTCACATTAAACCCTTTGTTGAAAATTTACTATCTAGTCGTATCAAAATTCTTCGAAGTGATGGCGTGGGTGAGTTTGTTAACCATTCTCTTCGTTCTTTCCTTGCATCTCATGGCATCTTACACCAAAAATCTTGTGCCTACACCTTTGAACAAAATGGTGTTGCCGAAAGGAAACATTGA

Coding sequence (CDS)

ATGTATGGTGCCCTACCCCTGAAATTTCTATCAATGAGTTCAACTAACTATGTTTCTTTCATTGATGACTTTACTAAATACACTTGGTTGTTTCCTATTGTGCATAAGTCTGATGTTTCTGATGTGTTCCGTCACATTAAACCCTTTGTTGAAAATTTACTATCTAGTCGTATCAAAATTCTTCGAAGTGATGGCGTGGGTGAGTTTGTTAACCATTCTCTTCGTTCTTTCCTTGCATCTCATGGCATCTTACACCAAAAATCTTGTGCCTACACCTTTGAACAAAATGGTGTTGCCGAAAGGAAACATTGA

Protein sequence

MYGALPLKFLSMSSTNYVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRSFLASHGILHQKSCAYTFEQNGVAERKH

Homology

[Close]

BLAST of Moc10g26170 vs. NCBI nr
Match: PKU70687.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV FIDD+T++TWLFPI HKS+V+ +F + K ++ENL SS+IK LR DG GEFVN+S   
Sbjct: 60  YVLFIDDYTRFTWLFPIRHKSEVALIFSNFKSYIENLTSSKIKCLRKDGGGEFVNNSFAQ 119

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGI HQ SC YT EQNG+AERKH
Sbjct: 120 FLQKHGIAHQISCPYTPEQNGIAERKH 146

[Close]

BLAST of Moc10g26170 vs. NCBI nr
Match: PKU87026.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 118.2 bits (295), Expect = 4.1e-23
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV F+DDF+++TWLFP++HKS+V+++F + K  +ENL S +IK LR+DG  E+VNH L+ 
Sbjct: 511 YVLFVDDFSRFTWLFPMIHKSEVTNIFINFKAKIENLTSHKIKCLRTDGGTEYVNHHLKQ 570

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGI HQ SC YT EQNG+AERKH
Sbjct: 571 FLIQHGIRHQISCPYTPEQNGMAERKH 597

[Close]

BLAST of Moc10g26170 vs. NCBI nr
Match: PKU75779.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-22
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV FID++++++W+FP+ HKS+V  VF   K ++ENL S++IK LR+DG GEFVN+S  S
Sbjct: 50  YVLFIDNYSRFSWIFPLRHKSEVFAVFVTFKTYIENLTSAKIKCLRTDGGGEFVNNSFIS 109

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGI+HQ SC YT EQNGVAERKH
Sbjct: 110 FLKQHGIVHQISCPYTPEQNGVAERKH 136

[Close]

BLAST of Moc10g26170 vs. NCBI nr
Match: PKU88027.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV FIDD++++TWLFP+  KS+V ++F + K ++EN  SS+IK LR+DG GEFV+ SL  
Sbjct: 521 YVLFIDDYSRFTWLFPMRQKSEVFNIFVNFKSYIENFTSSKIKCLRTDGGGEFVSTSLSQ 580

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGILHQ SC YT +QNGVAERKH
Sbjct: 581 FLKQHGILHQISCPYTPKQNGVAERKH 607

[Close]

BLAST of Moc10g26170 vs. NCBI nr
Match: PKU70166.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV F+DD++++TWLFP+  KS+V D F H K  VEN  S +IKILR+DG  EFVN+S  S
Sbjct: 533 YVIFVDDYSRFTWLFPLKTKSEVFDTFIHFKSQVENYTSRKIKILRTDGRTEFVNNSFSS 592

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGI+HQ SC YT EQNGV ERKH
Sbjct: 593 FLKHHGIIHQLSCPYTPEQNGVVERKH 619

[Close]

BLAST of Moc10g26170 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-16
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV F+D FT+YTWL+P+  KS V D F   K  VEN   +RI  L SD  GEFV   LR 
Sbjct: 524 YVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRD 583

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           +L+ HGI H  S  +T E NG++ERKH
Sbjct: 584 YLSQHGISHFTSPPHTPEHNGLSERKH 608

[Close]

BLAST of Moc10g26170 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-14
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV F+D FT+YTWL+P+  KS V + F   K  +EN   +RI    SD  GEFV  +L  
Sbjct: 545 YVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFV--ALWE 604

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           + + HGI H  S  +T E NG++ERKH
Sbjct: 605 YFSQHGISHLTSPPHTPEHNGLSERKH 629

[Close]

BLAST of Moc10g26170 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-11
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 6   PLKFLSMSSTNY-VSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSD 65
           P++  SM    Y V+FIDD ++  W++ +  K  V  VF+     VE     ++K LRSD
Sbjct: 491 PMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSD 550

Query: 66  GVGEFVNHSLRSFLASHGILHQKSCAYTFEQNGVAER 102
             GE+ +     + +SHGI H+K+   T + NGVAER
Sbjct: 551 NGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAER 587

[Close]

BLAST of Moc10g26170 vs. ExPASy TrEMBL
Match: A0A2I0W4W2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca016885 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV FIDD+T++TWLFPI HKS+V+ +F + K ++ENL SS+IK LR DG GEFVN+S   
Sbjct: 60  YVLFIDDYTRFTWLFPIRHKSEVALIFSNFKSYIENLTSSKIKCLRKDGGGEFVNNSFAQ 119

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGI HQ SC YT EQNG+AERKH
Sbjct: 120 FLQKHGIAHQISCPYTPEQNGIAERKH 146

[Close]

BLAST of Moc10g26170 vs. ExPASy TrEMBL
Match: A0A2I0XGI6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013973 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 52/87 (59.77%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV F+DDF+++TWLFP++HKS+V+++F + K  +ENL S +IK LR+DG  E+VNH L+ 
Sbjct: 511 YVLFVDDFSRFTWLFPMIHKSEVTNIFINFKAKIENLTSHKIKCLRTDGGTEYVNHHLKQ 570

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGI HQ SC YT EQNG+AERKH
Sbjct: 571 FLIQHGIRHQISCPYTPEQNGMAERKH 597

[Close]

BLAST of Moc10g26170 vs. ExPASy TrEMBL
Match: A0A2I0WJE1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca019735 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV FID++++++W+FP+ HKS+V  VF   K ++ENL S++IK LR+DG GEFVN+S  S
Sbjct: 50  YVLFIDNYSRFSWIFPLRHKSEVFAVFVTFKTYIENLTSAKIKCLRTDGGGEFVNNSFIS 109

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGI+HQ SC YT EQNGVAERKH
Sbjct: 110 FLKQHGIVHQISCPYTPEQNGVAERKH 136

[Close]

BLAST of Moc10g26170 vs. ExPASy TrEMBL
Match: A0A2I0W3C6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca010287 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV F+DD++++TWLFP+  KS+V D F H K  VEN  S +IKILR+DG  EFVN+S  S
Sbjct: 533 YVIFVDDYSRFTWLFPLKTKSEVFDTFIHFKSQVENYTSRKIKILRTDGRTEFVNNSFSS 592

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGI+HQ SC YT EQNGV ERKH
Sbjct: 593 FLKHHGIIHQLSCPYTPEQNGVVERKH 619

[Close]

BLAST of Moc10g26170 vs. ExPASy TrEMBL
Match: A0A2I0XJE0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca019477 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.2e-22
Identity = 53/87 (60.92%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 17  YVSFIDDFTKYTWLFPIVHKSDVSDVFRHIKPFVENLLSSRIKILRSDGVGEFVNHSLRS 76
           YV FIDD++++TWLFP+  KS+V ++F + K ++EN  SS+IK LR+DG GEFV+ SL  
Sbjct: 521 YVLFIDDYSRFTWLFPMRQKSEVFNIFVNFKSYIENFTSSKIKCLRTDGGGEFVSTSLSQ 580

Query: 77  FLASHGILHQKSCAYTFEQNGVAERKH 104
           FL  HGILHQ SC YT +QNGVAERKH
Sbjct: 581 FLKQHGILHQISCPYTPKQNGVAERKH 607

The following BLAST results are available for this feature:

BLAST of Moc10g26170 vs. NCBI nr


Match Name	E-value	Identity	Description
PKU70687.1	2.2e-24	64.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu...	[more]
PKU87026.1	4.1e-23	59.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu...	[more]
PKU75779.1	3.4e-22	60.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu...	[more]
PKU88027.1	4.5e-22	60.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu...	[more]
PKU70166.1	4.5e-22	62.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu...	[more]

BLAST of Moc10g26170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.7e-16	51.72	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.8e-14	45.98	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	2.2e-11	37.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc10g26170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I0W4W2	1.0e-24	64.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena...	[more]
A0A2I0XGI6	2.0e-23	59.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena...	[more]
A0A2I0WJE1	1.7e-22	60.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena...	[more]
A0A2I0W3C6	2.2e-22	62.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena...	[more]
A0A2I0XJE0	2.2e-22	60.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena...	[more]

BLAST of Moc10g26170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 20..91 e-value: 2.3E-8 score: 34.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..103 score: 12.740964
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 5..103 e-value: 1.7E-19 score: 72.1
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 8..92
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 8..92
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 17..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g26170.1	Moc10g26170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding