Moc10g24910 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g24910
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Photosystem II CP43 reaction center protein
Location	chr10: 17881990 .. 17884959 (+)
RNA-Seq Expression	Moc10g24910
Synteny	Moc10g24910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCGAGAATGATTTCTAAGTTTGAAAAATATTGGAGTATGATTCATGGTGTCTTGGCAATAGCTACAGTATTGGATCCTAGATTTAAGATGAGATTGATTGAATTTTATTATTCTCAAATCTATGGAGCTCAATATTCAGATGAAATTCAACGTGTTCAGGACATGTGCAATGACTTAGTGAGGTATTATAAATCAAATTCAAGTATGGCAGGAGAATCTTCAAGTTCTACAGTTACTTCTTTGACCCCAAGGCGAGATGTGAATAATTGTGTTGTTCAAGAGAAAGACAGATTTCTCAAGTTCGATGAGTATGTTAGTTCTATTGCAAATACTGACAATGCCAAATCCAATCTAGATCTTTATTTAGAGGAAAGTCTTTGGCCACGATCCGATGACTTTGAGATTTTGACTTGGTGGAAGTTAAATGGGGTTAAGTATCCTATTTTGTATCAAATTGCCAAAGATATTTTAGTTGTTCTTATCACTACTGTTGCTTCGGAGTCTGCATTTAGTATTGGTGGTAGACATGTAAGTCCATATTGTCGTAGACTTCATGCTAACTTACTTGGGGCTTTGATGTGCGCTCAAGATTGGCTATGGGCACAAGGTATGGGTAAATCTTTACAAAGTCATGCTATTTACTTTTTAAAATATTAAATGTCTTATTGAATATTGAATATATGTTGTTATCTTTGTACTTGTTTTAAATAGATACAGCCTCTGATGAAAATGAAGTGGCAACTATTTTGGAGGATCGGATCCAGATGATGAGGTAAGTGATTTGTTTGTGTATTTTAATTAACTTAGTTATTGATTGATGATAACATATATTCTTTTTCTTTTTCTTTTTCAAGAATCATGCATCATGAATTAAAGGAGGAAATTGAAGTTTCTATTATAACGTTTAGTTTTAGTTTATATATTTTTGAATGATTTGTGATTTTGTAAAAATTTAACTTTTTTCGGATTTATTATTGAGATGTTGCAAACTTGTTGTGATGTGTTTACATTTTATATTCAATTATACTCGGTGTGACAAATGGTATGATTTCTTTCCTAGGAAGGTGGTGTTGCATCTAATATCTCATTTCAAGCTTGAGGTTTGAGGTTTACTCTTCATGAGTCTCACTCTGATGCTACGACGCAAGCTTGAGATTGAGATAGCTAAGCGGCAATGAGATTGAGATAGTTGTTGGTGCGTGCGATGGTGGAGCAATACTATAGTGGATAAGAGGGACGACGACAAGCGATTTGTGAGAGGTAGAAGCCATAGTGAAGCAATAGAGAGAGGTAAAGGGGGCGGAACAGACGTGAAAGGAGAGAAATAGGTTTCTAGGGTTTGTAATTTATATAGTCAGTCTTTATTCAAGAAAAAATAAATGGTAACTTATAGGTAGTCTTTTGTTATAAACTAAATCTTATTTTTGGGCTACATGGAATTATTTTGGGCTACTAAAGAGAAAAATAAGTAGTAAAGTAACTTGACTAATTTTAGAAATAAATTACAACAAATAATGTATGGTATTTTATAAATTAATTATCAATACAATTTTAATTTAAACTTAACGGTTGAAAAATACATACAATACATGTGAGTATTAACATATTATTGATTTGAATAAAATGTTTAAATTAAATTTCGTAGCATAATAATTAATTAACTTTTTCTCTTAAACCATAAATTTGAATAAAAATTAAATTTCATAGAATTATAAGTAAATAGTTTATTGTGATATTTGTTTATCCATTCATTATTTTCAATTAATTAATCAGATATGGAAAAATATAATTAAATAATATAGCTTAATCACAATAAAACATAATATAATGTATATGACGTTCACTAAACATGGTATCTTTTTTATTTAAATCTCAATAAACAATATTTATAAAAAAAATTTCAATAAACAATTTATTCATATAATATAAAATAAATATCTAATAGGTTCTTTAAAAAATAATAATAAGACGTTGAAATCAACATTTTTTATATTATAATTTCTAACTTTTATTAATTTTTATATTTTTCATATTTTAAAATAAAACTATAAAATTTTATGTGCATATTCGTATCTGTTACTGGTAATATATAAATGGGTCAAGGAGAAACCTTTTGTCCCTGTTTTGTCTTTTTAATTTAAATATTTTCGTAGTTATCTTGGGGACAATTTTGTCCTTTAAATATAAAATTTTTCTCATTCATATTCTCCCCTTCTCTTTCTTCAACACACCACCCCCTCCCATTTCTCTCTTTTTTCCTTTTTTTTCCCTCTCTTAATTTCACTTTATTTTTATTATTTAATAATGTCAAATGTTGGAACGTAAAGAGTTAGTATATGTATAATATTGTTTTTTTAATTTCTATGAATTAATTAAAAAATTATAACTTATTTTTAATTATATTAATAAAGCATTTCAAAAGTTTTGTAATTATTTATCTTCTCCAACTATATAAAGAGTTTTCTCCTACTCTCGAGCATTCTTTATTCTTCGTTATGTTTTTCTCCTTTAGTCAATATCTTGTATTTTTCTTATATTTTAGTTTGATTGTTTGATCTAATTTTTATGTTTTCTTTCAATGCAATCATTACCTACAATATATAAGTAATTTATTTAAAAAGCTTACAAGATTGACATACTTGCATTTCTTTCTTTTTTTTTTTCTTTTTTTTTTTACCTTCTGTGTCACTCTCATTTTTAATGACTCAAATCAGAAATCAAAACAAAATTTTCTATTCTTTTATGCATCGTTATGTTTAAAAACAAAAAATGATGAAAAATCCCTGAATATGTGTTTTTTTTAGAAAAAAATAAAGTAATCGATGAATATGTGTTAAGTTTTATTCTTGCTTGTTCGTAGGTCATTTATGGCATGCAAGAGGGGCTCGTGCAGCTGTCGCAAGATTTGAAAAAGGAATTGATCATGATTTTGAACCTGTTCTTTTCATAACTTCTCTTAACTGA

mRNA sequence

ATGGCATCGAGAATGATTTCTAAGTTTGAAAAATATTGGAGTATGATTCATGGTGTCTTGGCAATAGCTACAGTATTGGATCCTAGATTTAAGATGAGATTGATTGAATTTTATTATTCTCAAATCTATGGAGCTCAATATTCAGATGAAATTCAACGTGTTCAGGACATGTGCAATGACTTAGTGAGGTATTATAAATCAAATTCAAGTATGGCAGGAGAATCTTCAAGTTCTACAGTTACTTCTTTGACCCCAAGGCGAGATGTGAATAATTGTGTTGTTCAAGAGAAAGACAGATTTCTCAAGTTCGATGAACTTCATGCTAACTTACTTGGGGCTTTGATGTGCGCTCAAGATTGGCTATGGGCACAAGATACAGCCTCTGATGAAAATGAAGTGGCAACTATTTTGGAGGATCGGATCCAGATGATGAGCAATACTATAGTGGATAAGAGGGACGACGACAAGCGATTTGTGAGAGGTAGAAGCCATAGTGAAGCAATAGAGAGAGGTCATTTATGGCATGCAAGAGGGGCTCGTGCAGCTGTCGCAAGATTTGAAAAAGGAATTGATCATGATTTTGAACCTGTTCTTTTCATAACTTCTCTTAACTGA

Coding sequence (CDS)

ATGGCATCGAGAATGATTTCTAAGTTTGAAAAATATTGGAGTATGATTCATGGTGTCTTGGCAATAGCTACAGTATTGGATCCTAGATTTAAGATGAGATTGATTGAATTTTATTATTCTCAAATCTATGGAGCTCAATATTCAGATGAAATTCAACGTGTTCAGGACATGTGCAATGACTTAGTGAGGTATTATAAATCAAATTCAAGTATGGCAGGAGAATCTTCAAGTTCTACAGTTACTTCTTTGACCCCAAGGCGAGATGTGAATAATTGTGTTGTTCAAGAGAAAGACAGATTTCTCAAGTTCGATGAACTTCATGCTAACTTACTTGGGGCTTTGATGTGCGCTCAAGATTGGCTATGGGCACAAGATACAGCCTCTGATGAAAATGAAGTGGCAACTATTTTGGAGGATCGGATCCAGATGATGAGCAATACTATAGTGGATAAGAGGGACGACGACAAGCGATTTGTGAGAGGTAGAAGCCATAGTGAAGCAATAGAGAGAGGTCATTTATGGCATGCAAGAGGGGCTCGTGCAGCTGTCGCAAGATTTGAAAAAGGAATTGATCATGATTTTGAACCTGTTCTTTTCATAACTTCTCTTAACTGA

Protein sequence

MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCNDLVRYYKSNSSMAGESSSSTVTSLTPRRDVNNCVVQEKDRFLKFDELHANLLGALMCAQDWLWAQDTASDENEVATILEDRIQMMSNTIVDKRDDDKRFVRGRSHSEAIERGHLWHARGARAAVARFEKGIDHDFEPVLFITSLN

Homology

[Close]

BLAST of Moc10g24910 vs. NCBI nr
Match: TYK23151.1 (zinc finger BED domain-containing protein DAYSLEEPER-like [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-22
Identity = 62/114 (54.39%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           MASRMISKFEKYWS+IH  LAIAT LDP+FKMRLIEFY+ QIY + Y  EI+RV+++C D
Sbjct: 1   MASRMISKFEKYWSVIHSALAIATALDPKFKMRLIEFYFPQIYESHYVAEIKRVRELCCD 60

Query: 61  LVRYYKSNSSMAGESSSSTVTSL-TPRRDVNN---CVVQEKDRFLKFDELHANL 111
           L+ +Y S S    E   ST T   T +RD ++    +V  KDR LKF++  +N+
Sbjct: 61  LMTFYSSKSRTIEEPQRSTSTPYSTSKRDGSSSKTSLVNRKDRHLKFEKFVSNV 114

[Close]

BLAST of Moc10g24910 vs. NCBI nr
Match: XP_038884881.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida])

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-21
Identity = 51/69 (73.91%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           MASRMI+KFEKYWS+IHGVLAIATVLDPRFKMRLI+FY+ QIYG  ++ EI+RV+D+C D
Sbjct: 196 MASRMIAKFEKYWSVIHGVLAIATVLDPRFKMRLIQFYFPQIYGFHHTVEIKRVRDLCCD 255

Query: 61  LVRYYKSNS 70
           L+++Y SNS
Sbjct: 256 LMKFYSSNS 264

[Close]

BLAST of Moc10g24910 vs. NCBI nr
Match: KAG5544434.1 (hypothetical protein RHGRI_017006 [Rhododendron griersonianum])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-18
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           MA++MI K+EKYW++IH +L +A VLDPRFKM+L+E+Y+++IYG     EI+RV + C +
Sbjct: 464 MAAQMIEKYEKYWTIIHSILGVAAVLDPRFKMKLVEYYFNRIYGEGAIFEIERVHNYCKE 523

Query: 61  LVRYYKSNSSMAGESSSSTVTSLTPRRD---------VNNCVVQ------EKDRFLKFD- 120
           L++ Y+   +  G +SS  V S     D          +N   Q      E DR+L+ D 
Sbjct: 524 LLKEYEVKLNNGGIASSCQVESTMEVDDDLSDFDVFVTSNQTSQVSTKKSELDRYLEEDV 583

Query: 121 ------------------------ELHANLLGALMCAQDWLWAQDT-ASDENEVATILED 140
                                    LH   + ALMCA+ WL AQ++  ++ NE A++L+D
Sbjct: 584 IPRGNQDFDVLACTSGRVVTPHRSRLHPKTIEALMCARSWLLAQESEGNNSNEFASVLDD 643

[Close]

BLAST of Moc10g24910 vs. NCBI nr
Match: KGN44253.1 (hypothetical protein Csa_016011 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-17
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 8  KFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCNDLVRYYKS 67
          ++EKYWS+IHGVLAIATVLDPRFKMRLIEFY+ QIYG+ Y  EI+RV+++C DL++ Y S
Sbjct: 6  RYEKYWSVIHGVLAIATVLDPRFKMRLIEFYFRQIYGSHYIVEIERVRELCCDLMKVYSS 65

Query: 68 NSSMAGESSSSTVTSLTPRRD 89
           SS+  E  S++ +  T +RD
Sbjct: 66 KSSIIEEPPSTSYS--TSKRD 84

[Close]

BLAST of Moc10g24910 vs. NCBI nr
Match: KAG5533348.1 (hypothetical protein RHGRI_027517 [Rhododendron griersonianum])

HSP 1 Score: 98.6 bits (244), Expect = 6.6e-17
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           MA RM+ KF+KYWS++HGV+ ++ VLDPR+K+ ++EFY+  ++   Y++E+ +V+ +C  
Sbjct: 159 MAKRMVEKFDKYWSVVHGVVGVSAVLDPRYKINVLEFYFKLLFPTSYTEEVDKVRALCYK 218

Query: 61  LVRYYKSNSSM---AGESSS----------------------STVTSLTPRRDVNNCVVQ 120
           L++ Y+  +SM    G+SSS                      STV S +        V  
Sbjct: 219 LLKEYQCPNSMMEGIGDSSSQSSSIDYPILQAMARDLLAIPVSTVASESAFSTSGRLVSP 278

Query: 121 EKDRFLKFDELHANLLGALMCAQDWLWAQDTASDE 131
            + R      LH + + ALMCAQ WLWA +   +E
Sbjct: 279 HRSR------LHPDTMEALMCAQSWLWAAEMKGNE 307

[Close]

BLAST of Moc10g24910 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.1e-10
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           +A  M  +F+KYW   + VLAIA V+DPRFKM+L+EF YS+IYG + +  ++ V D  ++
Sbjct: 496 IAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHE 555

Query: 61  LVRYY 66
           L + Y
Sbjct: 556 LYKEY 560

[Close]

BLAST of Moc10g24910 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-09
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           +A  M  +F+KYW   + VLAIA V+DPRFKM+L+EF YS+IYG + +  ++ V D  ++
Sbjct: 496 IAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHE 555

Query: 61  LVRYY 66
           L   Y
Sbjct: 556 LYNEY 560

[Close]

BLAST of Moc10g24910 vs. ExPASy Swiss-Prot
Match: Q2QD93 (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-08
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 171 GHLWHARGARAAVARFEKGIDHDFEPVLFITSLN 205
           GHLWHA  ARAA A FEKGID DFEPVLF+T LN
Sbjct: 440 GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN 473

[Close]

BLAST of Moc10g24910 vs. ExPASy Swiss-Prot
Match: A1XFV1 (Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-08
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 171 GHLWHARGARAAVARFEKGIDHDFEPVLFITSLN 205
           GHLWHA  ARAA A FEKGID DFEPVLF+T LN
Sbjct: 440 GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN 473

[Close]

BLAST of Moc10g24910 vs. ExPASy Swiss-Prot
Match: Q6EW52 (Photosystem II CP43 reaction center protein OS=Nymphaea alba OX=34301 GN=psbC PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-08
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 171 GHLWHARGARAAVARFEKGIDHDFEPVLFITSLN 205
           GHLWHA  ARAA A FEKGID DFEPVLF+T LN
Sbjct: 440 GHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN 473

[Close]

BLAST of Moc10g24910 vs. ExPASy TrEMBL
Match: A0A5D3DHK7 (Zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001630 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 62/114 (54.39%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           MASRMISKFEKYWS+IH  LAIAT LDP+FKMRLIEFY+ QIY + Y  EI+RV+++C D
Sbjct: 1   MASRMISKFEKYWSVIHSALAIATALDPKFKMRLIEFYFPQIYESHYVAEIKRVRELCCD 60

Query: 61  LVRYYKSNSSMAGESSSSTVTSL-TPRRDVNN---CVVQEKDRFLKFDELHANL 111
           L+ +Y S S    E   ST T   T +RD ++    +V  KDR LKF++  +N+
Sbjct: 61  LMTFYSSKSRTIEEPQRSTSTPYSTSKRDGSSSKTSLVNRKDRHLKFEKFVSNV 114

[Close]

BLAST of Moc10g24910 vs. ExPASy TrEMBL
Match: A0A0A0K403 (DUF4413 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G235230 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-18
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 8  KFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCNDLVRYYKS 67
          ++EKYWS+IHGVLAIATVLDPRFKMRLIEFY+ QIYG+ Y  EI+RV+++C DL++ Y S
Sbjct: 6  RYEKYWSVIHGVLAIATVLDPRFKMRLIEFYFRQIYGSHYIVEIERVRELCCDLMKVYSS 65

Query: 68 NSSMAGESSSSTVTSLTPRRD 89
           SS+  E  S++ +  T +RD
Sbjct: 66 KSSIIEEPPSTSYS--TSKRD 84

[Close]

BLAST of Moc10g24910 vs. ExPASy TrEMBL
Match: A0A2N9F2B4 (BED-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9135 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 61/185 (32.97%), Postives = 95/185 (51.35%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           MA RM+ KF+ YW++IHGV+A+AT+LDPR+K+ L+E+Y+  IYG Q  DEIQR++D+C +
Sbjct: 470 MAFRMLEKFDSYWNVIHGVMAVATILDPRYKIELLEYYFPIIYGDQADDEIQRIRDICYE 529

Query: 61  LVRYYKS----NSSMAGESSSSTVTSLTPRR-DVNNCVVQEK------------------ 120
           ++R Y S      +  G  ++  V ++     + +N V Q+K                  
Sbjct: 530 MLRDYNSGRMGKEANRGTCANEDVMAIDDSLVNFDNFVSQKKKANGPKYPTLQRIARDIL 589

Query: 121 ----------------DRFLK--FDELHANLLGALMCAQDWLWA-----QDTASDENEVA 140
                            R L     +LH   + ALMCAQ+WLWA       T  ++ ++ 
Sbjct: 590 AIPVSTVASESAFSTSGRLLSPHRSKLHPKTVEALMCAQNWLWAGIKGTSSTKEEDMDIQ 649

[Close]

BLAST of Moc10g24910 vs. ExPASy TrEMBL
Match: A0A2N9ED94 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS530 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 61/185 (32.97%), Postives = 95/185 (51.35%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           MA RM+ KF+ YW++IHGV+A+AT+LDPR+K+ L+E+Y+  IYG Q  DEIQR++D+C +
Sbjct: 225 MAFRMLEKFDSYWNVIHGVMAVATILDPRYKIELLEYYFPIIYGDQADDEIQRIRDICYE 284

Query: 61  LVRYYKS----NSSMAGESSSSTVTSLTPRR-DVNNCVVQEK------------------ 120
           ++R Y S      +  G  ++  V ++     + +N V Q+K                  
Sbjct: 285 MLRDYNSGRMGKEANRGTCANEDVMAIDDSLVNFDNFVSQKKKANGPKYPTLQRIARDIL 344

Query: 121 ----------------DRFLK--FDELHANLLGALMCAQDWLWA-----QDTASDENEVA 140
                            R L     +LH   + ALMCAQ+WLWA       T  ++ ++ 
Sbjct: 345 AIPVSTVASESAFSTSGRLLSPHRSKLHPKTVEALMCAQNWLWAGIKGTSSTKEEDMDIQ 404

[Close]

BLAST of Moc10g24910 vs. ExPASy TrEMBL
Match: A0A803PTU2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.5e-16
Identity = 40/68 (58.82%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           MAS M+ KFE+YW+ IHG+LAIATVLDPRFKM+LIE+Y+ ++Y   Y +E++R++ +C D
Sbjct: 295 MASNMMDKFEQYWTSIHGILAIATVLDPRFKMKLIEYYFPKLYVGDYQNEVERIRMLCYD 354

Query: 61  LVRYYKSN 69
           LV+ YK N
Sbjct: 355 LVKEYKPN 362

[Close]

BLAST of Moc10g24910 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-08
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1   MASRMISKFEKYWSMIHGVLAIATVLDPRFKMRLIEFYYSQIYGAQYSDEIQRVQDMCND 60
           +A  M  K +KYW     VLA+A V+DPRFKM+L+EF +S+I+G      I+ V D  ++
Sbjct: 491 IAKTMQEKVDKYWRDCSLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKTVDDGIHE 550

Query: 61  LVRYYKSNSSMAGESS 77
           L   Y +  S    +S
Sbjct: 551 LFTEYMALPSPQNTTS 566

[Close]

BLAST of Moc10g24910 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-08
Identity = 26/34 (76.47%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 171 GHLWHARGARAAVARFEKGIDHDFEPVLFITSLN 205
           GHLWHA  ARAA A FEKGID DFEPVL +T LN
Sbjct: 440 GHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN 473

The following BLAST results are available for this feature:

BLAST of Moc10g24910 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23151.1	3.1e-22	54.39	zinc finger BED domain-containing protein DAYSLEEPER-like [Cucumis melo var. mak...	[more]
XP_038884881.1	9.9e-21	73.91	zinc finger BED domain-containing protein RICESLEEPER 2-like [Benincasa hispida]	[more]
KAG5544434.1	3.5e-18	35.00	hypothetical protein RHGRI_017006 [Rhododendron griersonianum]	[more]
KGN44253.1	1.0e-17	60.49	hypothetical protein Csa_016011 [Cucumis sativus]	[more]
KAG5533348.1	6.6e-17	34.19	hypothetical protein RHGRI_027517 [Rhododendron griersonianum]	[more]

BLAST of Moc10g24910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AVI0	8.1e-10	46.15	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]
B9FJG3	1.4e-09	46.15	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
Q2QD93	4.5e-08	79.41	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
A1XFV1	4.5e-08	79.41	Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE...	[more]
Q6EW52	4.5e-08	79.41	Photosystem II CP43 reaction center protein OS=Nymphaea alba OX=34301 GN=psbC PE...	[more]

BLAST of Moc10g24910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHK7	1.5e-22	54.39	Zinc finger BED domain-containing protein DAYSLEEPER-like OS=Cucumis melo var. m...	[more]
A0A0A0K403	4.9e-18	60.49	DUF4413 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G235230 PE=...	[more]
A0A2N9F2B4	1.4e-17	32.97	BED-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9135 ...	[more]
A0A2N9ED94	1.4e-17	32.97	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS530 PE=4 SV=1	[more]
A0A803PTU2	3.5e-16	58.82	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Moc10g24910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	2.1e-08	39.47	BED zinc finger ;hAT family dimerisation domain	[more]
ATCG00280.1	2.7e-08	76.47	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025525	hAT-like transposase, RNase-H fold	PFAM	PF14372	DUF4413	coord: 1..65 e-value: 1.9E-17 score: 63.3
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 1..102
None	No IPR available	PANTHER	PTHR23272:SF148	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE	coord: 1..102
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 4..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g24910.1	Moc10g24910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016740	transferase activity