Moc10g24890 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g24890
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Locationchr10: 17878478 .. 17879197 (-)
RNA-Seq ExpressionMoc10g24890
SyntenyMoc10g24890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAACTATGCAAATATTTTGAAGGATATCTTGACTAAGAAAAGAAGGTTTGGAGAGTTTGAAATCGTAGCTTTAACCAAGGAGCACAGTGCAATTTTAACAGACAAGCTTCCACAGAAAATTTGGGATCCAGGGAGTTTCACTATTCCAATCTCTATTGGTGGAAAGAATGTGGGTCATGCTGTATGCAATTTGGGTGTAAGCATAAACCTCATGTCATTGTTAGTATATCAGAGGTTGGGTATTGGTGAAGTAAGGCCCACCACGGTGACACTACAGCTAGCTGACATGTCAATCACTCACCTAGAGGGCAAGATCGAATATGTGTAAGTGCAGGTGAACAAATTCAATTTCCCAGTTGACTTCATCATCCTCGATTATGAAGCAGACAATGAGATCCCAATAATTTTGGGGTGGCCTTTTCTATCCACCGGTAGGGCGCTAATAGATGTGCAGAATGGGTAGTTAACCATGAGATTGAACGATCAACAGGTAACATTTTCTATTTTTAATTCTGTTAAATTCCTTGCTGATGTAGAAGAATGTTCTCTCTTAAGACTTGCAGATGACTTGCAGAGTAAACAAATAAAAAAGGAGACCTTGTTGGATCACTTGGAGAAAGAACTTATCATAGCCTACGAACATGTAGAGGACACTGTCGATGTTGTAGCATCTCAGCCCACGAGCAGCTCCAACGATGAAGAAGAAGAAGATTGA

mRNA sequence

ATGCCTAACTATGCAAATATTTTGAAGGATATCTTGACTAAGAAAAGAAGGTTTGGAGAGTTTGAAATCGTAGCTTTAACCAAGGAGCACAGTGCAATTTTAACAGACAAGCTTCCACAGAAAATTTGGGATCCAGGGAGTTTCACTATTCCAATCTCTATTGGTGGAAAGAATGTGGGTCATGCTGTATGCAATTTGGGTGTAAGCATAAACCTCATGTCATTGTTAGTATATCAGAGGTTGGGTATTGGTGAAGTGAACAAATTCAATTTCCCAGTTGACTTCATCATCCTCGATTATGAAGCAGACAATGAGATCCCAATAATTTTGGGGTGGCCTTTTCTATCCACCGAAGAATGTTCTCTCTTAAGACTTGCAGATGACTTGCAGAGTAAACAAATAAAAAAGGAGACCTTGTTGGATCACTTGGAGAAAGAACTTATCATAGCCTACGAACATGTAGAGGACACTGTCGATGTTGTAGCATCTCAGCCCACGAGCAGCTCCAACGATGAAGAAGAAGAAGATTGA

Coding sequence (CDS)

ATGCCTAACTATGCAAATATTTTGAAGGATATCTTGACTAAGAAAAGAAGGTTTGGAGAGTTTGAAATCGTAGCTTTAACCAAGGAGCACAGTGCAATTTTAACAGACAAGCTTCCACAGAAAATTTGGGATCCAGGGAGTTTCACTATTCCAATCTCTATTGGTGGAAAGAATGTGGGTCATGCTGTATGCAATTTGGGTGTAAGCATAAACCTCATGTCATTGTTAGTATATCAGAGGTTGGGTATTGGTGAAGTGAACAAATTCAATTTCCCAGTTGACTTCATCATCCTCGATTATGAAGCAGACAATGAGATCCCAATAATTTTGGGGTGGCCTTTTCTATCCACCGAAGAATGTTCTCTCTTAAGACTTGCAGATGACTTGCAGAGTAAACAAATAAAAAAGGAGACCTTGTTGGATCACTTGGAGAAAGAACTTATCATAGCCTACGAACATGTAGAGGACACTGTCGATGTTGTAGCATCTCAGCCCACGAGCAGCTCCAACGATGAAGAAGAAGAAGATTGA

Protein sequence

MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVGHAVCNLGVSINLMSLLVYQRLGIGEVNKFNFPVDFIILDYEADNEIPIILGWPFLSTEECSLLRLADDLQSKQIKKETLLDHLEKELIIAYEHVEDTVDVVASQPTSSSNDEEEED
Homology
BLAST of Moc10g24890 vs. NCBI nr
Match: XP_022156989.1 (uncharacterized protein LOC111023818 [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 7.6e-46
Identity = 114/210 (54.29%), Postives = 124/210 (59.05%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNY   LKDIL KKRR GEFEIVALTKE SAILT KLPQK+ DPGSFTIP+ IGGKNVG
Sbjct: 57  MPNYVKFLKDILAKKRRLGEFEIVALTKEFSAILTGKLPQKMGDPGSFTIPVLIGGKNVG 116

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGE----------------------------VNKFNFP 120
           HA+C+LG SINLM L VYQ+LGIGE                            V+KF FP
Sbjct: 117 HALCDLGASINLMPLSVYQKLGIGEARPITVTLQLADRSITYLEGKIEDVLVQVDKFIFP 176

Query: 121 VDFIILDYEADNEIPIILGWPFLST----------------------------------- 148
            DFIILDYEAD EIPIILG PFLST                                   
Sbjct: 177 ADFIILDYEADKEIPIILGRPFLSTGRALIDVHNGELTIRVNDQQVTLSIFNSIKYPIDV 236

BLAST of Moc10g24890 vs. NCBI nr
Match: XP_022158940.1 (uncharacterized protein LOC111025396 [Momordica charantia])

HSP 1 Score: 174.9 bits (442), Expect = 6.3e-40
Identity = 88/124 (70.97%), Postives = 96/124 (77.42%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNYA ILKDILTKKRRFGEFE + LTKE SAILTDKLPQKIWDP SFTIPISIGGKNV 
Sbjct: 1   MPNYAKILKDILTKKRRFGEFETITLTKEFSAILTDKLPQKIWDPESFTIPISIGGKNVS 60

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGEVNKFNFPVDFIILDYEADNEIPIILGWPFLSTEEC 120
           H +C+L V INLM L          V+KF FP DFI++DYEADNEIPIILG PFL+T   
Sbjct: 61  HDLCDLRVGINLMPL---------SVDKFIFPADFIVIDYEADNEIPIILGRPFLATSRA 115

Query: 121 SLLR 125
            + R
Sbjct: 121 LIDR 115

BLAST of Moc10g24890 vs. NCBI nr
Match: XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-35
Identity = 91/204 (44.61%), Postives = 120/204 (58.82%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNY   LKDILTKKRR GEFE VALT+  SA+L  K+P K+ DPGSFTIP SIGG++VG
Sbjct: 377 MPNYVKFLKDILTKKRRLGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVG 436

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGE----------------------------VNKFNFP 120
            A+C+LG SINLM + ++++LGIGE                            V+KF FP
Sbjct: 437 RALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFP 496

Query: 121 VDFIILDYEADNEIPIILGWPFLST--------------------EECSLLRLADDLQSK 157
            DFIILDYEAD ++PIILG PFL+T                    EECS + + D + ++
Sbjct: 497 ADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRIPDEIEECSRISVIDSIVAE 556

BLAST of Moc10g24890 vs. NCBI nr
Match: XP_024989151.1 (uncharacterized protein LOC112523699 [Cynara cardunculus var. scolymus])

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-34
Identity = 80/145 (55.17%), Postives = 96/145 (66.21%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MP+Y   LKDIL KKRRF EFE ++LTKE SA+LT K+P K+ DPGSFTIP SIGGK VG
Sbjct: 308 MPSYVKFLKDILNKKRRFSEFETISLTKECSALLTCKIPPKLKDPGSFTIPCSIGGKEVG 367

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGE----------------------------VNKFNFP 118
           HA+C+LGVSIN M L ++ +LGIGE                            V+KF FP
Sbjct: 368 HALCDLGVSINPMPLSIFNQLGIGEVRATTVTLQLADRSLAYPKGKIEDMLVKVDKFIFP 427

BLAST of Moc10g24890 vs. NCBI nr
Match: XP_030478287.1 (uncharacterized protein LOC115695357 [Cannabis sativa])

HSP 1 Score: 155.2 bits (391), Expect = 5.1e-34
Identity = 80/145 (55.17%), Postives = 97/145 (66.90%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNY   LKDILTKKRR GEFE VALT+  SA+L  K+P K+ DPGSFTIP SIGG++VG
Sbjct: 50  MPNYVKFLKDILTKKRRLGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVG 109

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGE----------------------------VNKFNFP 118
            A+C+LG SINLM + ++++LGIGE                            V+KF FP
Sbjct: 110 RALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFP 169

BLAST of Moc10g24890 vs. ExPASy TrEMBL
Match: A0A6J1DV77 (uncharacterized protein LOC111023818 OS=Momordica charantia OX=3673 GN=LOC111023818 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.7e-46
Identity = 114/210 (54.29%), Postives = 124/210 (59.05%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNY   LKDIL KKRR GEFEIVALTKE SAILT KLPQK+ DPGSFTIP+ IGGKNVG
Sbjct: 57  MPNYVKFLKDILAKKRRLGEFEIVALTKEFSAILTGKLPQKMGDPGSFTIPVLIGGKNVG 116

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGE----------------------------VNKFNFP 120
           HA+C+LG SINLM L VYQ+LGIGE                            V+KF FP
Sbjct: 117 HALCDLGASINLMPLSVYQKLGIGEARPITVTLQLADRSITYLEGKIEDVLVQVDKFIFP 176

Query: 121 VDFIILDYEADNEIPIILGWPFLST----------------------------------- 148
            DFIILDYEAD EIPIILG PFLST                                   
Sbjct: 177 ADFIILDYEADKEIPIILGRPFLSTGRALIDVHNGELTIRVNDQQVTLSIFNSIKYPIDV 236

BLAST of Moc10g24890 vs. ExPASy TrEMBL
Match: A0A6J1DX85 (uncharacterized protein LOC111025396 OS=Momordica charantia OX=3673 GN=LOC111025396 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 3.0e-40
Identity = 88/124 (70.97%), Postives = 96/124 (77.42%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNYA ILKDILTKKRRFGEFE + LTKE SAILTDKLPQKIWDP SFTIPISIGGKNV 
Sbjct: 1   MPNYAKILKDILTKKRRFGEFETITLTKEFSAILTDKLPQKIWDPESFTIPISIGGKNVS 60

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGEVNKFNFPVDFIILDYEADNEIPIILGWPFLSTEEC 120
           H +C+L V INLM L          V+KF FP DFI++DYEADNEIPIILG PFL+T   
Sbjct: 61  HDLCDLRVGINLMPL---------SVDKFIFPADFIVIDYEADNEIPIILGRPFLATSRA 115

Query: 121 SLLR 125
            + R
Sbjct: 121 LIDR 115

BLAST of Moc10g24890 vs. ExPASy TrEMBL
Match: A0A6J1DUI3 (uncharacterized protein LOC111023221 OS=Momordica charantia OX=3673 GN=LOC111023221 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 7.2e-34
Identity = 83/138 (60.14%), Postives = 92/138 (66.67%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNY   LKDIL KKR  GEF+ VALTKE SAILT+KLPQK+ DPGSFTIP+SIGGKNVG
Sbjct: 1   MPNYVKFLKDILAKKRSLGEFKTVALTKECSAILTEKLPQKMGDPGSFTIPVSIGGKNVG 60

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGE----------------------------VNKFNFP 111
           HA+C+LG SINLM L VYQ+LGI E                            V+KF FP
Sbjct: 61  HALCDLGPSINLMPLSVYQKLGIREARPTTVTLQLADRFITHPEGKIEDVLVQVDKFIFP 120

BLAST of Moc10g24890 vs. ExPASy TrEMBL
Match: A0A6J1CS22 (uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013805 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 91/227 (40.09%), Postives = 123/227 (54.19%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNY   LK+ILTKKR  GE+EIVA+TK  S ILT K+P K+ DPGSFTIP+SIGG+ +G
Sbjct: 162 MPNYVRFLKEILTKKRMLGEYEIVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQQIG 221

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGE----------------------------VNKFNFP 120
             +C++G SIN+M L +Y +LGI E                            V KF+FP
Sbjct: 222 LTLCDMGASINIMPLSIYNKLGIREARPTTVTLQLADRSITHPEGKIEDVSVQVEKFSFP 281

Query: 121 VDFIILDYEADNEIPIILGWPFLST----------------------------------- 161
            DFIILDY+A  E+PIILG PFL+T                                   
Sbjct: 282 ADFIILDYDAAKEVPIILGRPFLATGRALVDVNKGELTMHVQDQEVKFSVHNSMKFSAES 341

BLAST of Moc10g24890 vs. ExPASy TrEMBL
Match: A0A6J1GJ68 (uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC111454344 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 77/145 (53.10%), Postives = 97/145 (66.90%), Query Frame = 0

Query: 1   MPNYANILKDILTKKRRFGEFEIVALTKEHSAILTDKLPQKIWDPGSFTIPISIGGKNVG 60
           MPNY   LKD+LT +R+F EF++V+L +E SAIL +K+P K  DPGSFTIP+SIGGK +G
Sbjct: 214 MPNYVKFLKDVLTNRRKFEEFKVVSLNEECSAILKNKIPLKEKDPGSFTIPVSIGGKELG 273

Query: 61  HAVCNLGVSINLMSLLVYQRLGIGE----------------------------VNKFNFP 118
            A+C+LG SINLM L +Y++LGIGE                            V+KF FP
Sbjct: 274 RALCDLGASINLMPLSIYKKLGIGEARPTTVTLQLADRSITYPEGKIEDILIQVDKFIFP 333

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156989.17.6e-4654.29uncharacterized protein LOC111023818 [Momordica charantia][more]
XP_022158940.16.3e-4070.97uncharacterized protein LOC111025396 [Momordica charantia][more]
XP_030509265.11.6e-3544.61uncharacterized protein LOC115723943 [Cannabis sativa][more]
XP_024989151.12.3e-3455.17uncharacterized protein LOC112523699 [Cynara cardunculus var. scolymus][more]
XP_030478287.15.1e-3455.17uncharacterized protein LOC115695357 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DV773.7e-4654.29uncharacterized protein LOC111023818 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DX853.0e-4070.97uncharacterized protein LOC111025396 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DUI37.2e-3460.14uncharacterized protein LOC111023221 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CS221.6e-3340.09uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1GJ682.1e-3353.10uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC1114543... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..146
NoneNo IPR availablePANTHERPTHR33067:SF23SUBFAMILY NOT NAMEDcoord: 86..119
NoneNo IPR availablePANTHERPTHR33067:SF23SUBFAMILY NOT NAMEDcoord: 4..86
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 86..119
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 4..86
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 25..88
e-value: 1.0E-5
score: 27.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g24890.1Moc10g24890.1mRNA