Moc10g24880 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g24880
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr10: 17874308 .. 17875536 (-)
RNA-Seq Expression	Moc10g24880
Synteny	Moc10g24880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGTACTTGACTGCCGTCAGTATTGCCACAATCCGAGGTGAGCAGAAAGCCTCGAGAGAGTGCTGTGCTACTGCATTCAAAAGGATGGTAGCATGCACAGCCATCCTCGAAAAGGCTCGGCCTCAAGTGAAGATGAGCTGATGAACCCCCACAGAAGAGCTAGAGCTTGTGCCCTTCTTGAGCCCAGACAATCAAGTTAGCATCAGCACCAATCTGTGCACCGAGACGAGGAAAGAGCTGATTACTTCTTACAAGTCAATGCCGACGTGTTCGCCTAGTCGAACGAAAACATGTCAGGGATCAACTTGAACATCATGGTACATAGGGCTTAGTGTAGATCCCTCTTTCGACCTTTAAAGAAAAAATGTAAGCCTATCAATGTTGAACGTAATCTTGTAATAAGTAGGGAAGTTGATAAGCTCTTACGAGCTAACTTTATAAAAAAAGTCCATTACCCCACGCGACTCTCTAATGTTGTTTTAAGCTGATAAGCTCAGCTCTCACTAAAGAAGACGAAGGACGTCAAACCTCATCTACTATACCAGTAAGTTAATGACTGATGTCGATACGAGATATCTTTGCATTGAGAAGCTCGCTTTAGCCTTAGTAACCTTGACTCAAAGGTTACGATGTACTTCTAGGCTCATCATGTCACAGTCCTGACAAATTTTTCATTAAGGCAAGTTTTCCACAAGCTTGAAACTTTGGGAAGGCTCATGTAGTGGGCCTTAAAGGGTCAGGTCGTAGCTGATTTCATCATCGAGCTGACCCCATATCGACAGGGGGCCGACGCTTAGGATCAGTAGATCCTATATGTAGACGACTCATCCAACGAGAAGGATTGCAGTGCTGGAATGCTCCTCATCAAAGTTTAATACGAAACCCTACTAGTAGAATTTTGAGTGGCACGAGGGATGAGAGTTAACCACCTCCTCATCCTAAGCTACTTGCAGCTTATTGTGAATCAAATCACAGAAGAATACCAAGTGAAGGACAATTACATGGAAAGGTAATTGAACGAGGCTCTTGAGCTCTTCAACCAGTTCAAAGAGTACGTTATGTGTCAGGTGCCTCGTTCAGAAAATTCCAATGCTTATGCATTAGCTCGCCTAGCCTCAGCTTATGAAACTGACCTTCTACGGTCAATTCCGGTAGAAGTTCCGACTGAGCCCTCCATCGACCAAGTTGAGGGGATGGATATGCAACCTAGCACACCAACTTAG

mRNA sequence

ATGATGAAGTACTTGACTGCCGTCAGTATTGCCACAATCCGAGGTGAGCAGAAAGCCTCGAGAGAGTGCTGTGCTACTGCATTCAAAAGGATGGTAGCATGCACAGCCATCCTCGAAAAGGCTCGGCCTCAAGTGCCTCGTTCAGAAAATTCCAATGCTTATGCATTAGCTCGCCTAGCCTCAGCTTATGAAACTGACCTTCTACGGTCAATTCCGGTAGAAGTTCCGACTGAGCCCTCCATCGACCAAGTTGAGGGGATGGATATGCAACCTAGCACACCAACTTAG

Coding sequence (CDS)

ATGATGAAGTACTTGACTGCCGTCAGTATTGCCACAATCCGAGGTGAGCAGAAAGCCTCGAGAGAGTGCTGTGCTACTGCATTCAAAAGGATGGTAGCATGCACAGCCATCCTCGAAAAGGCTCGGCCTCAAGTGCCTCGTTCAGAAAATTCCAATGCTTATGCATTAGCTCGCCTAGCCTCAGCTTATGAAACTGACCTTCTACGGTCAATTCCGGTAGAAGTTCCGACTGAGCCCTCCATCGACCAAGTTGAGGGGATGGATATGCAACCTAGCACACCAACTTAG

Protein sequence

MMKYLTAVSIATIRGEQKASRECCATAFKRMVACTAILEKARPQVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT

Homology

[Close]

BLAST of Moc10g24880 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           QVPRSENSNA  LARLASAY+TDL R++PVE+ TE S+DQ E M++  + PT
Sbjct: 416 QVPRSENSNADVLARLASAYDTDLPRTVPVEILTESSVDQPELMEITSAQPT 467

[Close]

BLAST of Moc10g24880 vs. NCBI nr
Match: XP_022158215.1 (uncharacterized protein LOC111024751 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 4.9e-07
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           +VPRSENSNA ALA LASAYETDL R++PVE+  E SIDQ E MD+  + PT
Sbjct: 360 EVPRSENSNADALALLASAYETDLPRTVPVEILVESSIDQPEIMDITSARPT 411

[Close]

BLAST of Moc10g24880 vs. NCBI nr
Match: XP_022156792.1 (uncharacterized protein LOC111023626 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-07
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           QVPRS+NSNA ALARLASAYETDL R++PVE+  E SIDQ E +++  + PT
Sbjct: 306 QVPRSKNSNADALARLASAYETDLPRTVPVEILAESSIDQPEIIEITSAQPT 357

[Close]

BLAST of Moc10g24880 vs. NCBI nr
Match: XP_022149985.1 (uncharacterized protein LOC111018267 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           Q+PRSENSNA ALA+LASAYETD+ RS+PVE+   PSI + + MD+  S P+
Sbjct: 515 QIPRSENSNADALAKLASAYETDIARSVPVEILDNPSILEPDVMDVDTSAPS 566

[Close]

BLAST of Moc10g24880 vs. NCBI nr
Match: XP_022149378.1 (uncharacterized protein LOC111017809 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-06
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           QVPRSENSNA ALA+LASAYETDL RS+PVE+   PSI + + M++   TP+
Sbjct: 219 QVPRSENSNADALAKLASAYETDLARSVPVEILDNPSILEPDLMEVDTPTPS 270

[Close]

BLAST of Moc10g24880 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           QVPRSENSNA  LARLASAY+TDL R++PVE+ TE S+DQ E M++  + PT
Sbjct: 416 QVPRSENSNADVLARLASAYDTDLPRTVPVEILTESSVDQPELMEITSAQPT 467

[Close]

BLAST of Moc10g24880 vs. ExPASy TrEMBL
Match: A0A6J1DV78 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024751 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           +VPRSENSNA ALA LASAYETDL R++PVE+  E SIDQ E MD+  + PT
Sbjct: 360 EVPRSENSNADALALLASAYETDLPRTVPVEILVESSIDQPEIMDITSARPT 411

[Close]

BLAST of Moc10g24880 vs. ExPASy TrEMBL
Match: A0A6J1DSX0 (uncharacterized protein LOC111023626 OS=Momordica charantia OX=3673 GN=LOC111023626 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           QVPRS+NSNA ALARLASAYETDL R++PVE+  E SIDQ E +++  + PT
Sbjct: 306 QVPRSKNSNADALARLASAYETDLPRTVPVEILAESSIDQPEIIEITSAQPT 357

[Close]

BLAST of Moc10g24880 vs. ExPASy TrEMBL
Match: A0A6J1D787 (uncharacterized protein LOC111018267 OS=Momordica charantia OX=3673 GN=LOC111018267 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-07
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           Q+PRSENSNA ALA+LASAYETD+ RS+PVE+   PSI + + MD+  S P+
Sbjct: 515 QIPRSENSNADALAKLASAYETDIARSVPVEILDNPSILEPDVMDVDTSAPS 566

[Close]

BLAST of Moc10g24880 vs. ExPASy TrEMBL
Match: A0A6J1D6M1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.1e-07
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 44  QVPRSENSNAYALARLASAYETDLLRSIPVEVPTEPSIDQVEGMDMQPSTPT 96
           QVPRSENSNA ALA+LASAYETDL RS+PVE+   PSI + + M++   TP+
Sbjct: 219 QVPRSENSNADALAKLASAYETDLARSVPVEILDNPSILEPDLMEVDTPTPS 270

The following BLAST results are available for this feature:

BLAST of Moc10g24880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156986.1	2.2e-07	65.38	uncharacterized protein LOC111023816 [Momordica charantia]	[more]
XP_022158215.1	4.9e-07	67.31	uncharacterized protein LOC111024751 [Momordica charantia]	[more]
XP_022156792.1	8.4e-07	65.38	uncharacterized protein LOC111023626 [Momordica charantia]	[more]
XP_022149985.1	1.1e-06	61.54	uncharacterized protein LOC111018267 [Momordica charantia]	[more]
XP_022149378.1	1.9e-06	63.46	uncharacterized protein LOC111017809 [Momordica charantia]	[more]

BLAST of Moc10g24880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g24880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWM2	1.1e-07	65.38	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1	[more]
A0A6J1DV78	2.4e-07	67.31	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024751 PE=4 SV=1	[more]
A0A6J1DSX0	4.1e-07	65.38	uncharacterized protein LOC111023626 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1D787	5.3e-07	61.54	uncharacterized protein LOC111018267 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1D6M1	9.1e-07	63.46	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111017809 PE=4 SV=1	[more]

BLAST of Moc10g24880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g24880.1	Moc10g24880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity