Moc10g23970 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g23970
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr10: 17207893 .. 17208620 (-)
RNA-Seq Expression	Moc10g23970
Synteny	Moc10g23970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGATAGAAAGATTTAACAGCATGCTCAAGGAATACTTGCGTCACTTTGTCTATTCCAAACAAAGAAATTGGGTCTAGTTGTTAGATGTGGCTCAATTTTGCTTTAACAGCCAGACAAGCTCATCAACAGGGAAGAGCCCCTTCGAGATTGTATGTGGCAGACAATCGTCTATGCCACATATCATTAACTACCCATACGCTGGGAAGAGTCCTCAAGCCCACAATCTCCCAAAGGAATGGAAGCAAATGATAGAGATTGCTTGAGCGTATTTGGAAAACGCTTACAAGCACGTGAAGAAATGGGCAGATCGCAAGCGTCGCCCCCTTGAATTTTAAGCGGATGACAAAGTTCTCATCAAGTTGAGGCCAGAATAGATTCATTTATGGAGACGCAAAGATCAAAGACTCGTGAGAAAATAAGAAGGACCCGTGGAAGTTTTGAAGAAGGCAGGGAATGTCTCGTATAAGGTGTTGTTACCAGCCTGGATGAAGATCCACCCGGTAATCCATGTGAGCAACTTAAAACCTTATCACCTCGATCCTAAGGATGACGAACACAATGTTGTAGTGTGGCCGGCCATCGACCTAAAGCTTAAGGACGACAAGGAAGCAGAAGAGATCCTTGCAGAGAGAGTCAGAAAGGTGGGAAGACCTGTTCGCAAAGTTCAAGAATTCCTCATCAAATGGAAGGACTTACCTTATGCAGAAATCAGCTGGGAGTGA

mRNA sequence

ATGCCAGACAAGCTCATCAACAGGGAAGAGCCCCTTCGAGATTCCTGGATGAAGATCCACCCGGTAATCCATGTGAGCAACTTAAAACCTTATCACCTCGATCCTAAGGATGACGAACACAATGTTGTAGTGTGGCCGGCCATCGACCTAAAGCTTAAGGACGACAAGGAAGCAGAAGAGATCCTTGCAGAGAGAGTCAGAAAGGTGGGAAGACCTGTTCGCAAAGTTCAAGAATTCCTCATCAAATGGAAGGACTTACCTTATGCAGAAATCAGCTGGGAGTGA

Coding sequence (CDS)

ATGCCAGACAAGCTCATCAACAGGGAAGAGCCCCTTCGAGATTCCTGGATGAAGATCCACCCGGTAATCCATGTGAGCAACTTAAAACCTTATCACCTCGATCCTAAGGATGACGAACACAATGTTGTAGTGTGGCCGGCCATCGACCTAAAGCTTAAGGACGACAAGGAAGCAGAAGAGATCCTTGCAGAGAGAGTCAGAAAGGTGGGAAGACCTGTTCGCAAAGTTCAAGAATTCCTCATCAAATGGAAGGACTTACCTTATGCAGAAATCAGCTGGGAGTGA

Protein sequence

MPDKLINREEPLRDSWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVRKVQEFLIKWKDLPYAEISWE

Homology

[Close]

BLAST of Moc10g23970 vs. NCBI nr
Match: KAA0053507.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 5.4e-22
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 15  SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
           +WMKI+PVIHVSNLKPYH D +D + N+V  P IDL  K+DK+ EEILAERVR+  RP R
Sbjct: 511 TWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPVIDLSQKEDKDVEEILAERVRRGRRPAR 570

Query: 75  KVQEFLIKWKDLPYAEISWE 95
           ++ E+L+KWK+LP  EISWE
Sbjct: 571 RIHEYLVKWKNLPVEEISWE 590

[Close]

BLAST of Moc10g23970 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 7.0e-22
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 15   SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
            +WMKI+PVIHVSNLKPYH D +D + NVV  P IDL  K+DK+ EEILAERVRK  RP R
Sbjct: 1482 TWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPIIDLSQKEDKDVEEILAERVRKSRRPAR 1541

Query: 75   KVQEFLIKWKDLPYAEISWE 95
            ++ E+L+KWK+LP  E SWE
Sbjct: 1542 RIHEYLVKWKNLPVEETSWE 1561

[Close]

BLAST of Moc10g23970 vs. NCBI nr
Match: KAA0032476.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 15  SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
           +WMKI+PVIHVSNLKPYH D +D + NVV  P IDL  K+DK+ EEILAERVR+  RP R
Sbjct: 64  TWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPAR 123

Query: 75  KVQEFLIKWKDLPYAEISWE 95
           ++ E+L+KWK+LP  E SWE
Sbjct: 124 RIHEYLVKWKNLPVEETSWE 143

[Close]

BLAST of Moc10g23970 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 15   SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
            +WMKI+PVIHVSNLKPYH D +D + NVV  P IDL  K+DK+ EEILAERVR+  RP R
Sbjct: 1478 TWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPAR 1537

Query: 75   KVQEFLIKWKDLPYAEISWE 95
            ++ E+L+KWK+LP  E SWE
Sbjct: 1538 RIHEYLVKWKNLPVEETSWE 1557

[Close]

BLAST of Moc10g23970 vs. NCBI nr
Match: TYK19637.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK28777.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 15  SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
           +WMKI+PVIHVSNLKPYH D +D + NVV  P IDL  K+DK+ EEILAERVR+  RP R
Sbjct: 154 TWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPAR 213

Query: 75  KVQEFLIKWKDLPYAEISWE 95
           ++ E+L+KWK+LP  E SWE
Sbjct: 214 RIHEYLVKWKNLPVEETSWE 233

[Close]

BLAST of Moc10g23970 vs. ExPASy TrEMBL
Match: A0A5A7UG93 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00640 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.6e-22
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 15  SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
           +WMKI+PVIHVSNLKPYH D +D + N+V  P IDL  K+DK+ EEILAERVR+  RP R
Sbjct: 511 TWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPVIDLSQKEDKDVEEILAERVRRGRRPAR 570

Query: 75  KVQEFLIKWKDLPYAEISWE 95
           ++ E+L+KWK+LP  EISWE
Sbjct: 571 RIHEYLVKWKNLPVEEISWE 590

[Close]

BLAST of Moc10g23970 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.4e-22
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 15   SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
            +WMKI+PVIHVSNLKPYH D +D + NVV  P IDL  K+DK+ EEILAERVRK  RP R
Sbjct: 1482 TWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPIIDLSQKEDKDVEEILAERVRKSRRPAR 1541

Query: 75   KVQEFLIKWKDLPYAEISWE 95
            ++ E+L+KWK+LP  E SWE
Sbjct: 1542 RIHEYLVKWKNLPVEETSWE 1561

[Close]

BLAST of Moc10g23970 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 15   SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
            +WMKI+PVIHVSNLKPYH D +D + NVV  P IDL  K+DK+ EEILAERVR+  RP R
Sbjct: 1482 TWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPAR 1541

Query: 75   KVQEFLIKWKDLPYAEISWE 95
            ++ E+L+KWK+LP  E SWE
Sbjct: 1542 RIHEYLVKWKNLPVEETSWE 1561

[Close]

BLAST of Moc10g23970 vs. ExPASy TrEMBL
Match: A0A5D3DBE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00240 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 15  SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
           +WMKI+PVIHVSNLKPYH D +D + NVV  P IDL  K+DK+ EEILAERVR+  RP R
Sbjct: 154 TWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPAR 213

Query: 75  KVQEFLIKWKDLPYAEISWE 95
           ++ E+L+KWK+LP  E SWE
Sbjct: 214 RIHEYLVKWKNLPVEETSWE 233

[Close]

BLAST of Moc10g23970 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 15   SWMKIHPVIHVSNLKPYHLDPKDDEHNVVVWPAIDLKLKDDKEAEEILAERVRKVGRPVR 74
            +WMKI+PVIHVSNLKPYH D +D + NVV  P IDL  K+DK+ EEILAERVR+  RP R
Sbjct: 1482 TWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPAR 1541

Query: 75   KVQEFLIKWKDLPYAEISWE 95
            ++ E+L+KWK+LP  E SWE
Sbjct: 1542 RIHEYLVKWKNLPVEETSWE 1561

The following BLAST results are available for this feature:

BLAST of Moc10g23970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053507.1	5.4e-22	63.75	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	7.0e-22	65.00	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032476.1	1.6e-21	63.75	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	1.6e-21	63.75	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19637.1	1.6e-21	63.75	reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcripta...	[more]

BLAST of Moc10g23970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g23970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UG93	2.6e-22	63.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19...	[more]
A0A5A7SUK4	3.4e-22	65.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]
A0A5D3C4R1	7.6e-22	63.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3DBE0	7.6e-22	63.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]
A0A5A7UXR6	7.6e-22	63.75	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of Moc10g23970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 57..94 e-value: 4.9E-8 score: 32.8
None	No IPR available	GENE3D	2.40.50.40		coord: 6..94 e-value: 4.7E-8 score: 34.7
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 56..94 score: 11.580101
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 17..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g23970.1	Moc10g23970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding