Moc10g16010 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g16010
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionProtein FAR1-RELATED SEQUENCE 5-like
Locationchr10: 12116353 .. 12117192 (+)
RNA-Seq ExpressionMoc10g16010
SyntenyMoc10g16010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGATCTACAAGAATTGGAATATCTACTTGACAACGAGATAGAGCAAACTTTTCATCGCAAAAGAAGAGCACAACGTAGACAGCAAGAAGAAATTGGCCTTATGAATCAACTACTGAGAAATCCTAACCATGTGGTTCCCAATCCAGAAGTTGAAGGAATTAATAGAGGAGTGGTGGTTGTACCAACTGTTCCTCCTCTTAATGCCATTATGCTGGCTGATGATGGAGAAATGGCAATTAGAGTCTATGCTGCTCCTACATTTCATGGTTTTCATCTGGTTATTGCAGAACCAGAAATAGAGGCTGAAACGTTTGAGTTGAAACCTGTCATGTTCCAAATGCTCCAAACGGTGGGGCAGTTTCATGAGCATGCGTCTAAGGACCCCCACTAATACTTGAGGTACTTTTTAGAAGTAGGTGATTCATTTAAAATGCTAGGGGTATCTAAAGAAGCATTGAGGTTGAAGCGGTTTCCTTACTCACTAAGAGATGAGGCTAGAAACTGGTTGAACTCTCTACCAGCTGAATCAATTACTTCTTGGAATGATCTTGCTAAAAAATTCTTGATGAAGTATTTGAAGGGATGTGAATCCCGGAGCGGAAACGGATTTTCGTTGCTGATTTTCGGGATACAAAACCAAATTTTAAAGAAGAAAAATACAGAGAAAACTTTACCTTTGAAGAACGTTTCTTCAACTAGTTTTCCTCGAACACCACCACTATTTCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTGGTGGGAGCAATCCTTTGGAACGAGAGGGAGAGATTGAGAGCCCTTTGAGAGAAAATGATGGGAGAGTTCCTTAG

mRNA sequence

ATGCACGATCTACAAGAATTGGAATATCTACTTGACAACGAGATAGAGCAAACTTTTCATCGCAAAAGAAGAGCACAACGTAGACAGCAAGAAGAAATTGGCCTTATGAATCAACTACTGAGAAATCCTAACCATGTGGTTCCCAATCCAGAAGTTGAAGGAATTAATAGAGGAGTGGTGGTTGTACCAACTGTTCCTCCTCTTAATGCCATTATGCTGGCTGATGATGGAGAAATGGCAATTAGAGTCTATGCTGCTCCTACATTTCATGGTTTTCATCTGGTTATTGCAGAACCAGAAATAGAGGCTGAAACGTACTTTTTAGAAGTAGGTGATTCATTTAAAATGCTAGGGGTATCTAAAGAAGCATTGAGGTTGAAGCGGTTTCCTTACTCACTAAGAGATGAGGCTAGAAACTGGTTGAACTCTCTACCAGCTGAATCAATTACTTCTTGGAATGATCTTGCTAAAAAATTCTTGATGAAGTATTTGAAGGGATGTGAATCCCGGAGCGGAAACGGATTTTCGTTGCTGATTTTCGGGATACAAAACCAAATTTTAAAGAAGAAAAATACAGAGAAAACTTTACCTTTGAAGAACGTTTCTTCAACTAGTTTTCCTCGAACACCACCACTATTTCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTGGTGGGAGCAATCCTTTGGAACGAGAGGGAGAGATTGAGAGCCCTTTGAGAGAAAATGATGGGAGAGTTCCTTAG

Coding sequence (CDS)

ATGCACGATCTACAAGAATTGGAATATCTACTTGACAACGAGATAGAGCAAACTTTTCATCGCAAAAGAAGAGCACAACGTAGACAGCAAGAAGAAATTGGCCTTATGAATCAACTACTGAGAAATCCTAACCATGTGGTTCCCAATCCAGAAGTTGAAGGAATTAATAGAGGAGTGGTGGTTGTACCAACTGTTCCTCCTCTTAATGCCATTATGCTGGCTGATGATGGAGAAATGGCAATTAGAGTCTATGCTGCTCCTACATTTCATGGTTTTCATCTGGTTATTGCAGAACCAGAAATAGAGGCTGAAACGTACTTTTTAGAAGTAGGTGATTCATTTAAAATGCTAGGGGTATCTAAAGAAGCATTGAGGTTGAAGCGGTTTCCTTACTCACTAAGAGATGAGGCTAGAAACTGGTTGAACTCTCTACCAGCTGAATCAATTACTTCTTGGAATGATCTTGCTAAAAAATTCTTGATGAAGTATTTGAAGGGATGTGAATCCCGGAGCGGAAACGGATTTTCGTTGCTGATTTTCGGGATACAAAACCAAATTTTAAAGAAGAAAAATACAGAGAAAACTTTACCTTTGAAGAACGTTTCTTCAACTAGTTTTCCTCGAACACCACCACTATTTCTTCCTCGCTATCCTCTTGGGTCTCGGGATCGTGCTGGTGGGAGCAATCCTTTGGAACGAGAGGGAGAGATTGAGAGCCCTTTGAGAGAAAATGATGGGAGAGTTCCTTAG

Protein sequence

MHDLQELEYLLDNEIEQTFHRKRRAQRRQQEEIGLMNQLLRNPNHVVPNPEVEGINRGVVVVPTVPPLNAIMLADDGEMAIRVYAAPTFHGFHLVIAEPEIEAETYFLEVGDSFKMLGVSKEALRLKRFPYSLRDEARNWLNSLPAESITSWNDLAKKFLMKYLKGCESRSGNGFSLLIFGIQNQILKKKNTEKTLPLKNVSSTSFPRTPPLFLPRYPLGSRDRAGGSNPLEREGEIESPLRENDGRVP
Homology
BLAST of Moc10g16010 vs. NCBI nr
Match: XP_022158490.1 (uncharacterized protein LOC111024970 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-32
Identity = 105/261 (40.23%), Postives = 125/261 (47.89%), Query Frame = 0

Query: 36  MNQLLRNPNHVVPNPEVEGINRG-VVVVPTVPPLNAIMLADDGEMAIRVYAAPTFHGFHL 95
           M+QL R     +PNP VEGIN G VVV+   PPLN I+L DDGE  IR YAAP  HGFH 
Sbjct: 1   MDQLPR-----LPNPVVEGINEGEVVVLAAAPPLNVILLVDDGERVIRAYAAPAIHGFHP 60

Query: 96  VIAEPEIEAE------------------------------TYFLEVGDSFKMLGVSKEAL 155
           VIA P IEAE                               YFLEV DSF M  VSKEAL
Sbjct: 61  VIAGPAIEAERFELKSIMFQMLQTVGQFFGNPSEDPHLHLRYFLEVSDSFNMQEVSKEAL 120

Query: 156 RLKRFPYSLRDEARNWLNSLPAESITSWNDLAKKFLMKYL---KGCESRS---------G 215
           RLK FPY L D+ R+WLNS+PAESITSWNDLA+KF  +     + C+S S          
Sbjct: 121 RLKLFPYLLSDKTRDWLNSMPAESITSWNDLAEKFFNEIFSPKQECQSDSKAVNERNNHE 180

Query: 216 NGFSLLIFGIQNQILKKKNTEKTLPLKNVSSTS---------------------FPRTPP 233
              +  +  + +QI    N  K +     SS S                       + P 
Sbjct: 181 ANDNEAMAALNDQIANLTNMVKNMNTATTSSNSPGLGRKLREPVNQNTSQYQQKVAQQPG 240

BLAST of Moc10g16010 vs. NCBI nr
Match: XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])

HSP 1 Score: 112.1 bits (279), Expect = 7.1e-21
Identity = 72/183 (39.34%), Postives = 96/183 (52.46%), Query Frame = 0

Query: 11  LDNEIEQTFHRKRRAQRRQQEEIGLMNQLLRNPNHVVPNPEVEGINRGVVVVPTVPPLNA 70
           +D EIE+TF ++R+ Q+ ++              ++    EV G++            N 
Sbjct: 13  IDPEIERTFRQRRKEQKAKKR------------CNMADGFEVGGVHN---------EANP 72

Query: 71  IMLADDGEMAIRVYAAPTFHGFHLVIAEPEIEAETY------------------------ 130
           I LADD   AIR YAAP F+  +  I  PEI+A  +                        
Sbjct: 73  IALADDRARAIREYAAPMFNELNPGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTEDP 132

Query: 131 ------FLEVGDSFKMLGVSKEALRLKRFPYSLRDEARNWLNSLPAESITSWNDLAKKFL 164
                 FLEV DSFK+ GVS+EALRLK FP+SLRD AR WLN+LP +S+T+WNDLA+KFL
Sbjct: 133 HLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNWNDLAEKFL 174

BLAST of Moc10g16010 vs. NCBI nr
Match: XP_017233063.1 (PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus])

HSP 1 Score: 111.7 bits (278), Expect = 9.2e-21
Identity = 71/185 (38.38%), Postives = 97/185 (52.43%), Query Frame = 0

Query: 9   YLLDNEIEQTFHRKRRAQRRQQEEIGLMNQLLRNPNHVVPNPEVEGINRGVVVVPTVPPL 68
           +  D EIE+TF+R+R+AQR+ ++      Q+  + N  V N ++  + RG  +V      
Sbjct: 9   FAFDPEIERTFNRRRKAQRKIKQ-----TQVAMDDN--VNNGDIPIVPRGAFIV------ 68

Query: 69  NAIMLADDGEMAIRVYAAPTFHGFHLVIAEPEIEAETY---------------------- 128
                 DD + AIR YAAP F   +  I  P I+A  +                      
Sbjct: 69  ------DDKDRAIRQYAAPRFEELNSGIIRPNIQATQFELKPVMFQMLQTIGQFSGMPTE 128

Query: 129 --------FLEVGDSFKMLGVSKEALRLKRFPYSLRDEARNWLNSLPAESITSWNDLAKK 164
                   F+E+ DSFK  GV ++ALRLK FPYS+RD AR WLNSLPA S+T+WNDL +K
Sbjct: 129 DPHLHLRLFMEISDSFKFQGVPEDALRLKLFPYSVRDRARTWLNSLPAGSVTTWNDLTEK 174

BLAST of Moc10g16010 vs. NCBI nr
Match: XP_017239618.1 (PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus])

HSP 1 Score: 111.7 bits (278), Expect = 9.2e-21
Identity = 72/193 (37.31%), Postives = 98/193 (50.78%), Query Frame = 0

Query: 1   MHDLQELEYLLDNEIEQTFHRKRRAQRRQQEEIGLMNQLLRNPNHVVPNPEVEGINRGVV 60
           M +   + +  D EIE+TF+R+R+AQR+ ++    M                + IN G  
Sbjct: 1   MSERHPVVFGFDPEIERTFNRRRKAQRKIKQTQVAMG---------------DNINNG-- 60

Query: 61  VVPTVPPLNAIMLADDGEMAIRVYAAPTFHGFHLVIAEPEIEAETY-------------- 120
            +P VP      + DD + AIR YAAP F   +  I  P+I+A  +              
Sbjct: 61  DIPVVPA--GAFIVDDKDRAIRQYAAPCFEELNSGIIRPDIQATQFELKPVMFQMLQTIG 120

Query: 121 ----------------FLEVGDSFKMLGVSKEALRLKRFPYSLRDEARNWLNSLPAESIT 164
                           F+E+ DSFK  GV ++ALRLK FPYS+RD AR WLNSLPA S+T
Sbjct: 121 QFSGMPTEDPHLHLRLFMEISDSFKFQGVPEDALRLKLFPYSVRDRARTWLNSLPAGSVT 174

BLAST of Moc10g16010 vs. NCBI nr
Match: XP_030478162.1 (uncharacterized protein LOC115695219 [Cannabis sativa])

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-20
Identity = 61/125 (48.80%), Postives = 74/125 (59.20%), Query Frame = 0

Query: 69  NAIMLADDGEMAIRVYAAPTFHGFHLVIAEPEIEAETY---------------------- 128
           N I LADD   AIR YAAP F+  +L I  P+I+A  +                      
Sbjct: 15  NPIALADDRAQAIREYAAPMFNELNLGIVRPKIQAPHFELKPIMFQMLQTVGQFGGSPTE 74

Query: 129 --------FLEVGDSFKMLGVSKEALRLKRFPYSLRDEARNWLNSLPAESITSWNDLAKK 164
                   FLEV DSFK+ GVS+EALRLK FP+SLRD AR WLN+LP +S+T+WN+LAKK
Sbjct: 75  DPHLHIHPFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNWNNLAKK 134

BLAST of Moc10g16010 vs. ExPASy TrEMBL
Match: A0A6J1DVZ9 (uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024970 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 105/261 (40.23%), Postives = 125/261 (47.89%), Query Frame = 0

Query: 36  MNQLLRNPNHVVPNPEVEGINRG-VVVVPTVPPLNAIMLADDGEMAIRVYAAPTFHGFHL 95
           M+QL R     +PNP VEGIN G VVV+   PPLN I+L DDGE  IR YAAP  HGFH 
Sbjct: 1   MDQLPR-----LPNPVVEGINEGEVVVLAAAPPLNVILLVDDGERVIRAYAAPAIHGFHP 60

Query: 96  VIAEPEIEAE------------------------------TYFLEVGDSFKMLGVSKEAL 155
           VIA P IEAE                               YFLEV DSF M  VSKEAL
Sbjct: 61  VIAGPAIEAERFELKSIMFQMLQTVGQFFGNPSEDPHLHLRYFLEVSDSFNMQEVSKEAL 120

Query: 156 RLKRFPYSLRDEARNWLNSLPAESITSWNDLAKKFLMKYL---KGCESRS---------G 215
           RLK FPY L D+ R+WLNS+PAESITSWNDLA+KF  +     + C+S S          
Sbjct: 121 RLKLFPYLLSDKTRDWLNSMPAESITSWNDLAEKFFNEIFSPKQECQSDSKAVNERNNHE 180

Query: 216 NGFSLLIFGIQNQILKKKNTEKTLPLKNVSSTS---------------------FPRTPP 233
              +  +  + +QI    N  K +     SS S                       + P 
Sbjct: 181 ANDNEAMAALNDQIANLTNMVKNMNTATTSSNSPGLGRKLREPVNQNTSQYQQKVAQQPG 240

BLAST of Moc10g16010 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.6e-21
Identity = 60/126 (47.62%), Postives = 75/126 (59.52%), Query Frame = 0

Query: 68  LNAIMLADDGEMAIRVYAAPTFHGFHLVIAEPEIEAETY--------------------- 127
           +N I+LADD   AIR YAAP F+  +  I  PEI+A  +                     
Sbjct: 10  VNPIILADDRARAIREYAAPMFNELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPT 69

Query: 128 ---------FLEVGDSFKMLGVSKEALRLKRFPYSLRDEARNWLNSLPAESITSWNDLAK 164
                    FLEV DSFK+ GVS+E LRLK FP+SLRD AR+WLN+LP +S+T+WNDLA+
Sbjct: 70  EDPHLHLRSFLEVSDSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWNDLAE 129

BLAST of Moc10g16010 vs. ExPASy TrEMBL
Match: A0A6J1DAK9 (uncharacterized protein LOC111018910 OS=Momordica charantia OX=3673 GN=LOC111018910 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.7e-20
Identity = 66/129 (51.16%), Postives = 81/129 (62.79%), Query Frame = 0

Query: 42  NPN---HVVPNPEVEGINRGVVVVPT----VPPLNAIMLADDGEMAIRVYAAPTFHGFHL 101
           NPN    + PN  +E I  GV V       VP LN ++LA   +  IR YAAPTF+ F+ 
Sbjct: 5   NPNLHQPIPPNVRIEEIVDGVPVATNHEVIVPSLNVVLLAKAIDREIRAYAAPTFYNFNP 64

Query: 102 VIAEPEIEAETYFLEVGDSFKMLGVSKEALRLKRFPYSLRDEARNWLNSLPAESITSWND 161
           VI E EI A  + L+  +     G +KE LRLK F +SLRDEAR WL SLP+ESITSW+D
Sbjct: 65  VITEREITAPKFELKSDE-----GYNKEVLRLKLFTHSLRDEARTWLMSLPSESITSWDD 124

Query: 162 LAKKFLMKY 164
           LA+ FLMKY
Sbjct: 125 LAEIFLMKY 128

BLAST of Moc10g16010 vs. ExPASy TrEMBL
Match: A0A6J1DI54 (probable serine/threonine-protein kinase PBL11 OS=Momordica charantia OX=3673 GN=LOC111020716 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-19
Identity = 66/109 (60.55%), Postives = 72/109 (66.06%), Query Frame = 0

Query: 1   MHDLQELEYLLDNEIEQTFHRKRRAQRRQQEEIGLMNQLLRNPNHVVPNPEVEGINRGVV 60
           MHDLQ LEYLLDNEIE TF R+ R QRRQQ E   M+QL R     +PNP VE     VV
Sbjct: 1   MHDLQRLEYLLDNEIECTFPRRIREQRRQQVETNPMDQLPR-----LPNPMVE-----VV 60

Query: 61  VVPTVPPLNAIMLADDGEMAIRVYAAPTFHGFHLVIAEPEIEAETYFLE 110
           V    P LN I+LADDGE AIR YAA   H FH VIA PEIEAE + L+
Sbjct: 61  VPAAAPTLNTILLADDGERAIRAYAALVLHSFHPVIAGPEIEAERFELK 99

BLAST of Moc10g16010 vs. ExPASy TrEMBL
Match: W9RHB3 (Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN=L484_000983 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 72/193 (37.31%), Postives = 95/193 (49.22%), Query Frame = 0

Query: 4    LQELE-YLLDNEIEQTFHRKRRAQRRQQEEIGLMNQLLRNPNHVVPNPEVEGI--NRGVV 63
            +QE E +L D EIE+T  R+RR QR      G  +         +   + +GI  N+G  
Sbjct: 1339 MQEPELFLPDPEIERTLRRRRREQR------GFAH------IQEMAEEDAQGILLNQG-Q 1398

Query: 64   VVPTVPPLNAIMLADDGEMAIRVYAAPTFHGFHLVIAEPEIEAETY-------------- 123
             +  + P     + DD + AIR +A P   G + VI  P IEA  +              
Sbjct: 1399 QLNALEPAQRPFVVDDRDRAIRDFAVPVLDGLNPVIVRPNIEAPHFELKPVMFQMLQIVG 1458

Query: 124  ----------------FLEVGDSFKMLGVSKEALRLKRFPYSLRDEARNWLNSLPAESIT 164
                            F+EV D FK+ GV  E LRL  FP+SLRD AR W NSLPA+SI 
Sbjct: 1459 QFSGMATDDPHQHLRLFMEVSDIFKLPGVPSETLRLTLFPFSLRDRARAWFNSLPADSII 1518

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158490.14.0e-3240.23uncharacterized protein LOC111024970 [Momordica charantia][more]
XP_030508936.17.1e-2139.34uncharacterized protein LOC115723589 [Cannabis sativa][more]
XP_017233063.19.2e-2138.38PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus][more]
XP_017239618.19.2e-2137.31PREDICTED: uncharacterized protein LOC108212402 [Daucus carota subsp. sativus][more]
XP_030478162.11.6e-2048.80uncharacterized protein LOC115695219 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DVZ91.9e-3240.23uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
U5CUI27.6e-2147.62Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A6J1DAK91.7e-2051.16uncharacterized protein LOC111018910 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1DI541.9e-1960.55probable serine/threonine-protein kinase PBL11 OS=Momordica charantia OX=3673 GN... [more]
W9RHB32.3e-1737.31Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 128..165
e-value: 7.3E-6
score: 26.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..249
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 227..249

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g16010.1Moc10g16010.1mRNA