Moc10g15600 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g15600
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr10: 11874689 .. 11875482 (+)
RNA-Seq Expression	Moc10g15600
Synteny	Moc10g15600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCAAACGAAGGTAAATATGATTTACTTGTTTTGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATATTGGATTCAGGAGCCACTAATAACTTTTTTCTTGATTTCAGGGAATTAGTTACTGAAGGCAGCTTGATGTCGGAGAGATGACTCTCAAGGTCGGAACGAGAGAGGTCGTCTCAACTGTGGCGGTAGGGGAGCTCAAGTTGTTTACAAACAAGAATATGTATATATTATTAGATAATGTGTACGTGGTTCCTAAAATTAAAAGGAACTTAATTTCAGTCTCTTGTTTGTTAGAACATATGTATTCCATTTCATTTCAATTGAATGAAGCATTCATTTCGAGAAATGGTGTTAATATTTGTTCTGCTTTGCTTGAAAACAACTTGTATGTGCTAAGACCAACCATAACTAAAGCAGTTTTTAATACCGAGTTGTTTAAAAATGCTAGAACTCAAAATAAAAGGCAAAAAGTTTCTCAAAAAGAAAATACCTATCTTTGACACTTAATATTAGGTCACATTAATCTCAATAGGATTAGGAGGTTGGTTAAGAATGACATTCTAAGTGAGTTAGAAGATGATTCTTTACCACCATGTGAGTCTTGTCTTGAAGGCAAGATGACTAGAAGACCTTCTACTGGAAAAGTTTATAGAGCAAAAGAGCCCTTAGAACTTATACATTCAGACCGTTGTGATCCGATGAATGTTAATGTAACGCCCCGCGTTCTCTGA

mRNA sequence

ATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCAAACGAAGGTCACATTAATCTCAATAGGATTAGGAGGTTGGTTAAGAATGACATTCTAAGTGAGTTAGAAGATGATTCTTTACCACCATGTGAGTCTTGTCTTGAAGGCAAGATGACTAGAAGACCTTCTACTGGAAAAGTTTATAGAGCAAAAGAGCCCTTAGAACTTATACATTCAGACCGTTGTGATCCGATGAATGTTAATGTAACGCCCCGCGTTCTCTGA

Coding sequence (CDS)

ATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCCGAAAAGAAGAAAGCAAACGAAGGTCACATTAATCTCAATAGGATTAGGAGGTTGGTTAAGAATGACATTCTAAGTGAGTTAGAAGATGATTCTTTACCACCATGTGAGTCTTGTCTTGAAGGCAAGATGACTAGAAGACCTTCTACTGGAAAAGTTTATAGAGCAAAAGAGCCCTTAGAACTTATACATTCAGACCGTTGTGATCCGATGAATGTTAATGTAACGCCCCGCGTTCTCTGA

Protein sequence

MDGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRRPSTGKVYRAKEPLELIHSDRCDPMNVNVTPRVL

Homology

[Close]

BLAST of Moc10g15600 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 2   DGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRRP 61
           +GHWKRNCPKYLAEKKKA +GHINLNRI RLVKN ILSELE++SLP CESCLEGKMT+RP
Sbjct: 224 EGHWKRNCPKYLAEKKKAKQGHINLNRIERLVKNGILSELEENSLPICESCLEGKMTKRP 283

Query: 62  STGKVYRAKEPLELIHSDRCDPMNV 87
            TGK +RAKEPLEL+HSD C PMNV
Sbjct: 284 FTGKGHRAKEPLELVHSDLCGPMNV 308

[Close]

BLAST of Moc10g15600 vs. NCBI nr
Match: KAA0060254.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 2   DGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRRP 61
           +GHWKRNCPKYLAEKKKA +GHINLNRI RLVKN ILSELE++SLP CESCLEGKMT+RP
Sbjct: 224 EGHWKRNCPKYLAEKKKAKQGHINLNRIERLVKNGILSELEENSLPICESCLEGKMTKRP 283

Query: 62  STGKVYRAKEPLELIHSDRCDPMNV 87
            TGK +RAKEPLEL+HSD C PMNV
Sbjct: 284 FTGKGHRAKEPLELVHSDLCGPMNV 308

[Close]

BLAST of Moc10g15600 vs. NCBI nr
Match: KAA0054309.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 2   DGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRRP 61
           +GHWKRNCPKYLAEKKKA +GHINLNRI RLVKN +LSELE++SLP CESCLEGKMT+RP
Sbjct: 269 EGHWKRNCPKYLAEKKKAKQGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRP 328

Query: 62  STGKVYRAKEPLELIHSDRCDPMNV 87
            T K +RAKEPLEL+HSD C PMNV
Sbjct: 329 FTRKGHRAKEPLELVHSDLCGPMNV 353

[Close]

BLAST of Moc10g15600 vs. NCBI nr
Match: KAA0062410.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK26571.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 6.3e-31
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1   MDGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRR 60
           +D HWK NCPKYL  KKK  EGHINL+RIRRLVKN +L+ELEDDSLPPCES LEGKMT+R
Sbjct: 29  VDEHWKTNCPKYLV-KKKVKEGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKR 88

Query: 61  PSTGKVYRAKEPLELIHSDRCDPMNV 87
           P TGK YRAKEPLELIHSD C PMNV
Sbjct: 89  PFTGKGYRAKEPLELIHSDLCGPMNV 113

[Close]

BLAST of Moc10g15600 vs. NCBI nr
Match: TYJ96910.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 66/107 (61.68%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 2   DGHWKRNCPKYLAEKKKANE----------------------GHINLNRIRRLVKNDILS 61
           +GHWKRNCPKYLAEKKKA +                       HINLNRI RLV+N +LS
Sbjct: 182 EGHWKRNCPKYLAEKKKAKQVTQNKRLRISPKENAHLWHLRLVHINLNRIERLVQNGLLS 241

Query: 62  ELEDDSLPPCESCLEGKMTRRPSTGKVYRAKEPLELIHSDRCDPMNV 87
           ELE++ LP CESCLEGKMT+RP TGK +RAKEPLEL+HSD C PMNV
Sbjct: 242 ELEENYLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNV 288

[Close]

BLAST of Moc10g15600 vs. ExPASy TrEMBL
Match: A0A5A7UYX7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.5e-34
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 2   DGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRRP 61
           +GHWKRNCPKYLAEKKKA +GHINLNRI RLVKN ILSELE++SLP CESCLEGKMT+RP
Sbjct: 224 EGHWKRNCPKYLAEKKKAKQGHINLNRIERLVKNGILSELEENSLPICESCLEGKMTKRP 283

Query: 62  STGKVYRAKEPLELIHSDRCDPMNV 87
            TGK +RAKEPLEL+HSD C PMNV
Sbjct: 284 FTGKGHRAKEPLELVHSDLCGPMNV 308

[Close]

BLAST of Moc10g15600 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.5e-34
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 2   DGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRRP 61
           +GHWKRNCPKYLAEKKKA +GHINLNRI RLVKN ILSELE++SLP CESCLEGKMT+RP
Sbjct: 224 EGHWKRNCPKYLAEKKKAKQGHINLNRIERLVKNGILSELEENSLPICESCLEGKMTKRP 283

Query: 62  STGKVYRAKEPLELIHSDRCDPMNV 87
            TGK +RAKEPLEL+HSD C PMNV
Sbjct: 284 FTGKGHRAKEPLELVHSDLCGPMNV 308

[Close]

BLAST of Moc10g15600 vs. ExPASy TrEMBL
Match: A0A5A7ULH1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00280 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.4e-33
Identity = 68/85 (80.00%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 2   DGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRRP 61
           +GHWKRNCPKYLAEKKKA +GHINLNRI RLVKN +LSELE++SLP CESCLEGKMT+RP
Sbjct: 269 EGHWKRNCPKYLAEKKKAKQGHINLNRIERLVKNGLLSELEENSLPVCESCLEGKMTKRP 328

Query: 62  STGKVYRAKEPLELIHSDRCDPMNV 87
            T K +RAKEPLEL+HSD C PMNV
Sbjct: 329 FTRKGHRAKEPLELVHSDLCGPMNV 353

[Close]

BLAST of Moc10g15600 vs. ExPASy TrEMBL
Match: A0A5D3DS50 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001740 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1   MDGHWKRNCPKYLAEKKKANEGHINLNRIRRLVKNDILSELEDDSLPPCESCLEGKMTRR 60
           +D HWK NCPKYL  KKK  EGHINL+RIRRLVKN +L+ELEDDSLPPCES LEGKMT+R
Sbjct: 29  VDEHWKTNCPKYLV-KKKVKEGHINLDRIRRLVKNGLLNELEDDSLPPCESYLEGKMTKR 88

Query: 61  PSTGKVYRAKEPLELIHSDRCDPMNV 87
           P TGK YRAKEPLELIHSD C PMNV
Sbjct: 89  PFTGKGYRAKEPLELIHSDLCGPMNV 113

[Close]

BLAST of Moc10g15600 vs. ExPASy TrEMBL
Match: A0A5D3BAN6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00110 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 66/107 (61.68%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 2   DGHWKRNCPKYLAEKKKANE----------------------GHINLNRIRRLVKNDILS 61
           +GHWKRNCPKYLAEKKKA +                       HINLNRI RLV+N +LS
Sbjct: 182 EGHWKRNCPKYLAEKKKAKQVTQNKRLRISPKENAHLWHLRLVHINLNRIERLVQNGLLS 241

Query: 62  ELEDDSLPPCESCLEGKMTRRPSTGKVYRAKEPLELIHSDRCDPMNV 87
           ELE++ LP CESCLEGKMT+RP TGK +RAKEPLEL+HSD C PMNV
Sbjct: 242 ELEENYLPVCESCLEGKMTKRPFTGKGHRAKEPLELVHSDLCGPMNV 288

The following BLAST results are available for this feature:

BLAST of Moc10g15600 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97618.1	1.8e-33	82.35	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060254.1	1.8e-33	82.35	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054309.1	1.9e-32	80.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062410.1	6.3e-31	80.23	gag/pol protein [Cucumis melo var. makuwa] >TYK26571.1 gag/pol protein [Cucumis ...	[more]
TYJ96910.1	2.5e-27	61.68	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc10g15600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g15600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYX7	8.5e-34	82.35	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180...	[more]
A0A5D3BHG7	8.5e-34	82.35	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015...	[more]
A0A5A7ULH1	9.4e-33	80.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00280...	[more]
A0A5D3DS50	3.0e-31	80.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G0017...	[more]
A0A5D3BAN6	1.2e-27	61.68	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G0011...	[more]

BLAST of Moc10g15600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 22..57 e-value: 1.1E-6 score: 28.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g15600.1	Moc10g15600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding