Moc10g15580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g15580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr10: 11869109 .. 11869569 (+)
RNA-Seq Expression	Moc10g15580
Synteny	Moc10g15580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAGAGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAAAAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCGGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCCGCTGCTACCGCTACCAAGAAATGTAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCATTGTAATATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCTGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTTTGGGAAACATGTTTAGTGGAGAACGATGACTCCGCCTGGATATTGAATTCATGAACCACTAATCACGTTTCTTCTTCATTTCAGGGAATTAG

mRNA sequence

ATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAGAGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAAAAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCGGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCCGCTGCTACCGCTACCAAGAAATGTAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCATTGTAATATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCTGAAAAGAAGAAAGCCAACGAAGGGAATTAG

Coding sequence (CDS)

ATGAATAAGCTGGAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCAGTCTCTTATGAAGAGTAAGGGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAAAAGGTTCAACCGAGGTTCGTCCTCTGGAACCAAGTCTGCGCCCTCTTCTTCGGGAAGTAAGACTTTTAAGAAGAAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCCGCTGCTACCGCTACCAAGAAATGTAAGGCCAAGGTTGCAGAGAAAGGAAAGTGTTTCCATTGTAATATGGACGGGCATTGGAAGCGCAACTGCCCAAAGTACTTGGCTGAAAAGAAGAAAGCCAACGAAGGGAATTAG

Protein sequence

MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATSKRFNRGSSSGTKSAPSSSGSKTFKKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEGN

Homology

[Close]

BLAST of Moc10g15580 vs. NCBI nr
Match: KAA0046844.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK04489.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-32
Identity = 87/119 (73.11%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  PSSSG+K +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKYMPSSSGNKKW 234

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEGN 119
           KKKK  G+G+K + AAT T K KAKVA KG CFHCN +GHWKRNCPKYLAEKKKA +GN
Sbjct: 235 KKKK-GGQGNKANLAATKTSK-KAKVA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGN 290

[Close]

BLAST of Moc10g15580 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKW 234

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEG 118
           KKKK  G+G+K + AA  T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +G
Sbjct: 235 KKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQG 289

[Close]

BLAST of Moc10g15580 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +
Sbjct: 174 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKW 233

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEG 118
           KKKK  G+G+K + AA  T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +G
Sbjct: 234 KKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQG 288

[Close]

BLAST of Moc10g15580 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKW 234

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEG 118
           KKKK  G+G+K + AA  T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +G
Sbjct: 235 KKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQG 289

[Close]

BLAST of Moc10g15580 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-31
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKW 234

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEG 118
           KKKK  G+G+K + AA  T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +G
Sbjct: 235 KKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQG 289

[Close]

BLAST of Moc10g15580 vs. ExPASy TrEMBL
Match: A0A5D3C269 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001030 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.2e-33
Identity = 87/119 (73.11%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTK  PSSSG+K +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKYMPSSSGNKKW 234

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEGN 119
           KKKK  G+G+K + AAT T K KAKVA KG CFHCN +GHWKRNCPKYLAEKKKA +GN
Sbjct: 235 KKKK-GGQGNKANLAATKTSK-KAKVA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQGN 290

[Close]

BLAST of Moc10g15580 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKW 234

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEG 118
           KKKK  G+G+K + AA  T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +G
Sbjct: 235 KKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQG 289

[Close]

BLAST of Moc10g15580 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +
Sbjct: 292 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKW 351

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEG 118
           KKKK  G+G+K + AA  T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +G
Sbjct: 352 KKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQG 406

[Close]

BLAST of Moc10g15580 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKW 234

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEG 118
           KKKK  G+G+K + AA  T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +G
Sbjct: 235 KKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQG 289

[Close]

BLAST of Moc10g15580 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MNKLEYTLTTLLNELQTYQSLMKSKGQEGEANVATS-KRFNRGSSSGTKSAPSSSGSKTF 60
           MNK+ YTLTTLLNELQT++SLMK KGQ+GEANVATS ++F+RGS+SGTKS PSSSG+K +
Sbjct: 175 MNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKW 234

Query: 61  KKKKAAGKGSKPDSAATATKKCKAKVAEKGKCFHCNMDGHWKRNCPKYLAEKKKANEG 118
           KKKK  G+G+K + AA  T K KAK A KG CFHCN +GHWKRNCPKYLAEKKKA +G
Sbjct: 235 KKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCNQEGHWKRNCPKYLAEKKKAKQG 289

The following BLAST results are available for this feature:

BLAST of Moc10g15580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046844.1	1.9e-32	73.11	gag/pol protein [Cucumis melo var. makuwa] >TYK04489.1 gag/pol protein [Cucumis ...	[more]
KAA0044955.1	2.1e-31	72.03	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.1e-31	72.03	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.1e-31	72.03	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	2.1e-31	72.03	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc10g15580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g15580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C269	9.2e-33	73.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G0010...	[more]
A0A5A7SMH8	1.0e-31	72.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5A7V4M1	1.0e-31	72.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	1.0e-31	72.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.0e-31	72.03	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Moc10g15580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.60.10		coord: 80..116 e-value: 1.4E-6 score: 29.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..59
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 89..106 e-value: 5.3E-4 score: 20.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 90..106 score: 9.520856
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 79..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g15580.1	Moc10g15580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding