Moc10g15140 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g15140
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIntegrase
Locationchr10: 11497309 .. 11497632 (-)
RNA-Seq ExpressionMoc10g15140
SyntenyMoc10g15140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTACTTCTCCTAAGGAAGCTTTTCAGATGCAAACCTCCTTCAGAGGCAGTTATTGCGGAATACGTGGCAGTCGTGGTGGTCGAGGAGGTGGAAGAAACTATGACAATAGAAATTGTGCGAGTTATGAAAACAAGCAAGAAAACCCTTCTTCATTTCGAGGAAGATGAGGTAGAAGAAGAGGAGGTTTTGGTAGAAACCAAGGAAGTGGTCGTGGCAATTTCTCTCACATCAAATGTTTTAATTGCAAAAAGTATGGTCACTTTCAAGCAGATTGTTGGGCTCCGAGAAATGAAGATGGAAATTATAATTCTACCATGA

mRNA sequence

ATGATGTTACTTCTCCTAAGGAAGCTTTTCAGATGCAAACCTCCTTCAGAGGCAGTTATTGCGGAATACGTGGCAGTCGTGGTGGTCGAGGAGGTGGAAGAAACTATGACAATAGAAATTGTGCGAGTTATGAAAACAAGCAAGAAAACCCTTCTTCATTTCGAGGAAGATGAGGTAGAAGAAGAGGAGGTTTTGGTAGAAACCAAGGAAGTGGTCGTGGCAATTTCTCTCACATCAAATGTTTTAATTGCAAAAAGTATGGTCACTTTCAAGCAGATTGTTGGGCTCCGAGAAATGAAGATGGAAATTATAATTCTACCATGA

Coding sequence (CDS)

ATGATGTTACTTCTCCTAAGGAAGCTTTTCAGATGCAAACCTCCTTCAGAGGCAGTTATTGCGGAATACGTGGCAGTCGTGGTGGTCGAGGAGGTGGAAGAAACTATGACAATAGAAATTGTGCGAGTTATGAAAACAAGCAAGAAAACCCTTCTTCATTTCGAGGAAGATGAGGTAGAAGAAGAGGAGGTTTTGGTAGAAACCAAGGAAGTGGTCGTGGCAATTTCTCTCACATCAAATGTTTTAATTGCAAAAAGTATGGTCACTTTCAAGCAGATTGTTGGGCTCCGAGAAATGAAGATGGAAATTATAATTCTACCATGA

Protein sequence

MMLLLLRKLFRCKPPSEAVIAEYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAISLTSNVLIAKSMVTFKQIVGLREMKMEIIILP
Homology
BLAST of Moc10g15140 vs. NCBI nr
Match: TYK19542.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 22  EYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAISLTSNV 81
           E V V+  E VEETM IE+V+++K   K LL+ EE+E EEEE L ETKEVVV ISLT NV
Sbjct: 119 EDVVVLKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETKEVVVVISLTLNV 178

Query: 82  LIAK 86
           LIA+
Sbjct: 179 LIAE 182

BLAST of Moc10g15140 vs. NCBI nr
Match: KAA0058989.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 17  EAVIAEYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAIS 76
           + V  E V ++  E VEETM IE+V+++K   K LL+ EE+E EEEE L ETKEVVV IS
Sbjct: 109 KVVHVEDVVILKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETKEVVVVIS 168

Query: 77  LTSNVLIAK 86
           LT NVLIA+
Sbjct: 169 LTLNVLIAE 177

BLAST of Moc10g15140 vs. NCBI nr
Match: KAA0037654.1 (integrase [Cucumis melo var. makuwa] >TYK22799.1 integrase [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 16  SEAVIAEYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAI 75
           S  +  E V V+  EEVEETM IE+++++K  KK LL+ EE+E E++E L ETKEVVV I
Sbjct: 146 SLVIHVEDVVVMEDEEVEETMIIELMQILKIHKKALLYLEEEEAEKKEALAETKEVVVVI 205

Query: 76  SLTSNVLIAK 86
           SLT N LIA+
Sbjct: 206 SLTFNALIAE 215

BLAST of Moc10g15140 vs. NCBI nr
Match: KAA0033891.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 22 EYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAISLTSNV 81
          E V V+  EEVEETM IE V+++K  KK LL+ EE+E +EEE L ETKEVV  ISL  N 
Sbjct: 2  EDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALTETKEVVGVISLKFNA 61

Query: 82 LIAKSM 88
          LIA+S+
Sbjct: 62 LIAESL 67

BLAST of Moc10g15140 vs. NCBI nr
Match: TYK01275.1 (integrase [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 22 EYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAISLTSNV 81
          E V V+  EEVEETM IE V+++K  KK LL+ EE+E +EEE L ETKEVV  ISL  N 
Sbjct: 2  EDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALAETKEVVGVISLKFNA 61

Query: 82 LIAKSM 88
          LIA+S+
Sbjct: 62 LIAESL 67

BLAST of Moc10g15140 vs. ExPASy TrEMBL
Match: A0A5D3D7N1 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00370 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 22  EYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAISLTSNV 81
           E V V+  E VEETM IE+V+++K   K LL+ EE+E EEEE L ETKEVVV ISLT NV
Sbjct: 119 EDVVVLKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETKEVVVVISLTLNV 178

Query: 82  LIAK 86
           LIA+
Sbjct: 179 LIAE 182

BLAST of Moc10g15140 vs. ExPASy TrEMBL
Match: A0A5A7UZN5 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00030 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 17  EAVIAEYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAIS 76
           + V  E V ++  E VEETM IE+V+++K   K LL+ EE+E EEEE L ETKEVVV IS
Sbjct: 109 KVVHVEDVVILKDEVVEETMIIEVVQILKIHNKALLYLEEEEAEEEEALAETKEVVVVIS 168

Query: 77  LTSNVLIAK 86
           LT NVLIA+
Sbjct: 169 LTLNVLIAE 177

BLAST of Moc10g15140 vs. ExPASy TrEMBL
Match: A0A5D3DHS9 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00370 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.8e-07
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 0

Query: 16  SEAVIAEYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAI 75
           S  +  E V V+  EEVEETM IE+++++K  KK LL+ EE+E E++E L ETKEVVV I
Sbjct: 146 SLVIHVEDVVVMEDEEVEETMIIELMQILKIHKKALLYLEEEEAEKKEALAETKEVVVVI 205

Query: 76  SLTSNVLIAK 86
           SLT N LIA+
Sbjct: 206 SLTFNALIAE 215

BLAST of Moc10g15140 vs. ExPASy TrEMBL
Match: A0A5D3BQ20 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00620 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 22 EYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAISLTSNV 81
          E V V+  EEVEETM IE V+++K  KK LL+ EE+E +EEE L ETKEVV  ISL  N 
Sbjct: 2  EDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALAETKEVVGVISLKFNA 61

Query: 82 LIAKSM 88
          LIA+S+
Sbjct: 62 LIAESL 67

BLAST of Moc10g15140 vs. ExPASy TrEMBL
Match: A0A5A7SWQ3 (Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00760 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 22 EYVAVVVVEEVEETMTIEIVRVMKTSKKTLLHFEEDEVEEEEVLVETKEVVVAISLTSNV 81
          E V V+  EEVEETM IE V+++K  KK LL+ EE+E +EEE L ETKEVV  ISL  N 
Sbjct: 2  EDVVVMEDEEVEETMIIEAVQILKIHKKALLYLEEEEAKEEEALTETKEVVGVISLKFNA 61

Query: 82 LIAKSM 88
          LIA+S+
Sbjct: 62 LIAESL 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK19542.14.3e-0762.50integrase [Cucumis melo var. makuwa][more]
KAA0058989.15.6e-0757.97integrase [Cucumis melo var. makuwa][more]
KAA0037654.11.6e-0655.71integrase [Cucumis melo var. makuwa] >TYK22799.1 integrase [Cucumis melo var. ma... [more]
KAA0033891.13.6e-0659.09integrase [Cucumis melo var. makuwa][more]
TYK01275.13.6e-0659.09integrase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D7N12.1e-0762.50Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00370 PE=4... [more]
A0A5A7UZN52.7e-0757.97Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00030 PE=4... [more]
A0A5D3DHS97.8e-0755.71Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00370 PE=4... [more]
A0A5D3BQ201.7e-0659.09Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00620 PE=4 ... [more]
A0A5A7SWQ31.7e-0659.09Integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00760 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g15140.1Moc10g15140.1mRNA