Moc10g14940 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g14940
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr10: 11369659 .. 11370114 (+)
RNA-Seq Expression	Moc10g14940
Synteny	Moc10g14940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGCTTCTATTATTGCTCTCTTAGCCACTGAAAAACTTAACAGTGAGAATTACAAACAATTGAAATCGAACCTAAACATTATACTTGTAATAAATGATCTTAGGTTCGTCTTGCAAGAGGAACGTCCTTTAGCTCCTGCGCTTGACGCCACTGTGGCGGTGCACAAATTCTATGATCGGTGGATCAAGGCAAATGATAAGGCCGAGGTCTACATATTGACGAGCATATCTAATGTGCTTGCTAAGAAGCACGAGAATATGGTCACTGCCAAGGAGATCATGGACTCGTTGCAGAGCATGTTTGGACAATCGTCCTCACAGGCTCAACATGAAGTCCTTAAGTTCGTCTATAACTCCTGCATGAAGGAGGGCTTGTCAGTGCGAGAACACGTTCTCAACCTGATGATCCACTTCAACATGGCGGAGACGAATGAGGCCATCATAGACGAGTAG

mRNA sequence

ATGTCCGCTTCTATTATTGCTCTCTTAGCCACTGAAAAACTTAACAGTGAGAATTACAAACAATTGAAATCGAACCTAAACATTATACTTGTAATAAATGATCTTAGGTTCGTCTTGCAAGAGGAACGTCCTTTAGCTCCTGCGCTTGACGCCACTGTGGCGGTGCACAAATTCTATGATCGGTGGATCAAGGCAAATGATAAGGCCGAGGTCTACATATTGACGAGCATATCTAATGTGCTTGCTAAGAAGCACGAGAATATGGTCACTGCCAAGGAGATCATGGACTCGTTGCAGAGCATGTTTGGACAATCGTCCTCACAGGCTCAACATGAAGTCCTTAAGTTCGTCTATAACTCCTGCATGAAGGAGGGCTTGTCAGTGCGAGAACACGTTCTCAACCTGATGATCCACTTCAACATGGCGGAGACGAATGAGGCCATCATAGACGAGTAG

Coding sequence (CDS)

ATGTCCGCTTCTATTATTGCTCTCTTAGCCACTGAAAAACTTAACAGTGAGAATTACAAACAATTGAAATCGAACCTAAACATTATACTTGTAATAAATGATCTTAGGTTCGTCTTGCAAGAGGAACGTCCTTTAGCTCCTGCGCTTGACGCCACTGTGGCGGTGCACAAATTCTATGATCGGTGGATCAAGGCAAATGATAAGGCCGAGGTCTACATATTGACGAGCATATCTAATGTGCTTGCTAAGAAGCACGAGAATATGGTCACTGCCAAGGAGATCATGGACTCGTTGCAGAGCATGTTTGGACAATCGTCCTCACAGGCTCAACATGAAGTCCTTAAGTTCGTCTATAACTCCTGCATGAAGGAGGGCTTGTCAGTGCGAGAACACGTTCTCAACCTGATGATCCACTTCAACATGGCGGAGACGAATGAGGCCATCATAGACGAGTAG

Protein sequence

MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYDRWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNSCMKEGLSVREHVLNLMIHFNMAETNEAIIDE

Homology

[Close]

BLAST of Moc10g14940 vs. NCBI nr
Match: XP_022151295.1 (uncharacterized protein LOC111019259 [Momordica charantia])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD
Sbjct: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS
Sbjct: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
           CMKEGLSVREHVLNLMIHFNMAETNEAIIDE
Sbjct: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 151

[Close]

BLAST of Moc10g14940 vs. NCBI nr
Match: XP_022152352.1 (uncharacterized protein LOC111020095 [Momordica charantia])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 116/151 (76.82%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           MS SIIALLA ++LN ENYKQ KSNLN ILVI+DL+FVLQE+ P A A +ATVAV   YD
Sbjct: 1   MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLKFVLQEDCPQASAPNATVAVRIAYD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RWIKANDKA+VYIL SIS+VLAKKHE+ +TAKEIMDSLQSMFGQ SSQA+HE LKF+YNS
Sbjct: 61  RWIKANDKAKVYILASISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
            MKEG SVREHVLNLM+HFN+AE+N A+IDE
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGAVIDE 151

[Close]

BLAST of Moc10g14940 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 222.2 bits (565), Expect = 2.9e-54
Identity = 116/151 (76.82%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           MSASIIALLA +KLN ENY+Q KSNLN ILVI+DLRFVLQE+ P AP  +ATVAV   YD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RWIK+NDKA+VYIL SIS+VLAKKHE+ VT KEIMDSLQSMFGQ S QA+HE LKFVYNS
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
            MKEG SVREHVLNLM+HFN+AE+N  +IDE
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDE 151

[Close]

BLAST of Moc10g14940 vs. NCBI nr
Match: XP_022158062.1 (uncharacterized protein LOC111024637 [Momordica charantia])

HSP 1 Score: 208.8 bits (530), Expect = 3.4e-50
Identity = 109/151 (72.19%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           MS SII LL  +KLN ENYKQ KSN+N IL+I+DLRFVLQE+ P APA +ATVAV   YD
Sbjct: 1   MSTSIITLLVAQKLNDENYKQWKSNINTILMIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RWIKANDKA+V IL SIS+VLAKKHEN V  KEIMDSLQSMFGQ SSQA+HE L  +YNS
Sbjct: 61  RWIKANDKAKVDILASISDVLAKKHENSVITKEIMDSLQSMFGQPSSQARHEALNSIYNS 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
            MK+  SVREHVLNLM+HFN+AE+N  +IDE
Sbjct: 121 RMKKDSSVREHVLNLMVHFNVAESNMTVIDE 151

[Close]

BLAST of Moc10g14940 vs. NCBI nr
Match: XP_022143540.1 (uncharacterized protein LOC111013417 [Momordica charantia])

HSP 1 Score: 191.0 bits (484), Expect = 7.3e-45
Identity = 96/151 (63.58%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           M++SI+ L A+EKLN  NY   K+NLN ILV++DLRFVL EE P  PA +A   V + +D
Sbjct: 1   MNSSIVQLFASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAANANRNVREAFD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RW+KANDKA VYIL S+++VLAKKHE ++TAKEIMDSL++MFG+ SS  +HE LK+VYN 
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGEPSSTLRHEALKYVYNE 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
            MKEG SVREHVL++M+HFN AE NEA IDE
Sbjct: 121 HMKEGTSVREHVLDMMVHFNTAEVNEATIDE 151

[Close]

BLAST of Moc10g14940 vs. ExPASy TrEMBL
Match: A0A6J1DAT1 (uncharacterized protein LOC111019259 OS=Momordica charantia OX=3673 GN=LOC111019259 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.3e-75
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD
Sbjct: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS
Sbjct: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
           CMKEGLSVREHVLNLMIHFNMAETNEAIIDE
Sbjct: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 151

[Close]

BLAST of Moc10g14940 vs. ExPASy TrEMBL
Match: A0A6J1DFZ2 (uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020095 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 116/151 (76.82%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           MS SIIALLA ++LN ENYKQ KSNLN ILVI+DL+FVLQE+ P A A +ATVAV   YD
Sbjct: 1   MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLKFVLQEDCPQASAPNATVAVRIAYD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RWIKANDKA+VYIL SIS+VLAKKHE+ +TAKEIMDSLQSMFGQ SSQA+HE LKF+YNS
Sbjct: 61  RWIKANDKAKVYILASISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQARHEALKFIYNS 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
            MKEG SVREHVLNLM+HFN+AE+N A+IDE
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGAVIDE 151

[Close]

BLAST of Moc10g14940 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 116/151 (76.82%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           MSASIIALLA +KLN ENY+Q KSNLN ILVI+DLRFVLQE+ P AP  +ATVAV   YD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RWIK+NDKA+VYIL SIS+VLAKKHE+ VT KEIMDSLQSMFGQ S QA+HE LKFVYNS
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
            MKEG SVREHVLNLM+HFN+AE+N  +IDE
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDE 151

[Close]

BLAST of Moc10g14940 vs. ExPASy TrEMBL
Match: A0A6J1DW68 (uncharacterized protein LOC111024637 OS=Momordica charantia OX=3673 GN=LOC111024637 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.6e-50
Identity = 109/151 (72.19%), Postives = 124/151 (82.12%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           MS SII LL  +KLN ENYKQ KSN+N IL+I+DLRFVLQE+ P APA +ATVAV   YD
Sbjct: 1   MSTSIITLLVAQKLNDENYKQWKSNINTILMIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RWIKANDKA+V IL SIS+VLAKKHEN V  KEIMDSLQSMFGQ SSQA+HE L  +YNS
Sbjct: 61  RWIKANDKAKVDILASISDVLAKKHENSVITKEIMDSLQSMFGQPSSQARHEALNSIYNS 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
            MK+  SVREHVLNLM+HFN+AE+N  +IDE
Sbjct: 121 RMKKDSSVREHVLNLMVHFNVAESNMTVIDE 151

[Close]

BLAST of Moc10g14940 vs. ExPASy TrEMBL
Match: A0A6J1CP29 (uncharacterized protein LOC111013417 OS=Momordica charantia OX=3673 GN=LOC111013417 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.5e-45
Identity = 96/151 (63.58%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60
           M++SI+ L A+EKLN  NY   K+NLN ILV++DLRFVL EE P  PA +A   V + +D
Sbjct: 1   MNSSIVQLFASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAANANRNVREAFD 60

Query: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQAQHEVLKFVYNS 120
           RW+KANDKA VYIL S+++VLAKKHE ++TAKEIMDSL++MFG+ SS  +HE LK+VYN 
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGEPSSTLRHEALKYVYNE 120

Query: 121 CMKEGLSVREHVLNLMIHFNMAETNEAIIDE 152
            MKEG SVREHVL++M+HFN AE NEA IDE
Sbjct: 121 HMKEGTSVREHVLDMMVHFNTAEVNEATIDE 151

The following BLAST results are available for this feature:

BLAST of Moc10g14940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151295.1	1.5e-74	100.00	uncharacterized protein LOC111019259 [Momordica charantia]	[more]
XP_022152352.1	2.2e-54	76.82	uncharacterized protein LOC111020095 [Momordica charantia]	[more]
XP_022158197.1	2.9e-54	76.82	uncharacterized protein LOC111024734 [Momordica charantia]	[more]
XP_022158062.1	3.4e-50	72.19	uncharacterized protein LOC111024637 [Momordica charantia]	[more]
XP_022143540.1	7.3e-45	63.58	uncharacterized protein LOC111013417 [Momordica charantia]	[more]

BLAST of Moc10g14940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g14940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAT1	7.3e-75	100.00	uncharacterized protein LOC111019259 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DFZ2	1.1e-54	76.82	uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DWL0	1.4e-54	76.82	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DW68	1.6e-50	72.19	uncharacterized protein LOC111024637 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1CP29	3.5e-45	63.58	uncharacterized protein LOC111013417 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Moc10g14940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..139 e-value: 1.3E-7 score: 31.5
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..150
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g14940.1	Moc10g14940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding