Moc10g14830 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g14830
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 11271320 .. 11273084 (+)
RNA-Seq Expression	Moc10g14830
Synteny	Moc10g14830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCCAATTTTTATTTCATTGTGGGAGTTCACATTGTGGGTTCTGGTTCGAAAGGCGTTCGCAAGACTTATGCTGTTTTGGTCACAAGGTTGGGTGAGAATTGCAGTTTTCTTATATCTACAAGTCTGGTCGAGAGAGACGGACATGGATGTAAGGGTGGTTGACGGGCTGCACCTACATGGGGAGATTCTTTATGTCTACTTTGGTATCATCAAGAATCGGGAGTGGGGACATCTCAAGCCGAAAATCACTGAGATAGGATTGAGACACTACTTCGGCAGATTCCTACTTGGGAAAACAGAGAGTTCTGTACATGGCTAACTTGGGAACAACAAAACCAGCCTTTTGGACCATTCAAGATGATTTCTTTCGACTTTCAGGCGGCAATTCCTTGTTATTGCTGTGTTGTTGAAGATTATTTTTTCAGTCGGCATCTTTTGTTAATATGGGTTGGGGGCGAGTATGAGAATTTTGTTTAGTGTTTGTATGCACACCTTGAGGACAAGGTGTCTTTGAAGGGTGGGGTAATATGAGAGTCCTAATAGGGATAGTTTGGGAATATTATTAGTGGGGGTATTATGTTAATTAGTTAGGAGTTGTTATAAATAGGGGTAGTAGGGAGAGGAGAAGAATATCTTGGAGAATAGCATTTTGATGAGGACTTGAGAGAGTTCTTTTGGAGAGAGATAGTCCTCTCAAAAGACTATCGATATTGTAATTACTCTTTTGTATTGCAATATAGTGTTCTTGTTAGGTTCTTGTATTTGGGTACCTAACAACTTGATCTCAGTAAAAAATTTGATCAAAGATCTAGGATGCAGAGTAACTTTTTCTAATTCTTCTTGTATTCTACAGAACTAAAACAATGAAAAGACGATTGGACTTGCTAAAGAAAAAAATGGTCTTTATTATCTTGAGGAACCTACTGGTCAGGATATTGTTCCACTCGCTCTCACCTCACAAACTCATCATATTTCAAGTAAGCTATGGTTGCACCATTATAGACTAGGACATCCCTCATTTAGAACCCTTAAAATTATGTTTCCTGATTTGTTCCAAAATATTCATCCTGAGTTAATTCAATGCGATGTTTGTGAATTTGCTAAACACAAACGGGTCCCCTTTCCTAGTAATAATAAAAGGGCATCAAATGCACGATAAAAATTTGAATAAACCTGTAATGGTACAGTAGCAGGAGGATTTGGGTTTAGCACTCAAATGTATTTTTGTTGGATACTCGAACATCCAAAAGCGATATAAGTGTTATCATCCTCCTTCTAAAAGGTACTTCATCTCTGCCAATATTACTCTTACGAAGACACCAGCTTCTTTACCTCACCTTATCTTCAGGGGGAGGAAATATTGTTGGAAGATAAGGATGATTTACCCATCCCTAACCTCACATTTCCTTCACACCCTTTACTATCACCAGTACTAAACCCAAATCCATCACAAGTACTAAACCCCACTGAAATTCTAGGGCCATCTAACCCTCTTGCTATTGTACCGTTACAGGTTTATTCAAGAAGGAACACTGAGCAAGTCCAAGAGTCTGAACATATATCTAGAACTGAAATTGTCGAGAAAAGATTCAATGATGAACCATACATTACAATATCCGCTAATAATGAATCAGATATAGATTTGCCTATCGCCTTGAGGAAACGAAAACGAACTTGCACTCGGTATTCATTGTCACACTTTGTATCCTATGACAAACTCTCAAGTCAGTATAGAAGCTTTGTGGTTAACCTTAAATAA

mRNA sequence

ATGGATGCCAATTTTTATTTCATTGTGGGAGTTCACATTGTGGGTTCTGGTTCGAAAGGCGTTCGCAAGACTTATGCTGTTTTGGTCACAAGTGTTCTTGTTAGAACTAAAACAATGAAAAGACGATTGGACTTGCTAAAGAAAAAAATGGTCTTTATTATCTTGAGGAACCTACTGGGGGAGGAAATATTGTTGGAAGATAAGGATGATTTACCCATCCCTAACCTCACATTTCCTTCACACCCTTTACTATCACCAGTACTAAACCCAAATCCATCACAAGTACTAAACCCCACTGAAATTCTAGGGCCATCTAACCCTCTTGCTATTGTACCGTTACAGGTTTATTCAAGAAGGAACACTGAGCAAGTCCAAGAGTCTGAACATATATCTAGAACTGAAATTGTCGAGAAAAGATTCAATGATGAACCATACATTACAATATCCGCTAATAATGAATCAGATATAGATTTGCCTATCGCCTTGAGGAAACGAAAACGAACTTGCACTCGGTATTCATTGTCACACTTTGTATCCTATGACAAACTCTCAAGTCAGTATAGAAGCTTTGTGGTTAACCTTAAATAA

Coding sequence (CDS)

ATGGATGCCAATTTTTATTTCATTGTGGGAGTTCACATTGTGGGTTCTGGTTCGAAAGGCGTTCGCAAGACTTATGCTGTTTTGGTCACAAGTGTTCTTGTTAGAACTAAAACAATGAAAAGACGATTGGACTTGCTAAAGAAAAAAATGGTCTTTATTATCTTGAGGAACCTACTGGGGGAGGAAATATTGTTGGAAGATAAGGATGATTTACCCATCCCTAACCTCACATTTCCTTCACACCCTTTACTATCACCAGTACTAAACCCAAATCCATCACAAGTACTAAACCCCACTGAAATTCTAGGGCCATCTAACCCTCTTGCTATTGTACCGTTACAGGTTTATTCAAGAAGGAACACTGAGCAAGTCCAAGAGTCTGAACATATATCTAGAACTGAAATTGTCGAGAAAAGATTCAATGATGAACCATACATTACAATATCCGCTAATAATGAATCAGATATAGATTTGCCTATCGCCTTGAGGAAACGAAAACGAACTTGCACTCGGTATTCATTGTCACACTTTGTATCCTATGACAAACTCTCAAGTCAGTATAGAAGCTTTGTGGTTAACCTTAAATAA

Protein sequence

MDANFYFIVGVHIVGSGSKGVRKTYAVLVTSVLVRTKTMKRRLDLLKKKMVFIILRNLLGEEILLEDKDDLPIPNLTFPSHPLLSPVLNPNPSQVLNPTEILGPSNPLAIVPLQVYSRRNTEQVQESEHISRTEIVEKRFNDEPYITISANNESDIDLPIALRKRKRTCTRYSLSHFVSYDKLSSQYRSFVVNLK

Homology

[Close]

BLAST of Moc10g14830 vs. NCBI nr
Match: CAN79660.1 (hypothetical protein VITISV_004324 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-06
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 56  RNLLGEEILLEDKDDLPIPNLTFPSHPLLSPVLNPNPSQVLN--PTEILGPSNPLA---- 115
           ++ L  E  +EDK+    P+LT P H   +  L  +P   L   P E +     +     
Sbjct: 22  QSYLQREPFVEDKEF--FPDLTLP-HSKTNSSLESSPHNTLEFVPPEYIEKLESIIQRKE 81

Query: 116 ----IVPLQVYSRRNTEQVQESEHISRTEIVEKRFNDEPYITISANNE-SDIDLPIALRK 175
                 PL+VYSRR  +   ES H + T   +K   ++   TIS  N+ S++DLPI LRK
Sbjct: 82  GENHSTPLKVYSRR-MQPALESLH-APTIHPDKGIENQ---TISTPNDISNLDLPIVLRK 141

Query: 176 RKRTCTRYSLSHFVSYDKLSSQYRSFVVNL 195
            KR CT++ LS+FVS++ LSS YR+FV  L
Sbjct: 142 EKRQCTQHPLSNFVSFENLSSSYRAFVSRL 163

[Close]

BLAST of Moc10g14830 vs. NCBI nr
Match: RVW30881.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-05
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 72  PIPNLTFPSHPLLSPVLNPNPSQVLNPTEILGPSNPLA-IVPLQVYSRRNTEQVQESEHI 131
           PIP++  P  P ++P      +    PT     S   A  + L VYSRR   + +  +H 
Sbjct: 423 PIPDIPQPILPKIAPEQPVPSTSQSKPTIPTSSSTQHANNIELHVYSRRKRPREELEDH- 482

Query: 132 SRTEIVEKRFNDEPYITISANN---------ESDIDLPIALRKRKRTCTRYSLSHFVSYD 191
               I+E+     P     +N+          +D+ +PIALRK  R+CT++ +S+F+SYD
Sbjct: 483 ---TILEQNQESNPRSESPSNSIQETKVYDTPNDLYMPIALRKGVRSCTQHPISNFISYD 542

Query: 192 KLSSQYRSFVVNL 195
           +LSS+Y +FV NL
Sbjct: 543 RLSSKYHAFVTNL 551

[Close]

BLAST of Moc10g14830 vs. NCBI nr
Match: XP_027072218.1 (uncharacterized protein LOC113697007 isoform X1 [Coffea arabica])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 85  SPVLNPNPSQVLNPTEILG---PSNPLAIVPLQVYSRRNTEQVQESEHISRTEIVEKRFN 144
           SP + P PS +L   E+ G    +  L+   LQVYSRR+   V+++  + RT  +  + +
Sbjct: 362 SPPVLPVPSSLL--PELSGSPDSTTRLSHPNLQVYSRRS--MVEKAPDMLRTSPINSQSS 421

Query: 145 DEPYITISANNESDIDLPIALRKRKRTCTRYSLSHFVSYDKLSSQYRSFVVNL 195
           D P +T S  +    DLPIALRK KR CT + +S+FVSY +LS  Y SFV +L
Sbjct: 422 D-PGMTPSCES----DLPIALRKGKRHCTSHPISNFVSYSRLSLSYSSFVASL 465

[Close]

BLAST of Moc10g14830 vs. NCBI nr
Match: TYK01384.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 48/142 (33.80%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 88  LNPNPSQV--LNPTEILGPSNPLAIVPLQVYSRRNTEQVQ-------------ESEHISR 147
           + P PS V  ++P  I+ P+N    VP + Y RRN +  +             +S   SR
Sbjct: 359 IEPTPSTVSDIDPHPIILPTNQ---VPWKTYYRRNQKGSRVPYQSVACSNPRLQSSSRSR 418

Query: 148 TEIV------EKRFNDEPYITI-SANNESD-------------IDLPIALRKRKRTCTRY 195
           +++       EK   DE  + I ++NNE++             +DLPIALRK  R+CT+Y
Sbjct: 419 SDVAVLENVEEKNSGDETEVRIKTSNNEAEQGHTGKLDKYGPSLDLPIALRKGTRSCTKY 478

[Close]

BLAST of Moc10g14830 vs. NCBI nr
Match: XP_027080654.1 (uncharacterized protein LOC113703474 [Coffea arabica])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 85  SPVLNPNPSQVLNPTEILG---PSNPLAIVPLQVYSRRNTEQVQESEHISRTEIVEKRFN 144
           SP + P PS +L   E+ G    +  L+   LQVYSRR+   V+++  + RT  +  + +
Sbjct: 5   SPPVLPVPSSLL--PELSGSPDSTTRLSRPNLQVYSRRS--MVEKAPDMLRTSPINSQSS 64

Query: 145 DEPYITISANNESDIDLPIALRKRKRTCTRYSLSHFVSYDKLSSQYRSFVVNL 195
           D P +T S  +    DLPIALRK KR CT + +S+FVSY +LS  Y SFV +L
Sbjct: 65  D-PGMTPSCES----DLPIALRKGKRHCTSHPISNFVSYSRLSLSYSSFVASL 108

[Close]

BLAST of Moc10g14830 vs. ExPASy TrEMBL
Match: A5C483 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_004324 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-06
Identity = 56/150 (37.33%), Postives = 80/150 (53.33%), Query Frame = 0


Query: 56  RNLLGEEILLEDKDDLPIPNLTFPSHPLLSPVLNPNPSQVLN--PTEILGPSNPLA---- 115
           ++ L  E  +EDK+    P+LT P H   +  L  +P   L   P E +     +     
Sbjct: 22  QSYLQREPFVEDKEF--FPDLTLP-HSKTNSSLESSPHNTLEFVPPEYIEKLESIIQRKE 81

Query: 116 ----IVPLQVYSRRNTEQVQESEHISRTEIVEKRFNDEPYITISANNE-SDIDLPIALRK 175
                 PL+VYSRR  +   ES H + T   +K   ++   TIS  N+ S++DLPI LRK
Sbjct: 82  GENHSTPLKVYSRR-MQPALESLH-APTIHPDKGIENQ---TISTPNDISNLDLPIVLRK 141

Query: 176 RKRTCTRYSLSHFVSYDKLSSQYRSFVVNL 195
            KR CT++ LS+FVS++ LSS YR+FV  L
Sbjct: 142 EKRQCTQHPLSNFVSFENLSSSYRAFVSRL 163

[Close]

BLAST of Moc10g14830 vs. ExPASy TrEMBL
Match: A0A438D633 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1122 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.1e-06
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 72  PIPNLTFPSHPLLSPVLNPNPSQVLNPTEILGPSNPLA-IVPLQVYSRRNTEQVQESEHI 131
           PIP++  P  P ++P      +    PT     S   A  + L VYSRR   + +  +H 
Sbjct: 423 PIPDIPQPILPKIAPEQPVPSTSQSKPTIPTSSSTQHANNIELHVYSRRKRPREELEDH- 482

Query: 132 SRTEIVEKRFNDEPYITISANN---------ESDIDLPIALRKRKRTCTRYSLSHFVSYD 191
               I+E+     P     +N+          +D+ +PIALRK  R+CT++ +S+F+SYD
Sbjct: 483 ---TILEQNQESNPRSESPSNSIQETKVYDTPNDLYMPIALRKGVRSCTQHPISNFISYD 542

Query: 192 KLSSQYRSFVVNL 195
           +LSS+Y +FV NL
Sbjct: 543 RLSSKYHAFVTNL 551

[Close]

BLAST of Moc10g14830 vs. ExPASy TrEMBL
Match: A0A5D3BQE1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00780 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.2e-06
Identity = 48/142 (33.80%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 88  LNPNPSQV--LNPTEILGPSNPLAIVPLQVYSRRNTEQVQ-------------ESEHISR 147
           + P PS V  ++P  I+ P+N    VP + Y RRN +  +             +S   SR
Sbjct: 359 IEPTPSTVSDIDPHPIILPTNQ---VPWKTYYRRNQKGSRVPYQSVACSNPRLQSSSRSR 418

Query: 148 TEIV------EKRFNDEPYITI-SANNESD-------------IDLPIALRKRKRTCTRY 195
           +++       EK   DE  + I ++NNE++             +DLPIALRK  R+CT+Y
Sbjct: 419 SDVAVLENVEEKNSGDETEVRIKTSNNEAEQGHTGKLDKYGPSLDLPIALRKGTRSCTKY 478

[Close]

BLAST of Moc10g14830 vs. ExPASy TrEMBL
Match: A0A6P6TQB4 (uncharacterized protein LOC113703474 OS=Coffea arabica OX=13443 GN=LOC113703474 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.2e-06
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 85  SPVLNPNPSQVLNPTEILG---PSNPLAIVPLQVYSRRNTEQVQESEHISRTEIVEKRFN 144
           SP + P PS +L   E+ G    +  L+   LQVYSRR+   V+++  + RT  +  + +
Sbjct: 5   SPPVLPVPSSLL--PELSGSPDSTTRLSRPNLQVYSRRS--MVEKAPDMLRTSPINSQSS 64

Query: 145 DEPYITISANNESDIDLPIALRKRKRTCTRYSLSHFVSYDKLSSQYRSFVVNL 195
           D P +T S  +    DLPIALRK KR CT + +S+FVSY +LS  Y SFV +L
Sbjct: 65  D-PGMTPSCES----DLPIALRKGKRHCTSHPISNFVSYSRLSLSYSSFVASL 108

[Close]

BLAST of Moc10g14830 vs. ExPASy TrEMBL
Match: A0A6P6T1M1 (uncharacterized protein LOC113697007 isoform X1 OS=Coffea arabica OX=13443 GN=LOC113697007 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.2e-06
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 85  SPVLNPNPSQVLNPTEILG---PSNPLAIVPLQVYSRRNTEQVQESEHISRTEIVEKRFN 144
           SP + P PS +L   E+ G    +  L+   LQVYSRR+   V+++  + RT  +  + +
Sbjct: 362 SPPVLPVPSSLL--PELSGSPDSTTRLSHPNLQVYSRRS--MVEKAPDMLRTSPINSQSS 421

Query: 145 DEPYITISANNESDIDLPIALRKRKRTCTRYSLSHFVSYDKLSSQYRSFVVNL 195
           D P +T S  +    DLPIALRK KR CT + +S+FVSY +LS  Y SFV +L
Sbjct: 422 D-PGMTPSCES----DLPIALRKGKRHCTSHPISNFVSYSRLSLSYSSFVASL 465

The following BLAST results are available for this feature:

BLAST of Moc10g14830 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN79660.1	6.6e-06	37.33	hypothetical protein VITISV_004324 [Vitis vinifera]	[more]
RVW30881.1	1.5e-05	33.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
XP_027072218.1	1.9e-05	41.59	uncharacterized protein LOC113697007 isoform X1 [Coffea arabica]	[more]
TYK01384.1	1.9e-05	33.80	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa]	[more]
XP_027080654.1	1.9e-05	41.59	uncharacterized protein LOC113703474 [Coffea arabica]	[more]

BLAST of Moc10g14830 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g14830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5C483	3.2e-06	37.33	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A438D633	7.1e-06	33.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A5D3BQE1	9.2e-06	33.80	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A6P6TQB4	9.2e-06	41.59	uncharacterized protein LOC113703474 OS=Coffea arabica OX=13443 GN=LOC113703474 ...	[more]
A0A6P6T1M1	9.2e-06	41.59	uncharacterized protein LOC113697007 isoform X1 OS=Coffea arabica OX=13443 GN=LO...	[more]

BLAST of Moc10g14830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g14830.1	Moc10g14830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process