Moc10g14310 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g14310
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr10: 10977873 .. 10979448 (+)
RNA-Seq ExpressionMoc10g14310
SyntenyMoc10g14310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATTGGTGAGCAGTCAAGTTTCGAAGGAATTATGAGGTTCGATGGAGCCAACTTTGGGTATTGGAAAATGCAGATTAAGGATTACTTAACCTGCAAAAAGGTGCACAAAGCGTTGAAGGAACGACCAGCTGGAATGAAGCTTGAAGATTGGGAAGATATGAATGAACAGGCAGTTGCAATTATCAGGTTGTGTCTATCAATGAATGTAGCGAGTCTCGTGGCAAATGAGACAACGGCGATAGGTCTGATGAATGCACTGACGAACGGGTATGAAAAACCATCTGCCAATAATAAGGTATATCTTGTTAGAAGATATTTTAACATTCGTATGGATGAGAATGCTTCTGTGAATTCCCATATAAATGAAGTCACTAATTTAATCAATCAGTTAGCGTCTCGGAATATTACATTTAGTGATGAGGTGAATGCTATTTTATTGTTGACTTCTTTGCCTGAAAGTTGGGAAACAATGAAGACGACTGTGTCTAATTCATTAGGAGATAAGAGTTTAAAATTTACAGAAATTTGTGATGCTGCAATTGCTGAGGAAATTTACAGGAAAGAGAGTGGAAAAGAATCCACTTCTAGTTCTGCATCTGGCTCAGCATTGGCTGTTCAGAAAGGTAAAGAAAAGGTTGAGTATGATGATAGACAACATAGAAATAGCAGGAGAAATGGGAATGGTGAGATTGAATGTTATTACTGCCACAAGAAGGGCCACTATAAGAGGCACTGTAGAAAATTGAGAGGATATGAAAAAGCTGGATGCAAATGCAAATGCAGTTGTGCATGATGCTCTTGTGTGTGTTGAGAGTAACACAATGTCGGTGGACCAGTCATCAGAATGGGTAGTAGACAGTGCAGCTTAAGTACACATCTCTTCAGATAGGAGATTGTTCACATCTTTCACTGCAGGCAACTATGGCATGGTGAGGATGGGAAATGGTAGGCTCTCCAAGACTAGAGGAATTGGAAATATCAGTCTGAAGACCGATAGTGGGACTGAGTTGGTTCTGCGAGATGTCAGGTATGTACCCAGCATCAGAATGAATTTAATATCTGCAGGGAAGTTGGATGACGATGGGTACAGAAGTGAGTTTGCTGGAAATATGTGGAAACTCACTAGAGGATCCGAGTTGCTGGTTGTTGGCCACAGGACATCTACAGTGTACACAGTGAGGTTTGATGTTGCCAAAGGATCAGAGAGACAGAGGATGCATAGAGCTGCAAATGGTTTAGATGGAGACGGGATAAAACCAACAGCATTGACAACCAAGATAGATCCATCAGTTCATGTTCAACAATTGGGAGACAAGGATAAGGAAAAGAAAAAGAGTTTAGTTGGTTGTCAGGTGATAGCCCCAGTTGTTAGACGGTTCAACGAATTGATGAAGTCGCATAGGCGAAAAGATGCATCGAAGAGGAAAACTACAGTTGGTGCTGAGGTCGAGGTTGAAGTCTCTAGCTTGGTAACAAACTTAAGTGGGAGTGTCAATTCATCGAAGAAGAATTCTTTCTTTGGGAGTCGTTGGTCACGATCGAAGAAGGAAGCGTTGGGAGGTACCACTTAG

mRNA sequence

ATGGGAATTGGTGAGCAGTCAAGTTTCGAAGGAATTATGAGGTTCGATGGAGCCAACTTTGGGTATTGGAAAATGCAGATTAAGGATTACTTAACCTGCAAAAAGGTGCACAAAGCGTTGAAGGAACGACCAGCTGGAATGAAGCTTGAAGATTGGGAAGATATGAATGAACAGGCAGTTGCAATTATCAGGTTGTGTCTATCAATGAATGTAGCGAGTCTCGTGGCAAATGAGACAACGGCGATAGGTCTGATGAATGCACTGACGAACGGGTATGAAAAACCATCTGCCAATAATAAGGTATATCTTGTTAGAAGATATTTTAACATTCGTATGGATGAGAATGCTTCTGTGAATTCCCATATAAATGAAGTCACTAATTTAATCAATCAGTTAGCGTCTCGGAATATTACATTTAGTGATGAGGTGAATGCTATTTTATTGTTGACTTCTTTGCCTGAAAGTTGGGAAACAATGAAGACGACTGTGTCTAATTCATTAGGAGATAAGAGTTTAAAATTTACAGAAATTTGTGATGCTGCAATTGCTGAGGAAATTTACAGGAAAGAGAGTGGAAAAGAATCCACTTCTAGTTCTGCATCTGGCTCAGCATTGGCTGTTCAGAAAGGTAAAGAAAAGGTTGAGTATGATGATAGACAACATAGAAATAGCAGGAGAAATGGGAATGGTGAGATTGAATGTTATTACTGCCACAAGAAGGGCCACTATAAGAGGCACTGTAGAAAATTGAGAGGATATGAAAAAGCTGGATGCAAATGCAAATGCAGTTGCAACTATGGCATGGTGAGGATGGGAAATGGTAGGCTCTCCAAGACTAGAGGAATTGGAAATATCAGTCTGAAGACCGATAGTGGGACTGAGTTGGTTCTGCGAGATGTCAGGTATGTACCCAGCATCAGAATGAATTTAATATCTGCAGGGAAGTTGGATGACGATGGGTACAGAAGTGAGTTTGCTGGAAATATGTGGAAACTCACTAGAGGATCCGAGTTGCTGGTTGTTGGCCACAGGACATCTACAGTGTACACAGTGAGGTTTGATGTTGCCAAAGGATCAGAGAGACAGAGGATGCATAGAGCTGCAAATGGTTTAGATGGAGACGGGATAAAACCAACAGCATTGACAACCAAGATAGATCCATCAGTTCATGTTCAACAATTGGGAGACAAGGATAAGGAAAAGAAAAAGAGTTTAGTTGGTTGTCAGGTGATAGCCCCAGTTGTTAGACGGTTCAACGAATTGATGAAGTCGCATAGGCGAAAAGATGCATCGAAGAGGAAAACTACAGTTGGTGCTGAGGTCGAGGTTGAAGTCTCTAGCTTGGTAACAAACTTAAGTGGGAGTGTCAATTCATCGAAGAAGAATTCTTTCTTTGGGAGTCGTTGGTCACGATCGAAGAAGGAAGCGTTGGGAGGTACCACTTAG

Coding sequence (CDS)

ATGGGAATTGGTGAGCAGTCAAGTTTCGAAGGAATTATGAGGTTCGATGGAGCCAACTTTGGGTATTGGAAAATGCAGATTAAGGATTACTTAACCTGCAAAAAGGTGCACAAAGCGTTGAAGGAACGACCAGCTGGAATGAAGCTTGAAGATTGGGAAGATATGAATGAACAGGCAGTTGCAATTATCAGGTTGTGTCTATCAATGAATGTAGCGAGTCTCGTGGCAAATGAGACAACGGCGATAGGTCTGATGAATGCACTGACGAACGGGTATGAAAAACCATCTGCCAATAATAAGGTATATCTTGTTAGAAGATATTTTAACATTCGTATGGATGAGAATGCTTCTGTGAATTCCCATATAAATGAAGTCACTAATTTAATCAATCAGTTAGCGTCTCGGAATATTACATTTAGTGATGAGGTGAATGCTATTTTATTGTTGACTTCTTTGCCTGAAAGTTGGGAAACAATGAAGACGACTGTGTCTAATTCATTAGGAGATAAGAGTTTAAAATTTACAGAAATTTGTGATGCTGCAATTGCTGAGGAAATTTACAGGAAAGAGAGTGGAAAAGAATCCACTTCTAGTTCTGCATCTGGCTCAGCATTGGCTGTTCAGAAAGGTAAAGAAAAGGTTGAGTATGATGATAGACAACATAGAAATAGCAGGAGAAATGGGAATGGTGAGATTGAATGTTATTACTGCCACAAGAAGGGCCACTATAAGAGGCACTGTAGAAAATTGAGAGGATATGAAAAAGCTGGATGCAAATGCAAATGCAGTTGCAACTATGGCATGGTGAGGATGGGAAATGGTAGGCTCTCCAAGACTAGAGGAATTGGAAATATCAGTCTGAAGACCGATAGTGGGACTGAGTTGGTTCTGCGAGATGTCAGGTATGTACCCAGCATCAGAATGAATTTAATATCTGCAGGGAAGTTGGATGACGATGGGTACAGAAGTGAGTTTGCTGGAAATATGTGGAAACTCACTAGAGGATCCGAGTTGCTGGTTGTTGGCCACAGGACATCTACAGTGTACACAGTGAGGTTTGATGTTGCCAAAGGATCAGAGAGACAGAGGATGCATAGAGCTGCAAATGGTTTAGATGGAGACGGGATAAAACCAACAGCATTGACAACCAAGATAGATCCATCAGTTCATGTTCAACAATTGGGAGACAAGGATAAGGAAAAGAAAAAGAGTTTAGTTGGTTGTCAGGTGATAGCCCCAGTTGTTAGACGGTTCAACGAATTGATGAAGTCGCATAGGCGAAAAGATGCATCGAAGAGGAAAACTACAGTTGGTGCTGAGGTCGAGGTTGAAGTCTCTAGCTTGGTAACAAACTTAAGTGGGAGTGTCAATTCATCGAAGAAGAATTCTTTCTTTGGGAGTCGTTGGTCACGATCGAAGAAGGAAGCGTTGGGAGGTACCACTTAG

Protein sequence

MGIGEQSSFEGIMRFDGANFGYWKMQIKDYLTCKKVHKALKERPAGMKLEDWEDMNEQAVAIIRLCLSMNVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTNLINQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIYRKESGKESTSSSASGSALAVQKGKEKVEYDDRQHRNSRRNGNGEIECYYCHKKGHYKRHCRKLRGYEKAGCKCKCSCNYGMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDDDGYRSEFAGNMWKLTRGSELLVVGHRTSTVYTVRFDVAKGSERQRMHRAANGLDGDGIKPTALTTKIDPSVHVQQLGDKDKEKKKSLVGCQVIAPVVRRFNELMKSHRRKDASKRKTTVGAEVEVEVSSLVTNLSGSVNSSKKNSFFGSRWSRSKKEALGGTT
Homology
BLAST of Moc10g14310 vs. NCBI nr
Match: KAE8660210.1 (F-box family protein [Hibiscus syriacus])

HSP 1 Score: 259.2 bits (661), Expect = 6.9e-65
Identity = 154/391 (39.39%), Postives = 225/391 (57.54%), Query Frame = 0

Query: 3   IGEQSSFEG---IMRFDGANFGYWKMQIKDYLTCKKVHKALK-ERPAGMKLEDWEDMNEQ 62
           +G  ++ EG   I +FDGA+FG+WKMQI+D+L  K +++ L  ++P GMK EDW  ++ Q
Sbjct: 474 VGAMAADEGKVKIEKFDGADFGFWKMQIEDFLYQKNLYQPLSGKQPEGMKDEDWALLDRQ 533

Query: 63  AVAIIRLCLSMNVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASV 122
           A+ +IRL LS NVA  +A E T  GLM AL++ YEKPSA+NKV+L+RR FN+RM E ASV
Sbjct: 534 ALGVIRLTLSRNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMAEGASV 593

Query: 123 NSHINEVTNLINQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEIC 182
             H+NE+  +  QL+S  I F DEV A++LL+SLP+SW    T VS+S G+  LKF ++ 
Sbjct: 594 AQHLNELNTITTQLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSSSGNSKLKFDDVR 653

Query: 183 DAAIAEEIYRKESGKESTSSSASGSALAVQKGKEKVEYDDRQHRNSRRNGNGEIECYYCH 242
           D  ++EEI R+ESG+ STSS+    +      +       +  R   R GN +  CY C 
Sbjct: 654 DLVLSEEIRRRESGEASTSSALHTESRGRTSERNSNRGRSKSRRGKSRTGNKDFTCYNCG 713

Query: 243 KKGHYKRHCR---KLRGYEKA-------------------------------GCKCK--- 302
           KKGH+KR CR   K  G +++                                  C+   
Sbjct: 714 KKGHFKRDCRAPKKNTGAQESANMTEETGDAMILSVNSPIESWILDSGASFHSTPCREIM 773

Query: 303 ---CSCNYGMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDD 350
               S ++G V + +    K  G G+I LK  + T   L  VR++P ++ NLIS G+LD 
Sbjct: 774 ENYVSGDFGKVHLADDETLKIVGKGDIRLKLPNQTTWKLTGVRHIPGLKRNLISVGQLDG 833

BLAST of Moc10g14310 vs. NCBI nr
Match: KAE8714488.1 (hypothetical protein F3Y22_tig00110195pilonHSYRG00090 [Hibiscus syriacus])

HSP 1 Score: 257.3 bits (656), Expect = 2.6e-64
Identity = 154/383 (40.21%), Postives = 221/383 (57.70%), Query Frame = 0

Query: 12  IMRFDGANFGYWKMQIKDYLTCKKVHKALK-ERPAGMKLEDWEDMNEQAVAIIRLCLSMN 71
           I +FDGA+FG+WKMQI+D+L  K +++ L  ++P GMK EDW  ++ QA+ +IRL LS N
Sbjct: 10  IEKFDGADFGFWKMQIEDFLYQKNLYQPLSGKQPEGMKDEDWALLDRQALGVIRLTLSRN 69

Query: 72  VASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTNLIN 131
           VA  +A E T  GLM AL++ YEKPSA+NKV+L+RR FN+RM E ASV  H+NE+  +  
Sbjct: 70  VAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMTEGASVAQHLNELNTITT 129

Query: 132 QLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIYRKE 191
           QL+S  I F DEV A++LL+SLP+SW    T VS+S G+  LKF ++ D  ++EEI R+E
Sbjct: 130 QLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSSSGNIKLKFDDVRDLVLSEEIRRRE 189

Query: 192 SGKESTSSSASGSALAVQKGKEKVEYDDRQHRNSR----RNGNGEIECYYCHKKGHYKRH 251
           SG+ STSS+    +    +G+    Y +R    SR    R G  +  CY C KKGH+KR 
Sbjct: 190 SGEASTSSALHTES----RGRTSERYSNRGRSKSRREKSRTGKKDFTCYNCGKKGHFKRD 249

Query: 252 CRKLR----------------------------------GYEKAGCKCK------CSCNY 311
           CR L+                                  G       C+       S ++
Sbjct: 250 CRALKKDTGAQESANVTEETGDAMILSVNSPIESWILDSGASFHSTPCQEIMENYVSGDF 309

Query: 312 GMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDDDGYRSEFA 350
           G V + +    K  G G+I LK  + T   L  VR++P ++ NLIS G+LD +GY + F+
Sbjct: 310 GKVHLADDETLKIVGKGDIRLKLPNQTTWKLTGVRHIPGLKRNLISVGQLDGEGYSTTFS 369

BLAST of Moc10g14310 vs. NCBI nr
Match: TKS02608.1 (hypothetical protein D5086_0000161380 [Populus alba])

HSP 1 Score: 254.6 bits (649), Expect = 1.7e-63
Identity = 150/385 (38.96%), Postives = 219/385 (56.88%), Query Frame = 0

Query: 11  GIMRFDGANFGYWKMQIKDYLTCKKVH-KALKERPAGMKLEDWEDMNEQAVAIIRLCLSM 70
           GI +FDG +FGYWKMQI+DYL  KK+H   L  +P  M+ E+W+ ++ Q + IIRL LS 
Sbjct: 9   GIEKFDGTDFGYWKMQIEDYLYGKKLHLPLLGSKPEKMEAEEWQLLDRQVLGIIRLSLSR 68

Query: 71  NVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTNLI 130
            VA  V  E +   LM AL+  YEKPSANNKV+L+++ FN++M EN SV  H+N    + 
Sbjct: 69  RVAHNVTKEKSTAKLMEALSGMYEKPSANNKVHLMKKLFNLKMVENTSVTQHLNNFNTIT 128

Query: 131 NQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIYRK 190
           NQL+S  I F DE+ A++LL SLP SWE M+T VSNS G   LK+ +I D  +AEE+ RK
Sbjct: 129 NQLSSVEIEFDDEIRALILLASLPSSWEGMRTAVSNSAGKSKLKYDDIRDLILAEEVRRK 188

Query: 191 ESGKESTSSSASGSALAV-------QKGKEKVEYDDRQHRNSRRNGNGEIECYYCHKKGH 250
           +SG+    SS+SGSAL +        +G  +     R    S+     ++EC+ C K GH
Sbjct: 189 DSGE----SSSSGSALNINTRGRRHDRGSSRGRSKSRYRSKSKFGSRKQVECWNCGKPGH 248

Query: 251 YKRHCRKLRGYE----------------------------KAGCKCKCS----------- 310
           + R+C K +  E                             +G    C+           
Sbjct: 249 FSRNCTKPKKPEADSANATTDEVQDALILVVQSQIDEWILDSGASFHCTPHNEMLQNYVG 308

Query: 311 CNYGMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDDDGYRS 349
            ++G+V + +G   K  GIG++ +KT +G+   L++VR+VP ++  LIS G+LDD G+  
Sbjct: 309 GDHGVVYLADGTPLKIVGIGDVQIKTMNGSIWTLQNVRHVPELKKKLISVGQLDDSGHSI 368

BLAST of Moc10g14310 vs. NCBI nr
Match: TKS09800.1 (hypothetical protein D5086_0000089010 [Populus alba])

HSP 1 Score: 254.6 bits (649), Expect = 1.7e-63
Identity = 150/385 (38.96%), Postives = 219/385 (56.88%), Query Frame = 0

Query: 11  GIMRFDGANFGYWKMQIKDYLTCKKVH-KALKERPAGMKLEDWEDMNEQAVAIIRLCLSM 70
           GI +FDG +FGYWKMQI+DYL  KK+H   L  +P  M+ E+W+ ++ Q + IIRL LS 
Sbjct: 9   GIEKFDGTDFGYWKMQIEDYLYGKKLHLPLLGSKPEKMEAEEWQLLDRQVLGIIRLSLSR 68

Query: 71  NVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTNLI 130
            VA  V  E +   LM AL+  YEKPSANNKV+L+++ FN++M EN SV  H+N    + 
Sbjct: 69  RVAHNVTKEKSTAKLMEALSGMYEKPSANNKVHLMKKLFNLKMVENTSVTQHLNNFNTIT 128

Query: 131 NQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIYRK 190
           NQL+S  I F DE+ A++LL SLP SWE M+T VSNS G   LK+ +I D  +AEE+ RK
Sbjct: 129 NQLSSVEIEFDDEIRALILLASLPSSWEGMRTAVSNSAGKSKLKYDDIRDLILAEEVRRK 188

Query: 191 ESGKESTSSSASGSALAV-------QKGKEKVEYDDRQHRNSRRNGNGEIECYYCHKKGH 250
           +SG+    SS+SGSAL +        +G  +     R    S+     ++EC+ C K GH
Sbjct: 189 DSGE----SSSSGSALNINTRGRRHDRGSSRGRSKSRYRSKSKFGSRKQVECWNCGKPGH 248

Query: 251 YKRHCRKLRGYE----------------------------KAGCKCKCS----------- 310
           + R+C K +  E                             +G    C+           
Sbjct: 249 FSRNCTKPKKPEADSANATTDEVQDALILAVQSQIDEWILDSGASFHCTPHNEMLQNYVG 308

Query: 311 CNYGMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDDDGYRS 349
            ++G+V + +G   K  GIG++ +KT +G+   L++VR+VP ++  LIS G+LDD G+  
Sbjct: 309 GDHGVVYLADGTPLKIVGIGDVQIKTMNGSIWTLQNVRHVPELKKKLISVGQLDDSGHSI 368

BLAST of Moc10g14310 vs. NCBI nr
Match: KAE8654393.1 (hypothetical protein F3Y22_tig00117048pilonHSYRG00173 [Hibiscus syriacus])

HSP 1 Score: 253.8 bits (647), Expect = 2.9e-63
Identity = 151/359 (42.06%), Postives = 218/359 (60.72%), Query Frame = 0

Query: 3   IGEQSSFEG---IMRFDGANFGYWKMQIKDYLTCKKVHKALKER-PAGMKLEDWEDMNEQ 62
           +G  ++ EG   I +FDGA+FG+WKMQI+D+L  K +++ L E+ P GMK EDW  ++ Q
Sbjct: 112 VGAMAADEGKVKIEKFDGADFGFWKMQIEDFLYQKNLYQPLSEKQPDGMKNEDWALLDRQ 171

Query: 63  AVAIIRLCLSMNVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASV 122
           A+ +IRL LS NVA  +A E T  GLM AL++ YEKPSA+NKV+L+RR FN+RM E ASV
Sbjct: 172 ALRVIRLMLSRNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMTEGASV 231

Query: 123 NSHINEVTNLINQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEIC 182
             H+NE+  +  QL+S  I F DEV A++LL+SLP+SW      VS+S G+  LKF  + 
Sbjct: 232 AQHLNELNTITTQLSSVEIKFDDEVRALILLSSLPDSWNATVIAVSSSSGNSKLKFDNVR 291

Query: 183 DAAIAEEIYRKESGKESTSSSASGSALAVQKGKEKVEYDDRQHRNSR----RNGNGEIEC 242
           D  ++EEI R+ESG+ STSS+    +    +G+      +R    SR    R G  +  C
Sbjct: 292 DLVLSEEIRRRESGEASTSSALHTDS----RGRTSERNSNRGRSKSRTGKSRTGKKDFTC 351

Query: 243 YYCHKKGHYKRHCR--KLRGYEKAGCKCKCSCNYGMVRMGN--GRLSKTRGIGNISLKTD 302
           Y C KKGH+KR CR  K     +          + M+   N      K  G G+I LK  
Sbjct: 352 YNCGKKGHFKRDCRAPKKNTGPQESTNVIEETGHAMILSVNTDDETLKIVGKGDIRLKLP 411

Query: 303 SGTELVLRDVRYVPSIRMNLISAGKLDDDGYRSEFAGNMWKLTRGSELLVVGHRTSTVY 350
           + T   L+ VR++P ++ NLIS G+LD +G+ + F+G  WK+T+G+ ++    +T T+Y
Sbjct: 412 NQTTWTLKGVRHIPGLKRNLISVGQLDGEGFSTTFSGCEWKITKGALVISRDKKTGTLY 466

BLAST of Moc10g14310 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.7e-45
Identity = 125/407 (30.71%), Postives = 202/407 (49.63%), Query Frame = 0

Query: 12  IMRFDGAN-FGYWKMQIKDYLTCKKVHKAL---KERPAGMKLEDWEDMNEQAVAIIRLCL 71
           + +F+G N F  W+ +++D L  + +HK L    ++P  MK EDW D++E+A + IRL L
Sbjct: 8   VAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHL 67

Query: 72  SMNVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTN 131
           S +V + + +E TA G+   L + Y   +  NK+YL ++ + + M E  +  SH+N    
Sbjct: 68  SDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNG 127

Query: 132 LINQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIY 191
           LI QLA+  +   +E  AILLL SLP S++ + TT+ +  G  +++  ++  A +  E  
Sbjct: 128 LITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKM 187

Query: 192 RKESGKESTSSSASGSALAVQKGKEKVEYDDRQHRNSRRNGNGEIECYYCHKKGHYKRHC 251
           RK+   +  +    G   + Q+          + ++  R+ +    CY C++ GH+KR C
Sbjct: 188 RKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDC 247

Query: 252 ---RKLRGYEKAGCK--------------------------------------------- 311
              RK +G E +G K                                             
Sbjct: 248 PNPRKGKG-ETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHA 307

Query: 312 -------CK-CSCNYGMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLI 359
                  C+  + ++G V+MGN   SK  GIG+I +KT+ G  LVL+DVR+VP +RMNLI
Sbjct: 308 TPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLI 367

BLAST of Moc10g14310 vs. ExPASy TrEMBL
Match: A0A6A2WXJ4 (F-box family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116958pilonHSYRG00301 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.3e-65
Identity = 154/391 (39.39%), Postives = 225/391 (57.54%), Query Frame = 0

Query: 3   IGEQSSFEG---IMRFDGANFGYWKMQIKDYLTCKKVHKALK-ERPAGMKLEDWEDMNEQ 62
           +G  ++ EG   I +FDGA+FG+WKMQI+D+L  K +++ L  ++P GMK EDW  ++ Q
Sbjct: 474 VGAMAADEGKVKIEKFDGADFGFWKMQIEDFLYQKNLYQPLSGKQPEGMKDEDWALLDRQ 533

Query: 63  AVAIIRLCLSMNVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASV 122
           A+ +IRL LS NVA  +A E T  GLM AL++ YEKPSA+NKV+L+RR FN+RM E ASV
Sbjct: 534 ALGVIRLTLSRNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMAEGASV 593

Query: 123 NSHINEVTNLINQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEIC 182
             H+NE+  +  QL+S  I F DEV A++LL+SLP+SW    T VS+S G+  LKF ++ 
Sbjct: 594 AQHLNELNTITTQLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSSSGNSKLKFDDVR 653

Query: 183 DAAIAEEIYRKESGKESTSSSASGSALAVQKGKEKVEYDDRQHRNSRRNGNGEIECYYCH 242
           D  ++EEI R+ESG+ STSS+    +      +       +  R   R GN +  CY C 
Sbjct: 654 DLVLSEEIRRRESGEASTSSALHTESRGRTSERNSNRGRSKSRRGKSRTGNKDFTCYNCG 713

Query: 243 KKGHYKRHCR---KLRGYEKA-------------------------------GCKCK--- 302
           KKGH+KR CR   K  G +++                                  C+   
Sbjct: 714 KKGHFKRDCRAPKKNTGAQESANMTEETGDAMILSVNSPIESWILDSGASFHSTPCREIM 773

Query: 303 ---CSCNYGMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDD 350
               S ++G V + +    K  G G+I LK  + T   L  VR++P ++ NLIS G+LD 
Sbjct: 774 ENYVSGDFGKVHLADDETLKIVGKGDIRLKLPNQTTWKLTGVRHIPGLKRNLISVGQLDG 833

BLAST of Moc10g14310 vs. ExPASy TrEMBL
Match: A0A6A3BGE7 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110195pilonHSYRG00090 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.3e-64
Identity = 154/383 (40.21%), Postives = 221/383 (57.70%), Query Frame = 0

Query: 12  IMRFDGANFGYWKMQIKDYLTCKKVHKALK-ERPAGMKLEDWEDMNEQAVAIIRLCLSMN 71
           I +FDGA+FG+WKMQI+D+L  K +++ L  ++P GMK EDW  ++ QA+ +IRL LS N
Sbjct: 10  IEKFDGADFGFWKMQIEDFLYQKNLYQPLSGKQPEGMKDEDWALLDRQALGVIRLTLSRN 69

Query: 72  VASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTNLIN 131
           VA  +A E T  GLM AL++ YEKPSA+NKV+L+RR FN+RM E ASV  H+NE+  +  
Sbjct: 70  VAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMTEGASVAQHLNELNTITT 129

Query: 132 QLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIYRKE 191
           QL+S  I F DEV A++LL+SLP+SW    T VS+S G+  LKF ++ D  ++EEI R+E
Sbjct: 130 QLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSSSGNIKLKFDDVRDLVLSEEIRRRE 189

Query: 192 SGKESTSSSASGSALAVQKGKEKVEYDDRQHRNSR----RNGNGEIECYYCHKKGHYKRH 251
           SG+ STSS+    +    +G+    Y +R    SR    R G  +  CY C KKGH+KR 
Sbjct: 190 SGEASTSSALHTES----RGRTSERYSNRGRSKSRREKSRTGKKDFTCYNCGKKGHFKRD 249

Query: 252 CRKLR----------------------------------GYEKAGCKCK------CSCNY 311
           CR L+                                  G       C+       S ++
Sbjct: 250 CRALKKDTGAQESANVTEETGDAMILSVNSPIESWILDSGASFHSTPCQEIMENYVSGDF 309

Query: 312 GMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDDDGYRSEFA 350
           G V + +    K  G G+I LK  + T   L  VR++P ++ NLIS G+LD +GY + F+
Sbjct: 310 GKVHLADDETLKIVGKGDIRLKLPNQTTWKLTGVRHIPGLKRNLISVGQLDGEGYSTTFS 369

BLAST of Moc10g14310 vs. ExPASy TrEMBL
Match: A0A4U5QGR0 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000089010 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 8.2e-64
Identity = 150/385 (38.96%), Postives = 219/385 (56.88%), Query Frame = 0

Query: 11  GIMRFDGANFGYWKMQIKDYLTCKKVH-KALKERPAGMKLEDWEDMNEQAVAIIRLCLSM 70
           GI +FDG +FGYWKMQI+DYL  KK+H   L  +P  M+ E+W+ ++ Q + IIRL LS 
Sbjct: 9   GIEKFDGTDFGYWKMQIEDYLYGKKLHLPLLGSKPEKMEAEEWQLLDRQVLGIIRLSLSR 68

Query: 71  NVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTNLI 130
            VA  V  E +   LM AL+  YEKPSANNKV+L+++ FN++M EN SV  H+N    + 
Sbjct: 69  RVAHNVTKEKSTAKLMEALSGMYEKPSANNKVHLMKKLFNLKMVENTSVTQHLNNFNTIT 128

Query: 131 NQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIYRK 190
           NQL+S  I F DE+ A++LL SLP SWE M+T VSNS G   LK+ +I D  +AEE+ RK
Sbjct: 129 NQLSSVEIEFDDEIRALILLASLPSSWEGMRTAVSNSAGKSKLKYDDIRDLILAEEVRRK 188

Query: 191 ESGKESTSSSASGSALAV-------QKGKEKVEYDDRQHRNSRRNGNGEIECYYCHKKGH 250
           +SG+    SS+SGSAL +        +G  +     R    S+     ++EC+ C K GH
Sbjct: 189 DSGE----SSSSGSALNINTRGRRHDRGSSRGRSKSRYRSKSKFGSRKQVECWNCGKPGH 248

Query: 251 YKRHCRKLRGYE----------------------------KAGCKCKCS----------- 310
           + R+C K +  E                             +G    C+           
Sbjct: 249 FSRNCTKPKKPEADSANATTDEVQDALILAVQSQIDEWILDSGASFHCTPHNEMLQNYVG 308

Query: 311 CNYGMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDDDGYRS 349
            ++G+V + +G   K  GIG++ +KT +G+   L++VR+VP ++  LIS G+LDD G+  
Sbjct: 309 GDHGVVYLADGTPLKIVGIGDVQIKTMNGSIWTLQNVRHVPELKKKLISVGQLDDSGHSI 368

BLAST of Moc10g14310 vs. ExPASy TrEMBL
Match: A0A4U5PY83 (CCHC-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000161380 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 8.2e-64
Identity = 150/385 (38.96%), Postives = 219/385 (56.88%), Query Frame = 0

Query: 11  GIMRFDGANFGYWKMQIKDYLTCKKVH-KALKERPAGMKLEDWEDMNEQAVAIIRLCLSM 70
           GI +FDG +FGYWKMQI+DYL  KK+H   L  +P  M+ E+W+ ++ Q + IIRL LS 
Sbjct: 9   GIEKFDGTDFGYWKMQIEDYLYGKKLHLPLLGSKPEKMEAEEWQLLDRQVLGIIRLSLSR 68

Query: 71  NVASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTNLI 130
            VA  V  E +   LM AL+  YEKPSANNKV+L+++ FN++M EN SV  H+N    + 
Sbjct: 69  RVAHNVTKEKSTAKLMEALSGMYEKPSANNKVHLMKKLFNLKMVENTSVTQHLNNFNTIT 128

Query: 131 NQLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIYRK 190
           NQL+S  I F DE+ A++LL SLP SWE M+T VSNS G   LK+ +I D  +AEE+ RK
Sbjct: 129 NQLSSVEIEFDDEIRALILLASLPSSWEGMRTAVSNSAGKSKLKYDDIRDLILAEEVRRK 188

Query: 191 ESGKESTSSSASGSALAV-------QKGKEKVEYDDRQHRNSRRNGNGEIECYYCHKKGH 250
           +SG+    SS+SGSAL +        +G  +     R    S+     ++EC+ C K GH
Sbjct: 189 DSGE----SSSSGSALNINTRGRRHDRGSSRGRSKSRYRSKSKFGSRKQVECWNCGKPGH 248

Query: 251 YKRHCRKLRGYE----------------------------KAGCKCKCS----------- 310
           + R+C K +  E                             +G    C+           
Sbjct: 249 FSRNCTKPKKPEADSANATTDEVQDALILVVQSQIDEWILDSGASFHCTPHNEMLQNYVG 308

Query: 311 CNYGMVRMGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDDDGYRS 349
            ++G+V + +G   K  GIG++ +KT +G+   L++VR+VP ++  LIS G+LDD G+  
Sbjct: 309 GDHGVVYLADGTPLKIVGIGDVQIKTMNGSIWTLQNVRHVPELKKKLISVGQLDDSGHSI 368

BLAST of Moc10g14310 vs. ExPASy TrEMBL
Match: A0A6A3BK95 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110186pilonHSYRG00194 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.4e-63
Identity = 150/379 (39.58%), Postives = 218/379 (57.52%), Query Frame = 0

Query: 12  IMRFDGANFGYWKMQIKDYLTCKKVHKALK-ERPAGMKLEDWEDMNEQAVAIIRLCLSMN 71
           I +FDGA+FG+WKMQI+ +L  K +++ L  ++P GMK EDW  ++ QA+ +IRL LS N
Sbjct: 10  IEKFDGADFGFWKMQIEYFLYQKNLYQPLSGKQPEGMKDEDWALLDRQALGVIRLTLSRN 69

Query: 72  VASLVANETTAIGLMNALTNGYEKPSANNKVYLVRRYFNIRMDENASVNSHINEVTNLIN 131
           VA  +A E T  GLM AL++ YEKPSA+NKV+L+RR FN+RM E ASV  H+NE+  +  
Sbjct: 70  VAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMAEGASVAQHLNELNTIAT 129

Query: 132 QLASRNITFSDEVNAILLLTSLPESWETMKTTVSNSLGDKSLKFTEICDAAIAEEIYRKE 191
           QL+S  I F DEV A++LL+SLP+SW    T VS+S G+  LKF ++ D  ++EEI R+E
Sbjct: 130 QLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSSSGNNKLKFDDVRDLVLSEEIRRRE 189

Query: 192 SGKESTSSSASGSALAVQKGKEKVEYDDRQHRNSRRNGNGEIECYYCHKKGHYKRHCR-- 251
           SG+ STSS+    +      +       +  R   R GN +  CY C KKGH+KR CR  
Sbjct: 190 SGEASTSSALHTESRGRTSERNSNRGRSKSRRGKSRTGNKDFTCYNCGKKGHFKRDCRAP 249

Query: 252 -KLRGYEKA-------------------------------GCKCK------CSCNYGMVR 311
            K  G +++                                  C+       S ++G V 
Sbjct: 250 KKNTGAQESANMTEETGDAMILSVNSPIESWILDSGASFHSTPCREIMENYVSGDFGKVH 309

Query: 312 MGNGRLSKTRGIGNISLKTDSGTELVLRDVRYVPSIRMNLISAGKLDDDGYRSEFAGNMW 350
           + +    K  G G+I LK  + T   L  VR++P ++ NLIS G+LD +GY + F+G  W
Sbjct: 310 LADDETLKIVGKGDIRLKLPNQTTWKLTGVRHIPGLKRNLISVGQLDGEGYSTTFSGCEW 369

BLAST of Moc10g14310 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 8.5e-13
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 0

Query: 14  RFDGANFGYWKMQIKDYLTCKKVHKALKERPAGMKLEDWEDMNEQAVAIIRLCLSMNVAS 73
           + DG ++ + +M+I+DYL  KK+H+ L ++   M  +DW  +  Q + +IRL +S N+A 
Sbjct: 8   KVDGTSYSFCRMKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAH 67

Query: 74  LVANETTAIGLMNALTNGYEKPSANNKV 102
            VA E +  GLM  L++ Y+KPS NN V
Sbjct: 68  NVAKEKSPDGLMKVLSDIYKKPSTNNTV 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8660210.16.9e-6539.39F-box family protein [Hibiscus syriacus][more]
KAE8714488.12.6e-6440.21hypothetical protein F3Y22_tig00110195pilonHSYRG00090 [Hibiscus syriacus][more]
TKS02608.11.7e-6338.96hypothetical protein D5086_0000161380 [Populus alba][more]
TKS09800.11.7e-6338.96hypothetical protein D5086_0000089010 [Populus alba][more]
KAE8654393.12.9e-6342.06hypothetical protein F3Y22_tig00117048pilonHSYRG00173 [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
P109783.7e-4530.71Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A6A2WXJ43.3e-6539.39F-box family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116958pilonHSY... [more]
A0A6A3BGE71.3e-6440.21Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110195pilon... [more]
A0A4U5QGR08.2e-6438.96Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000089010 PE=4 SV=1[more]
A0A4U5PY838.2e-6438.96CCHC-type domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000161380... [more]
A0A6A3BK951.4e-6339.58Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110186pilon... [more]
Match NameE-valueIdentityDescription
AT3G29785.18.5e-1339.77unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 52..190
e-value: 1.8E-27
score: 95.8
NoneNo IPR availableGENE3D4.10.60.10coord: 206..257
e-value: 6.8E-6
score: 27.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 210..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 457..481
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 11..261
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 11..261
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 234..249
score: 9.257132
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 217..254

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g14310.1Moc10g14310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding