Moc10g14020 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g14020
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotransposable element Tf2
Location	chr10: 10745833 .. 10746959 (+)
RNA-Seq Expression	Moc10g14020
Synteny	Moc10g14020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTGTCCAAAAGAGGGGTCAACAACCCAAAAGGGAAAGGGAAAGCGCCCGGAGTCTTCTACTCCGTCCGTCAGAACATTAAGGGGTAACAACCCATTCTATTCTAAAGTACTAAAATCTAAGGCTTTTCAACCTTACCCTGAGATTAAGGGTTATCATGCCAAGACTGAAATAGTTGTGGTTATCATCGAGCTTGAATACGACAGTATGTCGGTACTGGGATATGTTCAATCGTTTATCCTATGGGATTCAATTTCAACTCGAATGAGTGTCAAAAGAATCGAAGATTCTATGATTTCATCCTTGTTGATACAAAATCGGTGGAGATACTCCACACTCCAGATTGTAATGATTCATCAAAGATCATCTTTTCTAAGATGAAAATTCAAAAGGTCCTGACTCCCTCCCATTGGAATCAAGGACTTCATACGCCACGAGCTTTCTCTAAAAAGTTTGTGCCTTCGACTTTCTCATACAGAGATTACATCCATGCCTGGTACAACATACTCTGGTACCAAGCATACAACCATTCTTGGTTTATTGTGTTTTGTAAGAATGCTTACAAAATGCATTTTCCATTATGGTTTCAATCATGGTGGAATACCTTTGGGTTATGTAAGGAGATTTTTCCCTTACCCATCCAAAAATCTTATCATCTATTCAAAACGAATATTTATGGAACTTCCATATCTATTACGTTTCGATTCGCATTATATTTCAAAAGTCCATGGATCCTATGGAAATTCAAGCTAGGACAATCTGGAAATTTCAAAGCCTTAACCAAGGCAATATCCGTAAAATGGTGGGACAAGTACCAGTACAGCCATCTGCAGGAAGATAACCTGAAAGCATGGTTTGAGACTAATGTCCACCTCCAAGACATCAAGAGAAAAGAGCACGAGGAGCATGCACTTCTCCGTAACCACATTATGTCAGCTCTTGCAGGAACTCACTCAACCGAGGAGTTCAATTCACTAATTCAGCGCGTCGCTAATCGACTATCTGACGATAGCGCCAGTGAACGCGTAACCATATCCTCATCAAGTTCGTCAGTCGACGACGACTCTGATCAAGACACCGAAATAGACGTAAATGATTCGTTCTTAGATTCACAACCTTATTAA

mRNA sequence

ATGCTCTGTCCAAAAGAGGGGTCAACAACCCAAAAGGGAAAGGGAAAGCGCCCGGAGTCTTCTACTCCGTCCGTCAGAACATTAAGGGGTAACAACCCATTCTATTCTAAAGTACTAAAATCTAAGGCTTTTCAACCTTACCCTGAGATTAAGGGTTATCATGCCAAGACTGAAATAGTTGTGGTTATCATCGAGCTTGAATACGACAGACAATCTGGAAATTTCAAAGCCTTAACCAAGGCAATATCCGTAAAATGGTGGGACAAGTACCAGTACAGCCATCTGCAGGAAGATAACCTGAAAGCATGGTTTGAGACTAATGTCCACCTCCAAGACATCAAGAGAAAAGAGCACGAGGAGCATGCACTTCTCCGTAACCACATTATGTCAGCTCTTGCAGGAACTCACTCAACCGAGGAGTTCAATTCACTAATTCAGCGCGTCGCTAATCGACTATCTGACGATAGCGCCAGTGAACGCGTAACCATATCCTCATCAAGTTCGTCAGTCGACGACGACTCTGATCAAGACACCGAAATAGACGTAAATGATTCGTTCTTAGATTCACAACCTTATTAA

Coding sequence (CDS)

ATGCTCTGTCCAAAAGAGGGGTCAACAACCCAAAAGGGAAAGGGAAAGCGCCCGGAGTCTTCTACTCCGTCCGTCAGAACATTAAGGGGTAACAACCCATTCTATTCTAAAGTACTAAAATCTAAGGCTTTTCAACCTTACCCTGAGATTAAGGGTTATCATGCCAAGACTGAAATAGTTGTGGTTATCATCGAGCTTGAATACGACAGACAATCTGGAAATTTCAAAGCCTTAACCAAGGCAATATCCGTAAAATGGTGGGACAAGTACCAGTACAGCCATCTGCAGGAAGATAACCTGAAAGCATGGTTTGAGACTAATGTCCACCTCCAAGACATCAAGAGAAAAGAGCACGAGGAGCATGCACTTCTCCGTAACCACATTATGTCAGCTCTTGCAGGAACTCACTCAACCGAGGAGTTCAATTCACTAATTCAGCGCGTCGCTAATCGACTATCTGACGATAGCGCCAGTGAACGCGTAACCATATCCTCATCAAGTTCGTCAGTCGACGACGACTCTGATCAAGACACCGAAATAGACGTAAATGATTCGTTCTTAGATTCACAACCTTATTAA

Protein sequence

MLCPKEGSTTQKGKGKRPESSTPSVRTLRGNNPFYSKVLKSKAFQPYPEIKGYHAKTEIVVVIIELEYDRQSGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDIKRKEHEEHALLRNHIMSALAGTHSTEEFNSLIQRVANRLSDDSASERVTISSSSSSVDDDSDQDTEIDVNDSFLDSQPY

Homology

[Close]

BLAST of Moc10g14020 vs. NCBI nr
Match: KAA0066358.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 2.7e-28
Identity = 83/203 (40.89%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MLCPKEGSTTQKGKGKRPESSTPSVRTLRGNNPFYSKVLKSKAFQPYPEIKGYHAKTEIV 60
           +L P   +T  K       SS+ S  T   N   YS++++ K FQP P I GY  KT +V
Sbjct: 44  LLRPSRPTTPNKRAASPVASSSRSAIT--RNPSSYSQIVRPKVFQPRPPINGYFTKTTMV 103

Query: 61  VVIIELEYD-------RQSGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDI 120
            + IE E+D         SGNFKAL+ ++ +KWW K+ YSHL+ + +K WF+ N+HLQD+
Sbjct: 104 DLTIEPEFDGPSVQELGPSGNFKALSNSLRIKWWKKFNYSHLEVNKIKDWFKANIHLQDM 163

Query: 121 KRKEHEEHALLRNHIMSALAGTHSTEEFNSLIQRVANRLSDDSASERVTISSSSSSVDDD 180
            R+E E   L +N +MS LAG  + +EFNS++  V   LSDD  ++ +   +S +SV+D 
Sbjct: 164 TRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDD--NDDLPEDASPASVNDV 223

Query: 181 SDQDTE----IDVNDSFLDSQPY 193
            D D      +D+ND FLD QPY
Sbjct: 224 DDLDYNPYEGLDINDPFLDKQPY 242

[Close]

BLAST of Moc10g14020 vs. NCBI nr
Match: KAA0058437.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ96699.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-22
Identity = 76/218 (34.86%), Postives = 112/218 (51.38%), Query Frame = 0


Query: 7   GSTTQKGKGKRPESSTPSVRTLRGNNPFYSKVLKSKAFQPYPEIKGYHAKTEIVVVIIEL 66
           G TT   +   P +S+ S    R N   YS++++ K FQP P I GY  KT +V + IE 
Sbjct: 49  GPTTPNKRAASPTASSSSSAIPR-NPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEP 108

Query: 67  EYDRQS------------------------------GNFKALTKAISVKWWDKYQYSHLQ 126
           E+D  S                              G  ++  K++ +KWW+K+ YS+L+
Sbjct: 109 EFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKSFGKLQSPEKSLRIKWWEKFNYSYLE 168

Query: 127 EDNLKAWFETNVHLQDIKRKEHEEHALLRNHIMSALAGTHSTEEFNSLIQRVANRLSDDS 186
              +K WF+ N+HLQD+ R+E E   + +N IMS L G  + +EFNS++  V   LSDD+
Sbjct: 169 VKKIKDWFKANIHLQDMTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDN 228

Query: 187 ASERVTISSSSSSVDDDSDQD--TEIDVNDSFLDSQPY 193
                  S +S +  DD D D    +D+ND FLD+QPY
Sbjct: 229 NDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY 265

[Close]

BLAST of Moc10g14020 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-21
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 72  SGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDIKRKEHEEHALLRNHIMSA 131
           SGNFKAL+K++ +KWW+K+ YSHL+ + +K WF+ N+HLQD+ R+E E   L +N +MS 
Sbjct: 297 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 356

Query: 132 LAGTHSTEEFNSLIQRVANRLSDDSASERVTISSSSSSVDDDSDQD--TEIDVNDSFLDS 191
           LAG  + +EFNS++  V   LSDD+      +S +S +  DD D D    +D+ND FLD+
Sbjct: 357 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNADDFDYDPYEGLDINDPFLDT 416

Query: 192 QPY 193
           QPY
Sbjct: 417 QPY 419

[Close]

BLAST of Moc10g14020 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-21
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 72  SGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDIKRKEHEEHALLRNHIMSA 131
           SGNFKAL+K++ +KWW+K+ YSHL+ + +K WF+ N+HLQD+ R+E E   L +N +MS 
Sbjct: 297 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 356

Query: 132 LAGTHSTEEFNSLIQRVANRLSDDSASERVTISSSSSSVDDDSDQD--TEIDVNDSFLDS 191
           LAG  + +EFNS++  V   LSDD+      +S +S +  DD D D    +D+ND FLD+
Sbjct: 357 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDFDYDPYEGLDINDPFLDT 416

Query: 192 QPY 193
           QPY
Sbjct: 417 QPY 419

[Close]

BLAST of Moc10g14020 vs. NCBI nr
Match: TYK00926.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 2.4e-21
Identity = 60/153 (39.22%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 7   GSTTQKGKGKRPESSTPSVRTLRGNNPFYSKVLKSKAFQPYPEIKGYHAKTEIVVVIIEL 66
           G TT   +   P +S+ S   +  N   YS++++ K FQP P I GY  KT +V + IE 
Sbjct: 19  GPTTPNKRAASPVASS-SRSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEP 78

Query: 67  EYD-------RQSGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDIKRKEHE 126
           E+D         SG FKAL+K++ +KWW+K+ YSHL+ +    WF+ N+HLQD+ R+E E
Sbjct: 79  EFDGPSVQELGPSGIFKALSKSLRIKWWEKFNYSHLKVNQFNDWFKANIHLQDMTRQEDE 138

Query: 127 EHALLRNHIMSALAGTHSTEEFNSLIQRVANRL 153
              L ++ +MS  AG  + +EFNS++  V   L
Sbjct: 139 AFLLTKDAVMSTFAGASTQQEFNSVVNNVVVNL 170

[Close]

BLAST of Moc10g14020 vs. ExPASy TrEMBL
Match: A0A5A7VF67 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004240 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 83/203 (40.89%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MLCPKEGSTTQKGKGKRPESSTPSVRTLRGNNPFYSKVLKSKAFQPYPEIKGYHAKTEIV 60
           +L P   +T  K       SS+ S  T   N   YS++++ K FQP P I GY  KT +V
Sbjct: 44  LLRPSRPTTPNKRAASPVASSSRSAIT--RNPSSYSQIVRPKVFQPRPPINGYFTKTTMV 103

Query: 61  VVIIELEYD-------RQSGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDI 120
            + IE E+D         SGNFKAL+ ++ +KWW K+ YSHL+ + +K WF+ N+HLQD+
Sbjct: 104 DLTIEPEFDGPSVQELGPSGNFKALSNSLRIKWWKKFNYSHLEVNKIKDWFKANIHLQDM 163

Query: 121 KRKEHEEHALLRNHIMSALAGTHSTEEFNSLIQRVANRLSDDSASERVTISSSSSSVDDD 180
            R+E E   L +N +MS LAG  + +EFNS++  V   LSDD  ++ +   +S +SV+D 
Sbjct: 164 TRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDD--NDDLPEDASPASVNDV 223

Query: 181 SDQDTE----IDVNDSFLDSQPY 193
            D D      +D+ND FLD QPY
Sbjct: 224 DDLDYNPYEGLDINDPFLDKQPY 242

[Close]

BLAST of Moc10g14020 vs. ExPASy TrEMBL
Match: A0A5D3BCD5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00150 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 76/218 (34.86%), Postives = 112/218 (51.38%), Query Frame = 0


Query: 7   GSTTQKGKGKRPESSTPSVRTLRGNNPFYSKVLKSKAFQPYPEIKGYHAKTEIVVVIIEL 66
           G TT   +   P +S+ S    R N   YS++++ K FQP P I GY  KT +V + IE 
Sbjct: 49  GPTTPNKRAASPTASSSSSAIPR-NPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEP 108

Query: 67  EYDRQS------------------------------GNFKALTKAISVKWWDKYQYSHLQ 126
           E+D  S                              G  ++  K++ +KWW+K+ YS+L+
Sbjct: 109 EFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKSFGKLQSPEKSLRIKWWEKFNYSYLE 168

Query: 127 EDNLKAWFETNVHLQDIKRKEHEEHALLRNHIMSALAGTHSTEEFNSLIQRVANRLSDDS 186
              +K WF+ N+HLQD+ R+E E   + +N IMS L G  + +EFNS++  V   LSDD+
Sbjct: 169 VKKIKDWFKANIHLQDMTRQEDEALLVTKNPIMSTLVGASTQQEFNSVVNNVVVNLSDDN 228

Query: 187 ASERVTISSSSSSVDDDSDQD--TEIDVNDSFLDSQPY 193
                  S +S +  DD D D    +D+ND FLD+QPY
Sbjct: 229 NDLPEDASPASGNDVDDLDYDPYEGLDINDPFLDTQPY 265

[Close]

BLAST of Moc10g14020 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.1e-22
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 72  SGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDIKRKEHEEHALLRNHIMSA 131
           SGNFKAL+K++ +KWW+K+ YSHL+ + +K WF+ N+HLQD+ R+E E   L +N +MS 
Sbjct: 297 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 356

Query: 132 LAGTHSTEEFNSLIQRVANRLSDDSASERVTISSSSSSVDDDSDQD--TEIDVNDSFLDS 191
           LAG  + +EFNS++  V   LSDD+      +S +S +  DD D D    +D+ND FLD+
Sbjct: 357 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNADDFDYDPYEGLDINDPFLDT 416

Query: 192 QPY 193
           QPY
Sbjct: 417 QPY 419

[Close]

BLAST of Moc10g14020 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 72  SGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDIKRKEHEEHALLRNHIMSA 131
           SGNFKAL+K++ +KWW+K+ YSHL+ + +K WF+ N+HLQD+ R+E E   L +N +MS 
Sbjct: 297 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 356

Query: 132 LAGTHSTEEFNSLIQRVANRLSDDSASERVTISSSSSSVDDDSDQD--TEIDVNDSFLDS 191
           LAG  + +EFNS++  V   LSDD+      +S +S +  DD D D    +D+ND FLD+
Sbjct: 357 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDFDYDPYEGLDINDPFLDT 416

Query: 192 QPY 193
           QPY
Sbjct: 417 QPY 419

[Close]

BLAST of Moc10g14020 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 58/123 (47.15%), Postives = 84/123 (68.29%), Query Frame = 0


Query: 72  SGNFKALTKAISVKWWDKYQYSHLQEDNLKAWFETNVHLQDIKRKEHEEHALLRNHIMSA 131
           SGNFKAL+K++ +KWW+K+ YSHL+ + +K WF+ N+HLQD+ R+E E   L +N +MS 
Sbjct: 297 SGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMST 356

Query: 132 LAGTHSTEEFNSLIQRVANRLSDDSASERVTISSSSSSVDDDSDQD--TEIDVNDSFLDS 191
           LAG  + +EFNS++  V   LSDD+      +S +S +  DD D D    +D+ND FLD+
Sbjct: 357 LAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEGLDINDPFLDT 416

Query: 192 QPY 193
           QPY
Sbjct: 417 QPY 419

The following BLAST results are available for this feature:

BLAST of Moc10g14020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066358.1	2.7e-28	40.89	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0058437.1	2.2e-22	34.86	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ96699.1 Retrotransp...	[more]
KAA0063832.1	1.9e-21	47.15	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0056777.1	2.4e-21	47.15	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
TYK00926.1	2.4e-21	39.22	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Moc10g14020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g14020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VF67	1.3e-28	40.89	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BCD5	1.1e-22	34.86	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7V6D1	9.1e-22	47.15	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVN1	1.2e-21	47.15	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VIK9	1.2e-21	47.15	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Moc10g14020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g14020.1	Moc10g14020.1	mRNA