Moc10g12500 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g12500
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr10: 9462658 .. 9464452 (-)
RNA-Seq Expression	Moc10g12500
Synteny	Moc10g12500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACGGCCCGCTCTGTAAAGGTTACAGACGACTCGATCCAGGTCGTTCGTGTGGAGACATGCGAGTGGGGGTATCCTATACAATGAGTTTGTATAAGACCGGGCCGCAAAATAAGCAATCTTTAGATGTAACACCGTTAACTAATAGATTGTCCTTTCTTAGGATGACCAGGCAACTCATTCTCAATCCTGAATGAGTTATGGACTCCTGCCCGTGAGGGCTTGTTCTTTGATCTGTATGGGTGAGAGTGGCCTGAGTCGCCGACTCAACATTCCTACCATTTTGGGACGAGACCGAGTGAGGAGCTGGGAACATAACTTCACAAGATTGTTATCACTCCTCCCCAACTTTAGGGAAGTAGGTGAGTGTTCCCTTAAATGCTGACTCCGGGACTTGAACAAGGGGCCCCACCCTCTCATTGGCCGAGAGGGACTTCCGGTTATTGGTTGGACCATAACCGAGTTGTTCATTAGAGAAGCAGTGGTGTTTAAGGAGTAAGATGTAACTCAGGGGTAAAACGGTAATTTGACCCAACTTGAGTTACGAACACTCGTGAAGGATTGACTCGTCATTAATGGTCATATGTCCATGGACATGAAAACATTCTGCAGTGAGAAGAGTGCAACTGCGGGTCTTTAGTGGAATGACCCATAGTTAACGAATCTAGATTAACTCGGTCAATGAGTTTGACCGATTAATCTTGCATCGTTGGAGCTTCTGATCTGTAGGTCTATTAGGTCCCCTTGCTAGCTCATAACGGATAAAACGAGGATCAAATTTTTGGAAGAATTTGAATTGTTCAAATTACTTAAGGGATTATATGTATATTGATACATTATAATATATATAGTTAATTGTAAATTAAAACTATATATTATGAGAGATATTATTTGAATGATATTCAAATAAAATTAATATGAATAAGATTCATATTAAAACTATAGGTTAAAAATAATGTGCTTAAGATGTACATTAAAACTATAGGTTATACGAGAGAAATGTTTTAGAATATGATTCTAATTTTATAATAAATAATTAAGTGTTAATTATTTATGTGTATATATATTTATTAATTATTAATTGGATTAATAATATTAATTAATTTGATTAATTAATTATATATATATATTTTATTATTTTTATATTATATATATATATATATTAATATTAATATTAATATTAATATTAATATTATTAGTAATATTAACTCCCCTCCAAAATTGCAGGGGAGTGGGAGGTTTTGTGACGTGGGGAATTCCTTCTTCTTCTTCTCCAAGTGTTGGAGAATTAGACAGAAGGTGTTACAGAACAGAAGAAAAGAAAAAGACTCCCAACGATTTCTCTCAAAATTCTCTCAATTTCTCCCTCTCTTCGATCAAGGTGCTACCACAAGAACGATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCAGTAGTGGTGTTCGAGGGGAATTCACTGAAGAAACGTTCTTCAAAGGTTTGGAATTTCCCCTGTATTTCCTTCTTTCTATTTCGGTTTTGTGTCCCAAAAATCAGCAACGAAAATCCGCTTCCGCTACGGGATTCACATCCCTTCAGGAAGTTGTTCCAAATATGGATAAGCTCATCACTCTTTATTGTGATAATAGTGGCACAGTGGCAAACTCCAAGGAACCTATAAGTCACAAAAGAGGGAAGCATATAGAGAGAAAATATCATCATATAAGAGATATTGTGCAAAGAGGTGACGTGATTGTCACCAAGATAGCATCTACAGATAACTGTGCTGATCCATTTACAAAGGCTTTCTAG

mRNA sequence

ATGGATACGGCCCGCTCTGTAAAGGTTACAGACGACTCGATCCAGGTCGTTCGTGTGGAGACATGCGAGTGGGGGGGAGTGGGAGGTTTTGTGACGTGGGGAATTCCTTCTTCTTCTTCTCCAAGTGTTGGAGAATTAGACAGAAGGTGCTACCACAAGAACGATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCAGTAGTGGTGTTCGAGGGGAATTCACTGAAGAAACGTTCTTCAAAGCAACGAAAATCCGCTTCCGCTACGGGATTCACATCCCTTCAGGAAGTTGTTCCAAATATGGATAAGCTCATCACTCTTTATTGTGATAATAGTGGCACAGTGGCAAACTCCAAGGAACCTATAAGTCACAAAAGAGGGAAGCATATAGAGAGAAAATATCATCATATAAGAGATATTGTGCAAAGAGGTGACGTGATTGTCACCAAGATAGCATCTACAGATAACTGTGCTGATCCATTTACAAAGGCTTTCTAG

Coding sequence (CDS)

ATGGATACGGCCCGCTCTGTAAAGGTTACAGACGACTCGATCCAGGTCGTTCGTGTGGAGACATGCGAGTGGGGGGGAGTGGGAGGTTTTGTGACGTGGGGAATTCCTTCTTCTTCTTCTCCAAGTGTTGGAGAATTAGACAGAAGGTGCTACCACAAGAACGATCCCGAGACCCAAGAGGATAGCGAGGAAGATCCAGTAGTGGTGTTCGAGGGGAATTCACTGAAGAAACGTTCTTCAAAGCAACGAAAATCCGCTTCCGCTACGGGATTCACATCCCTTCAGGAAGTTGTTCCAAATATGGATAAGCTCATCACTCTTTATTGTGATAATAGTGGCACAGTGGCAAACTCCAAGGAACCTATAAGTCACAAAAGAGGGAAGCATATAGAGAGAAAATATCATCATATAAGAGATATTGTGCAAAGAGGTGACGTGATTGTCACCAAGATAGCATCTACAGATAACTGTGCTGATCCATTTACAAAGGCTTTCTAG

Protein sequence

MDTARSVKVTDDSIQVVRVETCEWGGVGGFVTWGIPSSSSPSVGELDRRCYHKNDPETQEDSEEDPVVVFEGNSLKKRSSKQRKSASATGFTSLQEVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTDNCADPFTKAF

Homology

[Close]

BLAST of Moc10g12500 vs. NCBI nr
Match: KAA0035454.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-23
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM K ITLYCDNSG VANSKEP SHKRGKHIERKYH IR+IV RGDVIVT+IAST 
Sbjct: 113 EVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTH 172

Query: 156 NCADPFTK 164
           N ADPFTK
Sbjct: 173 NVADPFTK 180

[Close]

BLAST of Moc10g12500 vs. NCBI nr
Match: KAA0043516.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 5.0e-23
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM+ LITLYCDNSGTVANSKEP SHKRGKHIERKYH IR+I+QRGDVIVTKIA  +
Sbjct: 26  EVVPNMNLLITLYCDNSGTVANSKEPCSHKRGKHIERKYHLIREILQRGDVIVTKIALEN 85

Query: 156 NCADPFTK 164
           N  DPFTK
Sbjct: 86  NIIDPFTK 93

[Close]

BLAST of Moc10g12500 vs. NCBI nr
Match: KAA0033235.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK20411.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 6.5e-23
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM+  ITLYCDNSGTVANSKEP SHKRGKHIERKYH IR+IVQRGDVIVTKIAS  
Sbjct: 509 EVVPNMNLPITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASKH 568

Query: 156 NCADPFTK 164
           N  DPFTK
Sbjct: 569 NIVDPFTK 576

[Close]

BLAST of Moc10g12500 vs. NCBI nr
Match: KAA0046416.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 8.5e-23
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM K ITLYCDNSG VANS+EP SHKRGKHIERKYH IR+IV RGDVIVT+IAST 
Sbjct: 419 EVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTH 478

Query: 156 NCADPFTK 164
           N ADPFTK
Sbjct: 479 NVADPFTK 486

[Close]

BLAST of Moc10g12500 vs. NCBI nr
Match: KAA0061170.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 8.5e-23
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM+  ITLYCDNSG VANSKEP SHKRGKHIERKYH IR+IVQRGDVIVTKIAS  
Sbjct: 307 EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEH 366

Query: 156 NCADPFTK 164
           N ADPFTK
Sbjct: 367 NIADPFTK 374

[Close]

BLAST of Moc10g12500 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-05
Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 101  MDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTDNCADP 160
            ++  I +Y DN G ++ +  P  HKR KHI+ KYH  R+ VQ   + +  I + +  AD 
Sbjct: 1322 LENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADI 1381

Query: 161  FTK 164
            FTK
Sbjct: 1382 FTK 1384

[Close]

BLAST of Moc10g12500 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 103  KLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTDNCADPFT 162
            K   +YCD+   +  SK  + H R KHI+ +YH IR++V    + V KI++ +N AD  T
Sbjct: 1249 KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLT 1308

Query: 163  K 164
            K
Sbjct: 1309 K 1309

[Close]

BLAST of Moc10g12500 vs. ExPASy TrEMBL
Match: A0A5A7SVY7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00810 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM K ITLYCDNSG VANSKEP SHKRGKHIERKYH IR+IV RGDVIVT+IAST 
Sbjct: 113 EVVPNMSKPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTH 172

Query: 156 NCADPFTK 164
           N ADPFTK
Sbjct: 173 NVADPFTK 180

[Close]

BLAST of Moc10g12500 vs. ExPASy TrEMBL
Match: A0A5A7TNA1 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00100 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.4e-23
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM+ LITLYCDNSGTVANSKEP SHKRGKHIERKYH IR+I+QRGDVIVTKIA  +
Sbjct: 26  EVVPNMNLLITLYCDNSGTVANSKEPCSHKRGKHIERKYHLIREILQRGDVIVTKIALEN 85

Query: 156 NCADPFTK 164
           N  DPFTK
Sbjct: 86  NIIDPFTK 93

[Close]

BLAST of Moc10g12500 vs. ExPASy TrEMBL
Match: A0A5D3DA15 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G00030 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.2e-23
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM+  ITLYCDNSGTVANSKEP SHKRGKHIERKYH IR+IVQRGDVIVTKIAS  
Sbjct: 509 EVVPNMNLPITLYCDNSGTVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASKH 568

Query: 156 NCADPFTK 164
           N  DPFTK
Sbjct: 569 NIVDPFTK 576

[Close]

BLAST of Moc10g12500 vs. ExPASy TrEMBL
Match: A0A5A7V1F5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00440 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM+  ITLYCDNSG VANSKEP SHKRGKHIERKYH IR+IVQRGDVIVTKIAS  
Sbjct: 307 EVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEH 366

Query: 156 NCADPFTK 164
           N ADPFTK
Sbjct: 367 NIADPFTK 374

[Close]

BLAST of Moc10g12500 vs. ExPASy TrEMBL
Match: A0A5A7TWI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001610 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 96  EVVPNMDKLITLYCDNSGTVANSKEPISHKRGKHIERKYHHIRDIVQRGDVIVTKIASTD 155
           EVVPNM K ITLYCDNSG VANS+EP SHKRGKHIERKYH IR+IV RGDVIVT+IAST 
Sbjct: 419 EVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREIVHRGDVIVTQIASTH 478

Query: 156 NCADPFTK 164
           N ADPFTK
Sbjct: 479 NVADPFTK 486

The following BLAST results are available for this feature:

BLAST of Moc10g12500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035454.1	3.8e-23	85.29	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0043516.1	5.0e-23	83.82	retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m...	[more]
KAA0033235.1	6.5e-23	85.29	gag/pol protein [Cucumis melo var. makuwa] >TYK20411.1 gag/pol protein [Cucumis ...	[more]
KAA0046416.1	8.5e-23	83.82	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061170.1	8.5e-23	85.29	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc10g12500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.3e-05	38.10	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	2.2e-05	39.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc10g12500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVY7	1.9e-23	85.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G0081...	[more]
A0A5A7TNA1	2.4e-23	83.82	Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var....	[more]
A0A5D3DA15	3.2e-23	85.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold590G0003...	[more]
A0A5A7V1F5	4.1e-23	85.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G0044...	[more]
A0A5A7TWI0	4.1e-23	83.82	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]

BLAST of Moc10g12500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..67
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 90..164
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 90..164
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 102..164 e-value: 1.27676E-25 score: 93.3017

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g12500.1	Moc10g12500.1	mRNA