Moc10g12170 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g12170
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 9265820 .. 9267571 (+)
RNA-Seq Expression	Moc10g12170
Synteny	Moc10g12170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCCAGAAAGTCGAAGTACAAGATATGGACTTTCTGGATTCTATCTCGGGCCTCGTCCCGGTCCATTTCGAAGCGGGATGAGTCCCAAGATGGATTCCAGAAAGTCCAACCATCCTTCTGGAATCCATCTTGGGACTCATCCCGGTTCGAAATGGACCGGGACGAGGCCCGAGATAGAATCCAGAAAGAAGGATGGACCTTCTGGAATCCATCTTGGGACTCATCCCGCTTCGAAATGGACCGGGACGAGGCCCGAGATGCTCTCTGGATTCCATCTCGGGCCTCGTCTCGTGATAACTCTGTATTTTTTGAATTTCACCCTTACCATTGCTTTGTGAAGGACCTTCAAACTGGCCACATTTTACTCCAAGGGAAGGTACATGATGATCTATATCGATTTGAGTTGGAGAAAGCTGCTCCCACGTCCTCTGACATAACTGCATCTGGTGTGTCTGTCATCTCCTCTTCTAGTGTCAACACTCTTACACACAAAACCTCTTTACCTCATGATTCTATCTCTTTACCAATTAATTGTAATCTGTCTTTGTTTGATGTTTGGCATAGGCGATTAGGTCATGTTGCTTCGTTCATCTAATGTACCCATTCAAAATAAATCAAAATTAAGTATATGTCTTGCTTCTGCTACTAGCAAATGTCATAGTCTTCCTTTTGTTGATTCAAATACTGTCTATTATTCTCCACTTTCATTAGTAGTTGTTGATCTCTGAGGTCCTGCCTTTGTTTCATCCAGAAATGGGTTTAAGTACTACATAAGTTTTGTTGATGTTCATTCCCGATATACATGGGTTTTTTCCTTACAACAAAATCCGAAGCTTTTAAAGCCTTTACACTTTTCAAACCACAAGCTGAAAAATCTTTAAATTGTTCTATTCGTCGCCTTCAAACTGATGGCGGGGGTGAGTTTTCTTCGTTTATTCCTTTTCTGAAATCCCATGGTATAGAACATAGAGTTTCTTGTCCATATACATCACAACAAAATGGCATCGTTGAGAGGAAACATAGGCATATTGTAGATATGGGTCTCACCATTCTTTCTCAAGCATCTATGCCTCTTACTTTTTGGGATGACGCCTTCTCCACGGCTATGTATTTGATCAATCGCCTTCCTACCTCTGATCTTAATGGTAACTCCCCAATTGAAACTCTCTTTGGTTTCCAACCTCACTACTTGTTTCTAAAAACGTTTGGATGCCTCTGTTTCCCATCCTTACGCTCATATAATCAACATAAAATTCAACCTCGCTCCTCTGCTTGTCTTTTCCTTGGCTATAGTAATATTCACCATGGTTATAAATGTTTGTCGCCTTCTGGTCGTTTATACATATCGCGTCATGTTTTATTTGACGAAACTGTTGTCCCGTATCTGCAGTTATTTCAAAAACCAACCTCTCATTCTTCTAGCCCTACAATTCAAACTACACTCCCTATTATATCACCAGCTCCTTCATCACCATCACCTCAGTGTGACACATCAGTTGTTCCTGACCCATCTGACTCTTGCGAATCTTCCCCTAATATTCATGTTGCATTGCCAGTCAATAATTCTGAAAATGTACTTGCTGCAATACCTACTAATGGCTTTGATGAAAATTCTAGTACCACTTTACCTACTGGTGTTGCTTCAACTTCTCAAACAGTTTCAAATTCAAATGTTCAGTCCACTGAACAAATGCCTCCACAGAATCATCATCACATGACCACCCGAGCAAAAAAATGGGATTTTTAA

mRNA sequence

ATGGAATCCAGAAAGTCGAAGTACAAGATATGGACTTTCTGGATTCTATCTCGGGCCTCGTCCCGGTCCATTTCGAAGCGGGATGAGTCCCAAGATGGATTCCAGAAAGTCCAACCATCCTTCTGGAATCCATCTTGGGACTCATCCCGGTTCGAAATGGACCGGGACGAGGCCCGAGATAGAATCCAGAAAGAAGGATGGACCTTCTGGAATCCATCTTGGGACTCATCCCGCTTCGAAATGGACCGGGACGAGGCCCGAGATGCTCTCTGGATTCCATCTCGGGCCTCGTCTCGTGATAACTCTGTATTTTTTGAATTTCACCCTTACCATTGCTTTGTGAAGGACCTTCAAACTGGCCACATTTTACTCCAAGGGAAGGTACATGATGATCTATATCGATTTGAGTTGGAGAAAGCTGCTCCCACGTCCTCTGACATAACTGCATCTGGTGTGTCTGTCATCTCCTCTTCTAGTGTCAACACTCTTACACACAAAACCTCTTTACCTCATGATTCTATCTCTTTACCAATTAATTGTAATCTGTCTTTGTTTGATGTTTGGCATAGGCGATTAGCTCCTTCATCACCATCACCTCAGTGTGACACATCAGTTGTTCCTGACCCATCTGACTCTTGCGAATCTTCCCCTAATATTCATGTTGCATTGCCAGTCAATAATTCTGAAAATGTACTTGCTGCAATACCTACTAATGGCTTTGATGAAAATTCTAGTACCACTTTACCTACTGGTGTTGCTTCAACTTCTCAAACAGTTTCAAATTCAAATGTTCAGTCCACTGAACAAATGCCTCCACAGAATCATCATCACATGACCACCCGAGCAAAAAAATGGGATTTTTAA

Coding sequence (CDS)

ATGGAATCCAGAAAGTCGAAGTACAAGATATGGACTTTCTGGATTCTATCTCGGGCCTCGTCCCGGTCCATTTCGAAGCGGGATGAGTCCCAAGATGGATTCCAGAAAGTCCAACCATCCTTCTGGAATCCATCTTGGGACTCATCCCGGTTCGAAATGGACCGGGACGAGGCCCGAGATAGAATCCAGAAAGAAGGATGGACCTTCTGGAATCCATCTTGGGACTCATCCCGCTTCGAAATGGACCGGGACGAGGCCCGAGATGCTCTCTGGATTCCATCTCGGGCCTCGTCTCGTGATAACTCTGTATTTTTTGAATTTCACCCTTACCATTGCTTTGTGAAGGACCTTCAAACTGGCCACATTTTACTCCAAGGGAAGGTACATGATGATCTATATCGATTTGAGTTGGAGAAAGCTGCTCCCACGTCCTCTGACATAACTGCATCTGGTGTGTCTGTCATCTCCTCTTCTAGTGTCAACACTCTTACACACAAAACCTCTTTACCTCATGATTCTATCTCTTTACCAATTAATTGTAATCTGTCTTTGTTTGATGTTTGGCATAGGCGATTAGCTCCTTCATCACCATCACCTCAGTGTGACACATCAGTTGTTCCTGACCCATCTGACTCTTGCGAATCTTCCCCTAATATTCATGTTGCATTGCCAGTCAATAATTCTGAAAATGTACTTGCTGCAATACCTACTAATGGCTTTGATGAAAATTCTAGTACCACTTTACCTACTGGTGTTGCTTCAACTTCTCAAACAGTTTCAAATTCAAATGTTCAGTCCACTGAACAAATGCCTCCACAGAATCATCATCACATGACCACCCGAGCAAAAAAATGGGATTTTTAA

Protein sequence

MESRKSKYKIWTFWILSRASSRSISKRDESQDGFQKVQPSFWNPSWDSSRFEMDRDEARDRIQKEGWTFWNPSWDSSRFEMDRDEARDALWIPSRASSRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISSSSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRLAPSSPSPQCDTSVVPDPSDSCESSPNIHVALPVNNSENVLAAIPTNGFDENSSTTLPTGVASTSQTVSNSNVQSTEQMPPQNHHHMTTRAKKWDF

Homology

[Close]

BLAST of Moc10g12170 vs. NCBI nr
Match: XP_017635685.1 (PREDICTED: uncharacterized protein LOC108477685 [Gossypium arboreum])

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-12
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           + DN VFFEFHP+HCFVKD++TG+ILL G +H+ LY+F+L       SD  +   +  SS
Sbjct: 303 ANDNQVFFEFHPFHCFVKDIKTGNILLVGHIHNGLYQFDL-------SDTQSCNAASFSS 362

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRL 193
           ++V    H TSL       P   N+S+FD+WH+RL
Sbjct: 363 ATV----HTTSL------APPGSNVSVFDLWHKRL 380

[Close]

BLAST of Moc10g12170 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 84.7 bits (208), Expect = 1.4e-12
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           ++DN VFFEFHP + FVKDL TG +L QG VHD+LY+FEL KA+ +    + S  S  S 
Sbjct: 326 AKDNHVFFEFHPSNYFVKDLTTGQLLFQGTVHDELYQFELRKAS-SQKPFSVSSTSNNSP 385

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRLAPSSPSPQCDTSVVPDPSDSCESSP 217
           +  N++   ++ P   +  PI CN S+ D+WHRR   S   P     +V     SC  + 
Sbjct: 386 TIFNSILQYSNSP--MLHAPITCNTSVLDIWHRRFGHSFFLP-----IVQTVMRSCNKTS 445

Query: 218 NIHVALPVNNSENV 232
            +     +  + N+
Sbjct: 446 TLCHVYAIGKAHNL 451

[Close]

BLAST of Moc10g12170 vs. NCBI nr
Match: KAG8496312.1 (hypothetical protein CXB51_009046 [Gossypium anomalum])

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-11
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           +RDN V+F+FHP HCFV D++TG ILL G +H+ LY+F+L  ++  S+ +T+      ++
Sbjct: 419 ARDNQVYFKFHPVHCFVNDVKTGSILLVGHIHNGLYKFDLSASSRVSTTLTSPATVYATT 478

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRL 193
            S +  +H T+L   + S       ++FD+WHRRL
Sbjct: 479 LSSSVTSHATNLRTPTPS------TAVFDLWHRRL 507

[Close]

BLAST of Moc10g12170 vs. NCBI nr
Match: KAG8492721.1 (hypothetical protein CXB51_010467 [Gossypium anomalum])

HSP 1 Score: 79.3 bits (194), Expect = 5.8e-11
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           ++DN V+FEFHP HCFVKD++TG ILL G +H+ LY+F+L  ++  S+ +T+      ++
Sbjct: 400 AKDNQVYFEFHPVHCFVKDVKTGSILLVGHIHNGLYKFDLSASSRVSTTLTSPVTIHATT 459

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRL 193
            S +  +H T+L   + S       + FD+WHRRL
Sbjct: 460 LSSSVTSHATNLRAPTPS------TADFDLWHRRL 488

[Close]

BLAST of Moc10g12170 vs. NCBI nr
Match: KAG8492864.1 (hypothetical protein CXB51_010176 [Gossypium anomalum])

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-09
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           ++DN VF EFHP+H FVKD++TG+ILL G +H+ LY+F+L      ++ + +S    I+ 
Sbjct: 211 TKDNQVFIEFHPFHYFVKDIKTGNILLVGPIHNGLYQFDLLDTQSCNATLASSATVYIT- 270

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRR 192
                          S+ LP   N+SLFD+WH+R
Sbjct: 271 ---------------SLELP-GSNVSLFDLWHKR 287

[Close]

BLAST of Moc10g12170 vs. ExPASy TrEMBL
Match: A0A6P4PYS4 (uncharacterized protein LOC108477685 OS=Gossypium arboreum OX=29729 GN=LOC108477685 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-13
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           + DN VFFEFHP+HCFVKD++TG+ILL G +H+ LY+F+L       SD  +   +  SS
Sbjct: 303 ANDNQVFFEFHPFHCFVKDIKTGNILLVGHIHNGLYQFDL-------SDTQSCNAASFSS 362

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRL 193
           ++V    H TSL       P   N+S+FD+WH+RL
Sbjct: 363 ATV----HTTSL------APPGSNVSVFDLWHKRL 380

[Close]

BLAST of Moc10g12170 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-13
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           ++DN VFFEFHP + FVKDL TG +L QG VHD+LY+FEL KA+ +    + S  S  S 
Sbjct: 326 AKDNHVFFEFHPSNYFVKDLTTGQLLFQGTVHDELYQFELRKAS-SQKPFSVSSTSNNSP 385

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRLAPSSPSPQCDTSVVPDPSDSCESSP 217
           +  N++   ++ P   +  PI CN S+ D+WHRR   S   P     +V     SC  + 
Sbjct: 386 TIFNSILQYSNSP--MLHAPITCNTSVLDIWHRRFGHSFFLP-----IVQTVMRSCNKTS 445

Query: 218 NIHVALPVNNSENV 232
            +     +  + N+
Sbjct: 446 TLCHVYAIGKAHNL 451

[Close]

BLAST of Moc10g12170 vs. ExPASy TrEMBL
Match: A0A1U8P8H3 (uncharacterized protein LOC107956322 OS=Gossypium hirsutum OX=3635 GN=LOC107956322 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-10
Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           ++DN VFFEFHP HCFVKD++T  ILL G +H+ LY+F+L  A+P  S       +V+SS
Sbjct: 351 AKDNQVFFEFHPVHCFVKDIKTRSILLVGHIHNGLYKFDL-SASPRVS-------TVLSS 410

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRL 193
            + +  TH        +  P + + ++FD+WHRRL
Sbjct: 411 PATSHATH--------LRTPTS-STAIFDLWHRRL 428

[Close]

BLAST of Moc10g12170 vs. ExPASy TrEMBL
Match: A0A5B6WP23 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium australe OX=47621 GN=EPI10_005788 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           + DN V+FE HP+H FVKD++TG ILL G++HD LY F L             G    ++
Sbjct: 7   ANDNQVYFECHPFHYFVKDIKTGTILLVGRIHDGLYHFNL------------PGTQSFNT 66

Query: 158 SSVNTLTHKTSLPHDSISLPINCNLSLFDVWHRRL 193
           +S ++ T  T+    SIS     + S+FD+WH+RL
Sbjct: 67  ASNSSATAHTTHLESSIS-----SSSIFDLWHKRL 84

[Close]

BLAST of Moc10g12170 vs. ExPASy TrEMBL
Match: A0A438FJP6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1134 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-08
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 98  SRDNSVFFEFHPYHCFVKDLQTGHILLQGKVHDDLYRFELEKAAPTSSDITASGVSVISS 157
           +RDN+V+FEFHP  CFVKD     +LLQG +H  LY+F L K         ASG+S+ + 
Sbjct: 573 ARDNNVYFEFHPKVCFVKDKSNHSLLLQGNLHKGLYQFNLSKKLFGK----ASGLSLSND 632

Query: 158 SSVNTLTHKTSLPHDSISLP--INCNLSLFDVWHRRLAPSSPSPQCDTSVVPDPS--DSC 217
            +  T  + + + +D+   P   N +  +FD+WH+RL    P+ +  T V+ D     S 
Sbjct: 633 KNELTCCNASLVHNDNSDFPEKTNSSFHVFDLWHKRL--GHPASKIVTQVLNDNKIPFST 692

Query: 218 ESSPNIHVALPVNNSENV 232
           +S  +I  A  +  S N+
Sbjct: 693 KSGSSICSACQLGKSHNL 704

The following BLAST results are available for this feature:

BLAST of Moc10g12170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_017635685.1	1.1e-12	46.32	PREDICTED: uncharacterized protein LOC108477685 [Gossypium arboreum]	[more]
XP_022156747.1	1.4e-12	37.31	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
KAG8496312.1	2.0e-11	40.00	hypothetical protein CXB51_009046 [Gossypium anomalum]	[more]
KAG8492721.1	5.8e-11	41.05	hypothetical protein CXB51_010467 [Gossypium anomalum]	[more]
KAG8492864.1	2.5e-09	39.36	hypothetical protein CXB51_010176 [Gossypium anomalum]	[more]

BLAST of Moc10g12170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g12170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P4PYS4	5.2e-13	46.32	uncharacterized protein LOC108477685 OS=Gossypium arboreum OX=29729 GN=LOC108477...	[more]
A0A6J1DSS1	6.7e-13	37.31	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A1U8P8H3	5.3e-10	43.16	uncharacterized protein LOC107956322 OS=Gossypium hirsutum OX=3635 GN=LOC1079563...	[more]
A0A5B6WP23	1.3e-08	40.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Gossypium austral...	[more]
A0A438FJP6	2.9e-08	34.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc10g12170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g12170.1	Moc10g12170.1	mRNA