Moc10g10720 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g10720
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 8184405 .. 8184940 (+)
RNA-Seq Expression	Moc10g10720
Synteny	Moc10g10720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGATGAAAACCAAATAGTGATATTGCTAAATTCATTAGCTGAGAGCTACAAGGAAATTAAGTCAGCGATTAAATATGGTAGGGATTCATTAACTTTAGACTTATTTCTTGAGGCACTAAGATCTAAAGACTTGAAAATTAAATCAGAAAAGAAAGATGCAGAAGTTCTTTTGGCTCGTGGAAGAACAAAACATAAAAATACGAGTCAAGGTAAACACAGTGGAAAATCTAGATTGAAATCAAGAGGAAAGGTTAAGAAATGCTATTTTTGTCACAAAGAATGACACATTGTTATGCGTTTAATGCTACTATGAAGCAAGGTAACGCAGAGAAGAAAGAAGAAGGTAGTTCAGCTAACATACATGATGGTTATGATTTCGTTGAGGTTCTAGCAGTTTCAGATCATCATTGTGGAAAGGAGTGGATCTTGGATTCCAGATGTTCCTTTCACATGAGTCCTCATAAAGATTATTTCCAAGACTTCGGTGAATATGAAGGGGGAAGCATTCTGATGGGAAATGATCAGAAGTGA

mRNA sequence

ATGTCAGATGAAAACCAAATAGTGATATTGCTAAATTCATTAGCTGAGAGCTACAAGGAAATTAAGTCAGCGATTAAATATGGTAGGGATTCATTAACTTTAGACTTATTTCTTGAGGCACTAAGATCTAAAGACTTGAAAATTAAATCAGAAAAGAAAGATGCAGAAGTTCTTTTGGCTCGTGGAAGAACAAAACATAAAAATACGAGTCAAGGTAACGCAGAGAAGAAAGAAGAAGGTAGTTCAGCTAACATACATGATGGTTATGATTTCGTTGAGGTTCTAGCAGTTTCAGATCATCATTGTGGAAAGGAGTGGATCTTGGATTCCAGATGTTCCTTTCACATGAGTCCTCATAAAGATTATTTCCAAGACTTCGGTGAATATGAAGGGGGAAGCATTCTGATGGGAAATGATCAGAAGTGA

Coding sequence (CDS)

ATGTCAGATGAAAACCAAATAGTGATATTGCTAAATTCATTAGCTGAGAGCTACAAGGAAATTAAGTCAGCGATTAAATATGGTAGGGATTCATTAACTTTAGACTTATTTCTTGAGGCACTAAGATCTAAAGACTTGAAAATTAAATCAGAAAAGAAAGATGCAGAAGTTCTTTTGGCTCGTGGAAGAACAAAACATAAAAATACGAGTCAAGGTAACGCAGAGAAGAAAGAAGAAGGTAGTTCAGCTAACATACATGATGGTTATGATTTCGTTGAGGTTCTAGCAGTTTCAGATCATCATTGTGGAAAGGAGTGGATCTTGGATTCCAGATGTTCCTTTCACATGAGTCCTCATAAAGATTATTTCCAAGACTTCGGTGAATATGAAGGGGGAAGCATTCTGATGGGAAATGATCAGAAGTGA

Protein sequence

MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLARGRTKHKNTSQGNAEKKEEGSSANIHDGYDFVEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSILMGNDQK

Homology

[Close]

BLAST of Moc10g10720 vs. NCBI nr
Match: KAA0067607.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ97155.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.7e-27
Identity = 74/177 (41.81%), Postives = 109/177 (61.58%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL++++L+IK E+KD E+L+A
Sbjct: 134 MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA 193

Query: 61  RGRTKHK----------NTSQG-------------------NAEKKEEGSSANIHDGYDF 120
           RGR++ K          + S+G                   N  ++   S AN+ DGY+F
Sbjct: 194 RGRSEKKSWKGKERSSRSKSKGKSRKCFLCHKGHFKKNCPLNKSREASTSEANVTDGYNF 253

Query: 121 ---------VEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSILMGND 140
                     EVL VS       WI+DS C+FHM+PH+D+  +F + +GG +L+G++
Sbjct: 254 AEITDGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKGDGGKVLLGDN 310

[Close]

BLAST of Moc10g10720 vs. NCBI nr
Match: KAE8649708.1 (hypothetical protein Csa_011950 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-26
Identity = 76/177 (42.94%), Postives = 107/177 (60.45%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL+++ LKIK E+KD E+L+ 
Sbjct: 28  MSDENQAVILLNSLLETYREVKAAIKYGRDSLTMSVVLDALKTRSLKIKKERKDGELLMT 87

Query: 61  RGRTKHK----------NTSQGNAEK-------------------KE---------EGSS 120
           +G ++ K          + S+G   K                   KE         E SS
Sbjct: 88  KGGSEKKSWKGKEKSSRSKSKGKGRKCFLCHKEGHFKKNCPLNKGKEASSSQYGTGETSS 147

Query: 121 ANIHDGYDFVEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSILMGND 140
           AN+ DGYD VEVL VS       WI+DS C +HM+P++D+  DF + +GG +L+G++
Sbjct: 148 ANVIDGYDSVEVLMVSHKDIQDAWIMDSGCIYHMTPNRDFLIDFHKNDGGKVLLGDN 204

[Close]

BLAST of Moc10g10720 vs. NCBI nr
Match: KAA0043826.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-26
Identity = 75/185 (40.54%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL++++L+IK E+KD E+L+A
Sbjct: 28  MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA 87

Query: 61  RGRTKHK----------NTSQGNAEK----KEEG----------------SSANIHD--- 120
           RGR++ K          + S+G + K     +EG                S AN+ D   
Sbjct: 88  RGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYN 147

Query: 121 -------------GYDFVEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSI 140
                        GY+  EVL VS       WI+DS C+FHM+PH+D+  +F + +GG +
Sbjct: 148 SAEITNGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKV 207

[Close]

BLAST of Moc10g10720 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-26
Identity = 75/185 (40.54%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL++++L+IK E+KD E+L+A
Sbjct: 138 MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA 197

Query: 61  RGRTKHK----------NTSQGNAEK----KEEG----------------SSANIHD--- 120
           RGR++ K          + S+G + K     +EG                S AN+ D   
Sbjct: 198 RGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYN 257

Query: 121 -------------GYDFVEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSI 140
                        GY+  EVL VS       WI+DS C+FHM+PH+D+  +F + +GG +
Sbjct: 258 SAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKV 317

[Close]

BLAST of Moc10g10720 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 9.2e-26
Identity = 75/185 (40.54%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL++++L+IK E+KD E+L+A
Sbjct: 138 MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA 197

Query: 61  RGRTKHK----------NTSQGNAEK----KEEG----------------SSANIHD--- 120
           RGR++ K          + S+G + K     +EG                S AN+ D   
Sbjct: 198 RGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYN 257

Query: 121 -------------GYDFVEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSI 140
                        GY+  EVL VS       WI+DS C+FHM+PH+D+  +F + +GG +
Sbjct: 258 SAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKV 317

[Close]

BLAST of Moc10g10720 vs. ExPASy TrEMBL
Match: A0A5A7VKC2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00310 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 74/177 (41.81%), Postives = 109/177 (61.58%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL++++L+IK E+KD E+L+A
Sbjct: 134 MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA 193

Query: 61  RGRTKHK----------NTSQG-------------------NAEKKEEGSSANIHDGYDF 120
           RGR++ K          + S+G                   N  ++   S AN+ DGY+F
Sbjct: 194 RGRSEKKSWKGKERSSRSKSKGKSRKCFLCHKGHFKKNCPLNKSREASTSEANVTDGYNF 253

Query: 121 ---------VEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSILMGND 140
                     EVL VS       WI+DS C+FHM+PH+D+  +F + +GG +L+G++
Sbjct: 254 AEITDGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKGDGGKVLLGDN 310

[Close]

BLAST of Moc10g10720 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 75/185 (40.54%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL++++L+IK E+KD E+L+A
Sbjct: 138 MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA 197

Query: 61  RGRTKHK----------NTSQGNAEK----KEEG----------------SSANIHD--- 120
           RGR++ K          + S+G + K     +EG                S AN+ D   
Sbjct: 198 RGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYN 257

Query: 121 -------------GYDFVEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSI 140
                        GY+  EVL VS       WI+DS C+FHM+PH+D+  +F + +GG +
Sbjct: 258 SAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKV 317

[Close]

BLAST of Moc10g10720 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 75/185 (40.54%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL++++L+IK E+KD E+L+A
Sbjct: 138 MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA 197

Query: 61  RGRTKHK----------NTSQGNAEK----KEEG----------------SSANIHD--- 120
           RGR++ K          + S+G + K     +EG                S AN+ D   
Sbjct: 198 RGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYN 257

Query: 121 -------------GYDFVEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSI 140
                        GY+  EVL VS       WI+DS C+FHM+PH+D+  +F + +GG +
Sbjct: 258 SAEITDGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKV 317

[Close]

BLAST of Moc10g10720 vs. ExPASy TrEMBL
Match: A0A5A7TP18 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001600 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 75/185 (40.54%), Postives = 110/185 (59.46%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDENQ VILLNSL E+Y+E+K+AIKYGRDSLT+ + L+AL++++L+IK E+KD E+L+A
Sbjct: 28  MSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIKKERKDGELLMA 87

Query: 61  RGRTKHK----------NTSQGNAEK----KEEG----------------SSANIHD--- 120
           RGR++ K          + S+G + K     +EG                S AN+ D   
Sbjct: 88  RGRSEKKSWKGKERSFRSKSKGKSRKCFLCHKEGHFKKNCPLNKSREASTSEANVTDGYN 147

Query: 121 -------------GYDFVEVLAVSDHHCGKEWILDSRCSFHMSPHKDYFQDFGEYEGGSI 140
                        GY+  EVL VS       WI+DS C+FHM+PH+D+  +F + +GG +
Sbjct: 148 SAEITNGYDSAETGYESAEVLMVSHRDIQDAWIMDSGCTFHMTPHRDFLTNFQKVDGGKV 207

[Close]

BLAST of Moc10g10720 vs. ExPASy TrEMBL
Match: A0A5D3DE69 (Reverse trancriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00210 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 66/155 (42.58%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MSDENQIVILLNSLAESYKEIKSAIKYGRDSLTLDLFLEALRSKDLKIKSEKKDAEVLLA 60
           MSDEN  VILLNSL + Y+E+K++IKYGRDSL +++ L+AL+SKDL+IK E+KD E+LLA
Sbjct: 1   MSDENPAVILLNSLLDIYREVKASIKYGRDSLIMNIALDALKSKDLEIKKERKDKELLLA 60

Query: 61  RGRTKHKNTSQGNAEKKEEGS----------------SANIHDGYDFVEVLAVSDHHCGK 120
           +GR   K     N  K+   S                S  + +GYD  EVL VS      
Sbjct: 61  KGRRHFKKNCPLNKSKEASSSKHAAETSETNVIDGYDSVEVTNGYDLAEVLMVSHRDIQD 120

Query: 121 EWILDSRCSFHMSPHKDYFQDFGEYEGGSILMGND 140
            WI++SRC++HM+P++D+  +F + +G  +++G++
Sbjct: 121 AWIMNSRCTYHMTPNQDFLINFHKSDGKKVILGDN 155

The following BLAST results are available for this feature:

BLAST of Moc10g10720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067607.1	3.7e-27	41.81	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]...	[more]
KAE8649708.1	1.4e-26	42.94	hypothetical protein Csa_011950 [Cucumis sativus]	[more]
KAA0043826.1	9.2e-26	40.54	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	9.2e-26	40.54	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	9.2e-26	40.54	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Moc10g10720 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g10720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKC2	1.8e-27	41.81	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3DNU1	4.5e-26	40.54	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UB25	4.5e-26	40.54	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7TP18	4.5e-26	40.54	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3DE69	1.3e-25	42.58	Reverse trancriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494...	[more]

BLAST of Moc10g10720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g10720.1	Moc10g10720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding