Moc10g10290 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g10290
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transcription elongation factor 1 homolog
Location	chr10: 7866232 .. 7867256 (+)
RNA-Seq Expression	Moc10g10290
Synteny	Moc10g10290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTGTATATGGATGTGGACAGACTCGCGCCACAAGAAATGGGAAAAAGAAAATCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGATAAGCTCGACACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGCGTGGAATGTCGCATGTAAGTTTGCATTTGGTTTCTCTCGGTTTCTAGTAACACGTGGGGGAGGGATTTGATTGAAGGATTTTAGTAGTTCGAGGCACAATGCATGGTTTTACTTCAAAATGTCATACAAAAAGCAGTAACAGTGAATATGTATAATGTCATTAACTTGTCTCCTGGATTAGTCTCTCTGTCTAGGTGCCTCATTGTTTTGCATTGTGACGAGGGTGTTTGTATGGTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGTCAAGAGGGCTTTAGCACAACCATTACAGGTATTCCTTCAAATTTATTTACGAGTGACCGTTTTCCATGAGCTGCTGTGTTTATTTTATTTCTTGTTATTTATTATGATGCGATTGGAACAATTTAGAAATTTTTTATGTATGTTTTGTTTTCAACTGAACCCTTTTTTAGGTTTTGGACTTTGAACGGGCGCATGTGAATATTGCCCCATTTTCTCAGTGCTGAAAGTCGATAGGATTTATGGAAGATTTGATTTGCATTATTACTAGATCATTTCTAGATTTTGTCCTGTTGTGGGGAAGTTGGATTGTAAATGAAAATGTGTTCAAGTTTAGGTCTCTTGTATGACTTTTGTGGATTGAATCGTCTTCACATTGGATTGAATGCTTCCAACAAAAATTTCATTAATATCTAATTTCTTTTATTTTGCAGCCTTGACAGAGCCAATAGACATGTAAGTAAAATTAAAAATGCAAATGGTTTTGTCAATGTTGATGCGTTTCAGTACTTCAATTGACATGATATTGTTCTGATCAGATATAGCGAATGGATTGATGAATGTGAGCGGGTAAACAACCTTGAGGAAGATGATGCTGCCTAG

mRNA sequence

ATGGTATTGTATATGGATGTGGACAGACTCGCGCCACAAGAAATGGGAAAAAGAAAATCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGATAAGCTCGACACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGCGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGTCAAGAGGGCTTTAGCACAACCATTACAGCCTTGACAGAGCCAATAGACATATATAGCGAATGGATTGATGAATGTGAGCGGGTAAACAACCTTGAGGAAGATGATGCTGCCTAG

Coding sequence (CDS)

ATGGTATTGTATATGGATGTGGACAGACTCGCGCCACAAGAAATGGGAAAAAGAAAATCAAGAGCAAAGCCCCCACCTAAGAAGAGGATGGATAAGCTCGACACTGTTTTTAGCTGCCCCTTCTGCAATCATGGGACCAGCGTGGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGTCAAGAGGGCTTTAGCACAACCATTACAGCCTTGACAGAGCCAATAGACATATATAGCGAATGGATTGATGAATGTGAGCGGGTAAACAACCTTGAGGAAGATGATGCTGCCTAG

Protein sequence

MVLYMDVDRLAPQEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTITALTEPIDIYSEWIDECERVNNLEEDDAA

Homology

[Close]

BLAST of Moc10g10290 vs. NCBI nr
Match: XP_022142747.1 (transcription elongation factor 1 homolog [Momordica charantia])

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDAA 104
           TALTEPIDIYSEWIDECERVNNLEEDDAA
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDDAA 89

[Close]

BLAST of Moc10g10290 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDA 103
           TALTEPIDIYSEWIDECERVNNLE+D A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Moc10g10290 vs. NCBI nr
Match: XP_020100434.1 (transcription elongation factor 1 homolog [Ananas comosus] >XP_020100436.1 transcription elongation factor 1 homolog [Ananas comosus] >XP_020100437.1 transcription elongation factor 1 homolog [Ananas comosus] >OAY67665.1 Transcription elongation factor [Ananas comosus] >OAY67675.1 Transcription elongation factor [Ananas comosus])

HSP 1 Score: 182.2 bits (461), Expect = 2.3e-42
Identity = 83/89 (93.26%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA+CRICQE FSTT+
Sbjct: 1   MGKRKSRAKPPPRKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEATCRICQESFSTTV 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDAA 104
           TALTEPIDIYSEWIDECERVNNLEEDD A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDDGA 89

[Close]

BLAST of Moc10g10290 vs. NCBI nr
Match: PON57115.1 (Transcription elongation factor [Trema orientale] >PON77937.1 Transcription elongation factor [Parasponia andersonii])

HSP 1 Score: 181.8 bits (460), Expect = 3.0e-42
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDA 103
           TALTEPIDIYSEWIDECERVNNLEED A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of Moc10g10290 vs. NCBI nr
Match: MQL96011.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 181.4 bits (459), Expect = 3.9e-42
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 75  TALTEPIDIYSEWIDECERVNNLE-EDDAA 104
           TAL+EPID+YSEWIDECERVNNLE EDDAA
Sbjct: 61  TALSEPIDVYSEWIDECERVNNLEVEDDAA 90

[Close]

BLAST of Moc10g10290 vs. ExPASy Swiss-Prot
Match: Q8LHP0 (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.7e-44
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE FSTT+
Sbjct: 1   MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDAA 104
            ALTEPIDIYSEWIDECERVNN+E+DD A
Sbjct: 61  NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Moc10g10290 vs. ExPASy Swiss-Prot
Match: Q8LEF3 (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.1e-38
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEED 101
           TALTE IDIYSEWIDECERVN  E+D
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Moc10g10290 vs. ExPASy Swiss-Prot
Match: P36053 (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-20
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 15 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
          MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC + F T I
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 75 TALTEPIDIYSEWIDECERVNN 97
           +L++P+D+YS+W D  E VN+
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of Moc10g10290 vs. ExPASy Swiss-Prot
Match: A4IFR3 (Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 15 MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTT 74
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 75 ITALTEPIDIYSEWIDECERVN 96
          IT L+EP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Moc10g10290 vs. ExPASy Swiss-Prot
Match: P60002 (Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 15 MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTT 74
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 75 ITALTEPIDIYSEWIDECERVN 96
          IT L+EP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Moc10g10290 vs. ExPASy TrEMBL
Match: A0A6J1CNR1 (Transcription elongation factor 1 homolog OS=Momordica charantia OX=3673 GN=LOC111012788 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.1e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDAA 104
           TALTEPIDIYSEWIDECERVNNLEEDDAA
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDDAA 89

[Close]

BLAST of Moc10g10290 vs. ExPASy TrEMBL
Match: W9R774 (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 8.5e-43
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDA 103
           TALTEPIDIYSEWIDECERVNNLE+D A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Moc10g10290 vs. ExPASy TrEMBL
Match: A0A199USR0 (Transcription elongation factor 1 homolog OS=Ananas comosus OX=4615 GN=LOC109718559 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 83/89 (93.26%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA+CRICQE FSTT+
Sbjct: 1   MGKRKSRAKPPPRKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEATCRICQESFSTTV 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDAA 104
           TALTEPIDIYSEWIDECERVNNLEEDD A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDDGA 89

[Close]

BLAST of Moc10g10290 vs. ExPASy TrEMBL
Match: A0A2P5DXC0 (Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_022910 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDA 103
           TALTEPIDIYSEWIDECERVNNLEED A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of Moc10g10290 vs. ExPASy TrEMBL
Match: A0A2P5C7Z2 (Transcription elongation factor 1 homolog OS=Trema orientale OX=63057 GN=TorRG33x02_294290 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.5e-42
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQE FSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEEDDA 103
           TALTEPIDIYSEWIDECERVNNLEED A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of Moc10g10290 vs. TAIR 10
Match: AT5G46030.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 157.9 bits (398), Expect = 4.3e-39
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 15  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 74
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+E FSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 75  TALTEPIDIYSEWIDECERVNNLEED 101
           TALTE IDIYSEWIDECERVN  E+D
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

The following BLAST results are available for this feature:

BLAST of Moc10g10290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142747.1	8.4e-45	100.00	transcription elongation factor 1 homolog [Momordica charantia]	[more]
XP_010090451.1	1.8e-42	96.59	transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509...	[more]
XP_020100434.1	2.3e-42	93.26	transcription elongation factor 1 homolog [Ananas comosus] >XP_020100436.1 trans...	[more]
PON57115.1	3.0e-42	95.45	Transcription elongation factor [Trema orientale] >PON77937.1 Transcription elon...	[more]
MQL96011.1	3.9e-42	95.56	hypothetical protein [Colocasia esculenta]	[more]

BLAST of Moc10g10290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LHP0	5.7e-44	91.01	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q8LEF3	6.1e-38	83.72	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
P36053	1.2e-20	51.22	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
A4IFR3	1.5e-20	53.66	Transcription elongation factor 1 homolog OS=Bos taurus OX=9913 GN=ELOF1 PE=3 SV...	[more]
P60002	1.5e-20	53.66	Transcription elongation factor 1 homolog OS=Homo sapiens OX=9606 GN=ELOF1 PE=1 ...	[more]

BLAST of Moc10g10290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNR1	4.1e-45	100.00	Transcription elongation factor 1 homolog OS=Momordica charantia OX=3673 GN=LOC1...	[more]
W9R774	8.5e-43	96.59	Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0...	[more]
A0A199USR0	1.1e-42	93.26	Transcription elongation factor 1 homolog OS=Ananas comosus OX=4615 GN=LOC109718...	[more]
A0A2P5DXC0	1.5e-42	95.45	Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=Pa...	[more]
A0A2P5C7Z2	1.5e-42	95.45	Transcription elongation factor 1 homolog OS=Trema orientale OX=63057 GN=TorRG33...	[more]

BLAST of Moc10g10290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46030.1	4.3e-39	83.72	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701,...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 16..92 e-value: 4.7E-31 score: 106.6
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 10..102
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	2.20.25.190		coord: 30..96 e-value: 1.6E-29 score: 103.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 15..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g10290.1	Moc10g10290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0008023	transcription elongation factor complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II complex binding
molecular_function	GO:0003746	translation elongation factor activity