Moc10g09560 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g09560
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionprotein RALF-like 9
Locationchr10: 7128041 .. 7128537 (-)
RNA-Seq ExpressionMoc10g09560
SyntenyMoc10g09560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAACTTTATTGTAATTTTCTCAATTAGTATTGCCATGATTGAGATTACAAATGCGATACGATACATTAGTTTTGGTGCTCTAGAAATTGATAAATTAGGTGCTTTTGAATGTAGTCCTGAAGATCCCAAACTTTGTTTAACACATAAAGCCAACCGATATCAAAGAGGTTGTTCTGCACTTGATCGTTGCAGGGGAGGCTAGGAAGATGCTATCATAAGTAGGGAACAAAATATTCTTGTGCAGGAAACAATATCATAGATAGGGAAGCCAAGATTCTGCAAGGCGATACAAGAAATGATATCGTAGACTGTGAAGAAAAGATTCCTGAAGACAGTGCAAGCAAGATTTATTTTTTATTTTTTTTTTTATTACCCAGTAATCGGCTGCTCTTTGGCCTTTATGTCCCAATACCTGGGGTATGTACATTATCCCCATACCCGTACATACTCAAGGGGTCATTGCTTGGTGGAATTGCATTCCATGTGACTTAA

mRNA sequence

ATGCTCAACTTTATTGTAATTTTCTCAATTAGTATTGCCATGATTGAGATTACAAATGCGATACGATACATTAGTTTTGGTGCTCTAGAAATTGATAAATTAGGTGCTTTTGAATGTAGTCCTGAAGATCCCAAACTTTGTTTAACACATAAAGCCAACCGATATCAAAGAGGAAACAATATCATAGATAGGGAAGCCAAGATTCTGCAAGGCGATACAAGAAATGATATCGTAGACTGTGAAGAAAAGATTCCTGAAGACAGTGCAAGCAAGATTTATTTTTTATTTTTTTTTTTATTACCCAGTAATCGGCTGCTCTTTGGCCTTTATGTCCCAATACCTGGGGTATGTACATTATCCCCATACCCGTACATACTCAAGGGGTCATTGCTTGGTGGAATTGCATTCCATGTGACTTAA

Coding sequence (CDS)

ATGCTCAACTTTATTGTAATTTTCTCAATTAGTATTGCCATGATTGAGATTACAAATGCGATACGATACATTAGTTTTGGTGCTCTAGAAATTGATAAATTAGGTGCTTTTGAATGTAGTCCTGAAGATCCCAAACTTTGTTTAACACATAAAGCCAACCGATATCAAAGAGGAAACAATATCATAGATAGGGAAGCCAAGATTCTGCAAGGCGATACAAGAAATGATATCGTAGACTGTGAAGAAAAGATTCCTGAAGACAGTGCAAGCAAGATTTATTTTTTATTTTTTTTTTTATTACCCAGTAATCGGCTGCTCTTTGGCCTTTATGTCCCAATACCTGGGGTATGTACATTATCCCCATACCCGTACATACTCAAGGGGTCATTGCTTGGTGGAATTGCATTCCATGTGACTTAA

Protein sequence

MLNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRGNNIIDREAKILQGDTRNDIVDCEEKIPEDSASKIYFLFFFLLPSNRLLFGLYVPIPGVCTLSPYPYILKGSLLGGIAFHVT
Homology
BLAST of Moc10g09560 vs. NCBI nr
Match: XP_022136918.1 (uncharacterized protein LOC111008495 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-08
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 1  MLNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRGNN 60
          ML FI I  +S  MIEITNAI+YI++ AL+ D      CSP+ P LC  H+AN YQRG +
Sbjct: 8  MLVFIGILLVSFRMIEITNAIQYINYHALKTDVSPG--CSPKHPGLCKLHEANSYQRGCS 67

Query: 61 IIDREAKILQGDTRNDIVDCEEKIPEDSASKI 93
           I+R         R+D +D EEKI  D+ + I
Sbjct: 68 AINR-------CRRDDYIDSEEKIKGDAKNHI 90

BLAST of Moc10g09560 vs. NCBI nr
Match: XP_022961577.1 (protein RALF-like 9 [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-06
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 1  MLNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRGNN 60
          M+ FIV+  +SI MIEITNA  YI++  L+  K     CSP  P LC T  AN YQRG N
Sbjct: 6  MIIFIVVLFVSINMIEITNATHYINYDPLK--KNRDLVCSPTHPDLCKTTPANPYQRGCN 65

Query: 61 IIDREAKILQGDTRNDIVDCEEK 84
           IDR     +G   +DI+D +E+
Sbjct: 66 PIDR----CRGAESDDIIDNDEE 82

BLAST of Moc10g09560 vs. NCBI nr
Match: XP_023546462.1 (protein RALF-like 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 5.2e-05
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 1  MLNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRGNN 60
          M+ FIV+  +SI MIEITNA  YI++  L+  K     CSP  P LC    AN YQRG N
Sbjct: 1  MVIFIVVLFVSINMIEITNATHYINYDPLK--KNRDLVCSPTHPDLCKKIPANPYQRGCN 60

Query: 61 IIDREAKILQGDTRNDIVDCEEK 84
           IDR     +G   +DI+D +E+
Sbjct: 61 PIDR----CRGAESDDIIDNDEE 77

BLAST of Moc10g09560 vs. NCBI nr
Match: KAE8650705.1 (hypothetical protein Csa_010421 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 0

Query: 2  LNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRGNNI 61
          L FI I  +S  MI ITNA ++I +G++    +    CSP  P+LC    AN YQRG N 
Sbjct: 9  LVFIGILLVSFDMIMITNAKKFIDYGSIVAGDVSP-GCSPTHPELCRVKSANPYQRGCNR 68

Query: 62 IDREAKILQGDTRNDIVDCEEKIPEDSAS 91
          IDR  +       NDI+D EE+  E  AS
Sbjct: 69 IDRCRE------GNDIIDAEEEHIEGDAS 90

BLAST of Moc10g09560 vs. NCBI nr
Match: XP_022159360.1 (uncharacterized protein LOC111025777 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-04
Identity = 39/115 (33.91%), Postives = 52/115 (45.22%), Query Frame = 0

Query: 1   MLNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRG-- 60
           M  F+ I    + MI+ITNA R+I +  L  D      CSP  P+LC  H AN Y+RG  
Sbjct: 8   MFIFVGILLYCMGMIDITNATRFIHYDPLRGDVSPG--CSPTHPELCKLHSANPYKRGCT 67

Query: 61  ------------------------NNIIDREAKILQGDTRNDIVDCEEKIPEDSA 90
                                   N I D + KIL+ DT+ND++   EKI +  A
Sbjct: 68  SIDRCRGGSDIIDDAEMIVEGDAENKIKDSKTKILKSDTKNDLIGGAEKIVKGDA 120

BLAST of Moc10g09560 vs. ExPASy TrEMBL
Match: A0A6J1C8U5 (uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008495 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 1  MLNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRGNN 60
          ML FI I  +S  MIEITNAI+YI++ AL+ D      CSP+ P LC  H+AN YQRG +
Sbjct: 8  MLVFIGILLVSFRMIEITNAIQYINYHALKTDVSPG--CSPKHPGLCKLHEANSYQRGCS 67

Query: 61 IIDREAKILQGDTRNDIVDCEEKIPEDSASKI 93
           I+R         R+D +D EEKI  D+ + I
Sbjct: 68 AINR-------CRRDDYIDSEEKIKGDAKNHI 90

BLAST of Moc10g09560 vs. ExPASy TrEMBL
Match: A0A6J1HAJ8 (protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 1  MLNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRGNN 60
          M+ FIV+  +SI MIEITNA  YI++  L+  K     CSP  P LC T  AN YQRG N
Sbjct: 6  MIIFIVVLFVSINMIEITNATHYINYDPLK--KNRDLVCSPTHPDLCKTTPANPYQRGCN 65

Query: 61 IIDREAKILQGDTRNDIVDCEEK 84
           IDR     +G   +DI+D +E+
Sbjct: 66 PIDR----CRGAESDDIIDNDEE 82

BLAST of Moc10g09560 vs. ExPASy TrEMBL
Match: A0A0A0L8B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-05
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 0

Query: 2  LNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRGNNI 61
          L FI I  +S  MI ITNA ++I +G++    +    CSP  P+LC    AN YQRG N 
Sbjct: 9  LVFIGILLVSFDMIMITNARKFIDYGSIVAGDVSP-GCSPTHPELCRVKSANPYQRGCNR 68

Query: 62 IDREAKILQGDTRNDIVDCEEKIPEDSAS 91
          IDR  +       NDI+D EE+  E  AS
Sbjct: 69 IDRCRE------GNDIIDAEEEHIEGDAS 90

BLAST of Moc10g09560 vs. ExPASy TrEMBL
Match: A0A6J1DYH7 (uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025777 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 39/115 (33.91%), Postives = 52/115 (45.22%), Query Frame = 0

Query: 1   MLNFIVIFSISIAMIEITNAIRYISFGALEIDKLGAFECSPEDPKLCLTHKANRYQRG-- 60
           M  F+ I    + MI+ITNA R+I +  L  D      CSP  P+LC  H AN Y+RG  
Sbjct: 8   MFIFVGILLYCMGMIDITNATRFIHYDPLRGDVSPG--CSPTHPELCKLHSANPYKRGCT 67

Query: 61  ------------------------NNIIDREAKILQGDTRNDIVDCEEKIPEDSA 90
                                   N I D + KIL+ DT+ND++   EKI +  A
Sbjct: 68  SIDRCRGGSDIIDDAEMIVEGDAENKIKDSKTKILKSDTKNDLIGGAEKIVKGDA 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136918.13.8e-0846.74uncharacterized protein LOC111008495 [Momordica charantia][more]
XP_022961577.16.1e-0646.99protein RALF-like 9 [Cucurbita moschata][more]
XP_023546462.15.2e-0545.78protein RALF-like 9 [Cucurbita pepo subsp. pepo][more]
KAE8650705.11.5e-0442.70hypothetical protein Csa_010421 [Cucumis sativus][more]
XP_022159360.13.4e-0433.91uncharacterized protein LOC111025777 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C8U51.9e-0846.74uncharacterized protein LOC111008495 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1HAJ83.0e-0646.99protein RALF-like 9 OS=Cucurbita moschata OX=3662 GN=LOC111462118 PE=3 SV=1[more]
A0A0A0L8B17.3e-0542.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426350 PE=3 SV=1[more]
A0A6J1DYH71.6e-0433.91uncharacterized protein LOC111025777 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g09560.1Moc10g09560.1mRNA