Moc10g08960 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g08960
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase
Locationchr10: 6604735 .. 6606341 (+)
RNA-Seq ExpressionMoc10g08960
SyntenyMoc10g08960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACAACCGCCCTTGGTTCTCTGCCCTTAACCGACAAAAGTTCTTCCTCGTCCACTATCCTAAAATATACCCTCAGAAAAGGTAAACTTATTATTATTATTATTATTTATTATTTTCATTATTTTATGTTCTTTCCTGGCATGGTAGATGGACGTGGCTGTGGTTCTGGTTTAAACAAATCGCGACTCCAAATACAGAGGCCACTATCTCCGACCATCCTCCCAGCAAATTTTTGGAGATACCAAATTAAATCAAACACTCACTAATGTCTTAATAGAACAAAATAATCAAAGAACCAAGAGACCACTGTCAGCCATGCTTTCCCATCATTTTGGAATAATCAATTTGCCTATTTAATGCAACAATTTTGAGTTGAAATCTGGCCTTTGTCCGGATGGTTCAAGAAAAGCCCTTCAGGGGCAATCCACAGAAGATCCAAACAACTATTTAAAAATGTTTTTAGATGTTTGTGGTACTGTTAAGATCAAGGGGAAAACTGACGATGCTATTCGCTTACGTCTTTTAATTTCCTTTTTCTTTGCAACCCAATAGTGTTAATTCTTAGTAGGGGATGGTTCAAGCGTTTCTCACAAAAATTTTCCCACCTGCCAAGACAACTCAACGTAGAAAAGAGATTGGATCATTCAGGCAATATGATTATGAGCAATTATTTGAGGCCTAGGAGAGGTACAAGGAGCTTTTGAGGAAATGTCCACAACATGGTTATCCGGATTGACTACAAATTCAAATGTTTTACAAGGGACTAAATGGACAAACAAGAACTATGCTGGATGCTGCAGTTGGAGGCACTTTACTCTCCAAAACACTAGAGAATGCCTATATCTTACTAGAGGATATGTCATCCAATAGCTTTCAATAGCCTAGTGAAAGATCGAATGCCAAAAGAACCGTTGGAATCTATGAAATTGATGAGGTAAGTTCCTTGAAAGCTCAAGTTCAAACTCTAACAACTGCTGTGTCTAAACTTTTAGGTCTAGGAGCTTCTCATTCAAATGAATTGGTGGCAACAGAAAATGAGTATTCCTATTATGAGGAGCCAACCATCGAGCAAGCTCAATATGTCAATAAGAGAAAATTTTGGCTACAAAAAAAATCATGCTCAAAACTAAATGCCGACACACTATCATCTATGATTGAGGAATCATGAATTTTTCTTTTGCTAACAACATTGCAACTTCTACCGGGCTTTACATCTCAGCCAGCTGAAAAGAAATCATCTCTTGAGGATTTACTTGGGGCTTTTATCAATGAGTCTAGGAGTCGAGCCAATCGAATTGAAAATCAGGTAGAAAATATGGAAGTTAAGTTAGAAGGAAGTACAATTGTCATCAAGACTATGGAGATACAAATAGGGCAAATAACTTCCACCTTGAAGACTATGCAAATAGGGAAATTCCCAACTGACACTGAAATCAACCCACGAGAGCATTGCAAAGCTGTCACTTTGAGAAGCAGAAAGGAGCTCCAGGAGCCTAAACATAAACAAATTGAAGAACCAATCGGTACAACTAAGGAAGAGGGAAATAAGGAGGACGTTGTGAAGGAGACCACTCCTACACTTAAAGGCTACCGGGCCTACTAG

mRNA sequence

ATGAGAACAACCGCCCTTGGTTCTCTGCCCTTAACCGACAAAAGTTCTTCCTCGTCCACTATCCTAAAATATACCCTCAGAAAAGGTCTAGGAGCTTCTCATTCAAATGAATTGGTGGCAACAGAAAATGAGTATTCCTATTATGAGGAGCCAACCATCGAGCAAGCTCAATATCCAGCTGAAAAGAAATCATCTCTTGAGGATTTACTTGGGGCTTTTATCAATGAGTCTAGGAGTCGAGCCAATCGAATTGAAAATCAGGTAGAAAATATGGAAGTTAAGTTAGAAGGAAGTACAATTGTCATCAAGACTATGGAGATACAAATAGGGCAAATAACTTCCACCTTGAAGACTATGCAAATAGGGAAATTCCCAACTGACACTGAAATCAACCCACGAGAGCATTGCAAAGCTGTCACTTTGAGAAGCAGAAAGGAGCTCCAGGAGCCTAAACATAAACAAATTGAAGAACCAATCGGTACAACTAAGGAAGAGGGAAATAAGGAGGACGTTGTGAAGGAGACCACTCCTACACTTAAAGGCTACCGGGCCTACTAG

Coding sequence (CDS)

ATGAGAACAACCGCCCTTGGTTCTCTGCCCTTAACCGACAAAAGTTCTTCCTCGTCCACTATCCTAAAATATACCCTCAGAAAAGGTCTAGGAGCTTCTCATTCAAATGAATTGGTGGCAACAGAAAATGAGTATTCCTATTATGAGGAGCCAACCATCGAGCAAGCTCAATATCCAGCTGAAAAGAAATCATCTCTTGAGGATTTACTTGGGGCTTTTATCAATGAGTCTAGGAGTCGAGCCAATCGAATTGAAAATCAGGTAGAAAATATGGAAGTTAAGTTAGAAGGAAGTACAATTGTCATCAAGACTATGGAGATACAAATAGGGCAAATAACTTCCACCTTGAAGACTATGCAAATAGGGAAATTCCCAACTGACACTGAAATCAACCCACGAGAGCATTGCAAAGCTGTCACTTTGAGAAGCAGAAAGGAGCTCCAGGAGCCTAAACATAAACAAATTGAAGAACCAATCGGTACAACTAAGGAAGAGGGAAATAAGGAGGACGTTGTGAAGGAGACCACTCCTACACTTAAAGGCTACCGGGCCTACTAG

Protein sequence

MRTTALGSLPLTDKSSSSSTILKYTLRKGLGASHSNELVATENEYSYYEEPTIEQAQYPAEKKSSLEDLLGAFINESRSRANRIENQVENMEVKLEGSTIVIKTMEIQIGQITSTLKTMQIGKFPTDTEINPREHCKAVTLRSRKELQEPKHKQIEEPIGTTKEEGNKEDVVKETTPTLKGYRAY
Homology
BLAST of Moc10g08960 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 208.0 bits (528), Expect = 7.0e-50
Identity = 114/155 (73.55%), Postives = 128/155 (82.58%), Query Frame = 0

Query: 29  GLGASHSNELVATENEYSYYEEPTIEQAQY---PAEKKSSLEDLLGAFINESRSRANRIE 88
           G G SHSNELVA  + YSYY EPTIEQAQ+   PAEKKSSLEDLLGAFINE RSRA+RIE
Sbjct: 252 GPGTSHSNELVAATDTYSYY-EPTIEQAQFTSHPAEKKSSLEDLLGAFINECRSRASRIE 311

Query: 89  NQVENMEVKLEGSTIVIKTMEIQIGQITSTLKTMQIGKFPTDTEINPREHCKAVTLRSRK 148
           NQVE MEVKLEG+T  IK ME+QIGQI  TL TMQ GKFP+D E+ PREHCKAVTLRS K
Sbjct: 312 NQVEGMEVKLEGNTTSIKNMEVQIGQIAPTLNTMQKGKFPSDIEVKPREHCKAVTLRSGK 371

Query: 149 ELQEPKHKQIEEPIGTTKEEGNKEDVVKETTPTLK 181
           ELQEP+ K++EEP+ TT+E  NKE+VVKE TP L+
Sbjct: 372 ELQEPEKKKMEEPVITTEERENKEEVVKEATPALQ 405

BLAST of Moc10g08960 vs. NCBI nr
Match: XP_022159119.1 (uncharacterized protein LOC111025551 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 5.4e-26
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0

Query: 91  MEVKLEGSTIVIKTMEIQIGQITSTLKTMQIGKFPTDTEINPREHCKAVTLRSRKELQEP 150
           MEVKLEG+T  IK ME+QIGQ+ STL  MQ GKFP+DTE+NPREHCKAVTLRS KELQEP
Sbjct: 1   MEVKLEGNTTAIKNMEVQIGQMASTLNIMQKGKFPSDTEVNPREHCKAVTLRSGKELQEP 60

Query: 151 KHKQIEEPIGTTKEEGNKEDVVKETTPTLK 181
           + K++EEP+ TT+E  NKE+VVKE TPTL+
Sbjct: 61  EKKKMEEPVITTEERENKEEVVKEATPTLQ 90

BLAST of Moc10g08960 vs. NCBI nr
Match: XP_022868848.1 (uncharacterized protein LOC111388394 [Olea europaea var. sylvestris])

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-17
Identity = 52/123 (42.28%), Postives = 79/123 (64.23%), Query Frame = 0

Query: 60  AEKKSSLEDLLGAFINESRSRANRIENQVENMEVKLEGSTIVIKTMEIQIGQITSTLKTM 119
           ++ K  LED+LG FI+E+RSR N+ E +++N+E  +      +K +E+QIGQ+ +++K+ 
Sbjct: 146 SDGKPPLEDILGTFISETRSRFNKNELRLDNIETHVSNMGATMKNLEVQIGQLATSIKSQ 205

Query: 120 QIGKFPTDTEINPREHCKAVTLRSRKELQEPKHKQIEEPIGTTKEEGNKEDVVKETTPTL 179
           Q GKFP+DTE+NPREHC A+TLRS K ++E K K+I  P         ++    E T   
Sbjct: 206 QKGKFPSDTEVNPREHCNAITLRSGKMVEESKPKKIVVPTSDVIVTDERQKTEPEGTKIY 265

Query: 180 KGY 183
           K Y
Sbjct: 266 KPY 268

BLAST of Moc10g08960 vs. NCBI nr
Match: XP_022892010.1 (uncharacterized protein LOC111406878 [Olea europaea var. sylvestris])

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-17
Identity = 54/127 (42.52%), Postives = 81/127 (63.78%), Query Frame = 0

Query: 61  EKKSSLEDLLGAFINESRSRANRIENQVENMEVKLEGSTIVIKTMEIQIGQITSTLKTMQ 120
           E+K SLED+LG FI+E+RSR N+ E +++N+E+ +      +K +E+QIGQI + +++ Q
Sbjct: 46  ERKPSLEDILGTFISETRSRFNKDEARLDNIEIHMTNLGATVKNLEVQIGQIATAIQSQQ 105

Query: 121 IGKFPTDTEINPREHCKAVTLRSRKELQEPKHKQIEEPIG--TTKEEGNKEDVVKETTPT 180
            G+FP+D E+NPREHC A+TLRS K ++E K ++   P        E   E    ET  T
Sbjct: 106 KGQFPSDIEVNPREHCNAITLRSGKAVEERKLREAGVPTSDPILTREKQTEGQKTETEAT 165

Query: 181 LKGYRAY 186
            K Y+ Y
Sbjct: 166 KKIYKPY 172

BLAST of Moc10g08960 vs. NCBI nr
Match: XP_022855495.1 (uncharacterized protein LOC111376753 [Olea europaea var. sylvestris])

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-17
Identity = 53/127 (41.73%), Postives = 83/127 (65.35%), Query Frame = 0

Query: 60  AEKKSSLEDLLGAFINESRSRANRIENQVENMEVKLEGSTIVIKTMEIQIGQITSTLKTM 119
           ++ K  LED+LG FI+E+RSR N+ E +++N+E  +      +K +E+QIGQ+ +++K+ 
Sbjct: 66  SDGKPPLEDILGTFISETRSRFNKNELRLDNIETHVSNMGATMKNLEVQIGQLATSMKSQ 125

Query: 120 QIGKFPTDTEINPREHCKAVTLRSRKELQEPKHKQIEEP----IGTTKEEGNKEDVVKET 179
           Q GKFP+DTE+NPREHC A+TLRS + ++E K K+I  P    I T + +  ++    E 
Sbjct: 126 QKGKFPSDTEVNPREHCNAITLRSGQMVEESKPKKIMVPTSDVIVTDERQSERQKTKPEG 185

Query: 180 TPTLKGY 183
           T   K Y
Sbjct: 186 TKIYKPY 192

BLAST of Moc10g08960 vs. ExPASy TrEMBL
Match: A0A6J1DU19 (uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024361 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.4e-50
Identity = 114/155 (73.55%), Postives = 128/155 (82.58%), Query Frame = 0

Query: 29  GLGASHSNELVATENEYSYYEEPTIEQAQY---PAEKKSSLEDLLGAFINESRSRANRIE 88
           G G SHSNELVA  + YSYY EPTIEQAQ+   PAEKKSSLEDLLGAFINE RSRA+RIE
Sbjct: 252 GPGTSHSNELVAATDTYSYY-EPTIEQAQFTSHPAEKKSSLEDLLGAFINECRSRASRIE 311

Query: 89  NQVENMEVKLEGSTIVIKTMEIQIGQITSTLKTMQIGKFPTDTEINPREHCKAVTLRSRK 148
           NQVE MEVKLEG+T  IK ME+QIGQI  TL TMQ GKFP+D E+ PREHCKAVTLRS K
Sbjct: 312 NQVEGMEVKLEGNTTSIKNMEVQIGQIAPTLNTMQKGKFPSDIEVKPREHCKAVTLRSGK 371

Query: 149 ELQEPKHKQIEEPIGTTKEEGNKEDVVKETTPTLK 181
           ELQEP+ K++EEP+ TT+E  NKE+VVKE TP L+
Sbjct: 372 ELQEPEKKKMEEPVITTEERENKEEVVKEATPALQ 405

BLAST of Moc10g08960 vs. ExPASy TrEMBL
Match: A0A6J1E1F6 (uncharacterized protein LOC111025551 OS=Momordica charantia OX=3673 GN=LOC111025551 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 0

Query: 91  MEVKLEGSTIVIKTMEIQIGQITSTLKTMQIGKFPTDTEINPREHCKAVTLRSRKELQEP 150
           MEVKLEG+T  IK ME+QIGQ+ STL  MQ GKFP+DTE+NPREHCKAVTLRS KELQEP
Sbjct: 1   MEVKLEGNTTAIKNMEVQIGQMASTLNIMQKGKFPSDTEVNPREHCKAVTLRSGKELQEP 60

Query: 151 KHKQIEEPIGTTKEEGNKEDVVKETTPTLK 181
           + K++EEP+ TT+E  NKE+VVKE TPTL+
Sbjct: 61  EKKKMEEPVITTEERENKEEVVKEATPTLQ 90

BLAST of Moc10g08960 vs. ExPASy TrEMBL
Match: A0A2P5BPI6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_313500 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 51/115 (44.35%), Postives = 81/115 (70.43%), Query Frame = 0

Query: 60  AEKKSSLEDLLGAFINESRSRANRIENQVENMEVKLEGSTIVIKTMEIQIGQITSTLKTM 119
           +EKKSSLEDLL  FI E+R + N+ E +++N+E         +K++E+QIGQ+ +++K  
Sbjct: 39  SEKKSSLEDLLSTFIVETRRKFNKDEARLDNIETHCNNMNATMKSLEVQIGQLANSIKGQ 98

Query: 120 QIGKFPTDTEINPREHCKAVTLRSRKELQEPKHKQIEEPIGTTKEEGNKEDVVKE 175
           Q GKFP+DTE NP++HCKA+TLR+ KE++     +++E +G    +  KE+VV+E
Sbjct: 99  QSGKFPSDTETNPKDHCKAITLRNGKEVEV---SRLKENVG----DMTKENVVEE 146

BLAST of Moc10g08960 vs. ExPASy TrEMBL
Match: A0A2P5AMA4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_346970 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-15
Identity = 48/126 (38.10%), Postives = 78/126 (61.90%), Query Frame = 0

Query: 33  SHSNELVATENEYSYYE-----EPTIEQAQYPAEKKSSLEDLLGAFINESRSRANRIENQ 92
           +H + ++     +SY       +P +   Q  AEKK SL+D+L  FI E++ R N+ E +
Sbjct: 93  THYHPVLRNHENFSYANNRNVLQPPLGFNQPVAEKKPSLKDILSTFIMETKGRFNKDEAR 152

Query: 93  VENMEVKLEGSTIVIKTMEIQIGQITSTLKTMQIGKFPTDTEINPREHCKAVTLRSRKEL 152
           ++N+E         +K++E+QI Q+ +++K     KFP+DTE NP++HCK +TLRSRKE+
Sbjct: 153 IDNIETHCNNINATMKSLEVQIRQLANSIKGQIFRKFPSDTETNPKDHCKTITLRSRKEV 212

Query: 153 QEPKHK 154
           + PK K
Sbjct: 213 EVPKQK 218

BLAST of Moc10g08960 vs. ExPASy TrEMBL
Match: A0A2P5B1T0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_279370 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 0

Query: 33  SHSNELVATENEYSYYEEPTIEQA-----QYPAEKKSSLEDLLGAFINESRSRANRIENQ 92
           +H +  +     +SY     + Q      Q  AEKK SLED+L  FI E+R R  + E  
Sbjct: 94  THYHPGLCNHENFSYTNNRNVLQPPSGLNQSVAEKKPSLEDILSTFIMETRGRFKKYEAC 153

Query: 93  VENMEVKLEGSTIVIKTMEIQIGQITSTLKTMQIGKFPTDTEINPREHCKAVTLRSRKEL 151
           ++N+E         IK++E+QIGQ+ +++K    GKFP DTE NP+ HCKA+TLRS KE+
Sbjct: 154 LDNIENHCNNMNATIKSLEVQIGQLANSIKGQISGKFPNDTETNPKYHCKAITLRSGKEV 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157708.17.0e-5073.55uncharacterized protein LOC111024361 [Momordica charantia][more]
XP_022159119.15.4e-2672.22uncharacterized protein LOC111025551 [Momordica charantia][more]
XP_022868848.12.7e-1742.28uncharacterized protein LOC111388394 [Olea europaea var. sylvestris][more]
XP_022892010.12.7e-1742.52uncharacterized protein LOC111406878 [Olea europaea var. sylvestris][more]
XP_022855495.14.6e-1741.73uncharacterized protein LOC111376753 [Olea europaea var. sylvestris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU193.4e-5073.55uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1E1F62.6e-2672.22uncharacterized protein LOC111025551 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A2P5BPI61.9e-1644.35Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_313500 PE=4 SV... [more]
A0A2P5AMA43.6e-1538.10Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_346970 PE=4 SV... [more]
A0A2P5B1T02.3e-1440.65Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_279370 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g08960.1Moc10g08960.1mRNA