Moc10g08580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g08580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	chr10: 6314960 .. 6315682 (-)
RNA-Seq Expression	Moc10g08580
Synteny	Moc10g08580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCATCTCCCTCCCCACTCCGCATCTCAAATCCACCTTCCTCGGCCAAAACCGCCGCCGCTTCCTTCCCCACCGCCGATTCCCCCTTCCCCAGCGAGCCTCATCGAGCCATCGCGTTTTCCGGCCCGCCGCCGAGTTCGATTTGGGTCAGCTTCTCGGCGGGAGAGGCCTCTGCAATGGCGAGCGAGGTCTGAGAGAGGAGCTGAAGAGAGACGTTGCGGAGATTCCGGCGGAAATAGGGGGTGAAATTCCTGAAATCCCCGAGAAATCGGCCGCCGCTGGGGTTTCGGAAGATGGATTCGAGAAGGAATTGATGGGCCTAACCGGCGGATTTCCCGGCGGAGAGAAGGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCTCCGACTCCGAAAGCGAAACCGCCCGCTTCAAATTCCGGCGAAATCGGTGCGATTATGAGTTCGCAGAAGCCGAAGCCGCCGGATCTGCCGCTGCTGCTGCCGGGAATGATCGCGATTGTGAAGAATCCGAACAATCCGTACTACATGTACTGCGGAATTGTTCAGAGAATCACAGATGGAAAGGCAGGGGTTCTTTTCGAAGGGGGAAATTGGGATCGATTGATCACGTTCAGGCTGGATGAACTCGAACGAAGAGAAAAAGGACCTCCAATGAAGAACCCTAGATCGGCTGTTCTAGAACCGCTTCTTCAAAAGGATTCTCAATGA

mRNA sequence

ATGGCGTCCTCCATCTCCCTCCCCACTCCGCATCTCAAATCCACCTTCCTCGGCCAAAACCGCCGCCGCTTCCTTCCCCACCGCCGATTCCCCCTTCCCCAGCGAGCCTCATCGAGCCATCGCGTTTTCCGGCCCGCCGCCGAGTTCGATTTGGGTCAGCTTCTCGGCGGGAGAGGCCTCTGCAATGGCGAGCGAGGTCTGAGAGAGGAGCTGAAGAGAGACGTTGCGGAGATTCCGGCGGAAATAGGGGGTGAAATTCCTGAAATCCCCGAGAAATCGGCCGCCGCTGGGGTTTCGGAAGATGGATTCGAGAAGGAATTGATGGGCCTAACCGGCGGATTTCCCGGCGGAGAGAAGGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCTCCGACTCCGAAAGCGAAACCGCCCGCTTCAAATTCCGGCGAAATCGGTGCGATTATGAGTTCGCAGAAGCCGAAGCCGCCGGATCTGCCGCTGCTGCTGCCGGGAATGATCGCGATTGTGAAGAATCCGAACAATCCGTACTACATGTACTGCGGAATTGTTCAGAGAATCACAGATGGAAAGGCAGGGGTTCTTTTCGAAGGGGGAAATTGGGATCGATTGATCACGTTCAGGCTGGATGAACTCGAACGAAGAGAAAAAGGACCTCCAATGAAGAACCCTAGATCGGCTGTTCTAGAACCGCTTCTTCAAAAGGATTCTCAATGA

Coding sequence (CDS)

ATGGCGTCCTCCATCTCCCTCCCCACTCCGCATCTCAAATCCACCTTCCTCGGCCAAAACCGCCGCCGCTTCCTTCCCCACCGCCGATTCCCCCTTCCCCAGCGAGCCTCATCGAGCCATCGCGTTTTCCGGCCCGCCGCCGAGTTCGATTTGGGTCAGCTTCTCGGCGGGAGAGGCCTCTGCAATGGCGAGCGAGGTCTGAGAGAGGAGCTGAAGAGAGACGTTGCGGAGATTCCGGCGGAAATAGGGGGTGAAATTCCTGAAATCCCCGAGAAATCGGCCGCCGCTGGGGTTTCGGAAGATGGATTCGAGAAGGAATTGATGGGCCTAACCGGCGGATTTCCCGGCGGAGAGAAGGGATTGCGGAAATTCATATCGGAAAATCCTCCTCCTCCTCCGACTCCGAAAGCGAAACCGCCCGCTTCAAATTCCGGCGAAATCGGTGCGATTATGAGTTCGCAGAAGCCGAAGCCGCCGGATCTGCCGCTGCTGCTGCCGGGAATGATCGCGATTGTGAAGAATCCGAACAATCCGTACTACATGTACTGCGGAATTGTTCAGAGAATCACAGATGGAAAGGCAGGGGTTCTTTTCGAAGGGGGAAATTGGGATCGATTGATCACGTTCAGGCTGGATGAACTCGAACGAAGAGAAAAAGGACCTCCAATGAAGAACCCTAGATCGGCTGTTCTAGAACCGCTTCTTCAAAAGGATTCTCAATGA

Protein sequence

MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKDSQ

Homology

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BLAST of Moc10g08580 vs. NCBI nr
Match: XP_022136461.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Momordica charantia])

HSP 1 Score: 484.2 bits (1245), Expect = 6.6e-133
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGL 60
           MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGL
Sbjct: 1   MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGL 60

Query: 61  CNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKG 120
           CNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKG
Sbjct: 61  CNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKG 120

Query: 121 LRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYY 180
           LRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 LRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKDSQ 240
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKDSQ 240

[Close]

BLAST of Moc10g08580 vs. NCBI nr
Match: XP_038902579.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902587.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902595.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902601.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902605.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida])

HSP 1 Score: 402.9 bits (1034), Expect = 1.9e-108
Identity = 206/243 (84.77%), Postives = 213/243 (87.65%), Query Frame = 0


Query: 1   MASSISLPTPH---LKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGG 60
           MASSISLPTP    LKSTFLGQNRRRFL HR FPLP RAS +H  FRP+A FDL QLLGG
Sbjct: 1   MASSISLPTPQTPLLKSTFLGQNRRRFLLHRPFPLPHRASPTHHAFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGG 120
           RGLCNGERGL+EELKR+V + P   GGEIPE  EK A   V EDGFEKELMGLTGGFPGG
Sbjct: 61  RGLCNGERGLKEELKRNVEDNPVADGGEIPETSEKLAVDRVPEDGFEKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           EKGLRKFISENPPPPP P  KP ASNS EIGAI+SSQKPKPPDLPLLLPGMIAIVKNPNN
Sbjct: 121 EKGLRKFISENPPPPPRP--KPSASNSSEIGAILSSQKPKPPDLPLLLPGMIAIVKNPNN 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQK 240
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEPLLQ 
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQN 240

[Close]

BLAST of Moc10g08580 vs. NCBI nr
Match: XP_023553886.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 381.3 bits (978), Expect = 6.0e-102
Identity = 199/243 (81.89%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 1   MASSISLPTPH---LKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGG 60
           MASSISLP+P    LKSTFLGQ  RRF  HR+FPLP+RAS SH  FRP+A FDL QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60

Query: 61  RGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGG 120
           RGLCNGE+GL+EELKR+V E    IG EIPE  EK A   V EDGF+KELMGLTGGFPGG
Sbjct: 61  RGLCNGEKGLKEELKRNVVE--ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           EKGLRKFISENPPPPP    KP AS S EIGAI SSQKPKPPDLPLLLPGMIAIVKNPN+
Sbjct: 121 EKGLRKFISENPPPPP---PKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQK 240
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEPLLQK
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 238

[Close]

BLAST of Moc10g08580 vs. NCBI nr
Match: XP_022982522.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima])

HSP 1 Score: 378.6 bits (971), Expect = 3.9e-101
Identity = 197/243 (81.07%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 1   MASSISLPTPH---LKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGG 60
           MASSISLP+P    LKSTFLG+  RRF  HR+FPLP+RAS SH  FRP+A FDL QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGG 120
           RGLCNGE+GL+EELKR+V E    IG EIPE  EK A   V EDGF+KELMGLTGGFPGG
Sbjct: 61  RGLCNGEKGLKEELKRNVVE--ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           EKGLRKFI+ENPPPPP    KP AS S EIGAI SSQKPKPPDLPLLLPGMIAIVKNPN+
Sbjct: 121 EKGLRKFITENPPPPP---PKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQK 240
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEPLLQK
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 238

[Close]

BLAST of Moc10g08580 vs. NCBI nr
Match: KAG7031154.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.5 bits (968), Expect = 8.7e-101
Identity = 197/243 (81.07%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 1   MASSISLPTPH---LKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGG 60
           MASSISLP+P    LKSTFLG+  RRF  HR+FPLP+RA  SH+ FRP+A FDL QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHQTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGG 120
           RGLCNGE+GL+EELKR+V E    IG EIPE  EK A   V EDGF+KELMGLTGGFPGG
Sbjct: 61  RGLCNGEKGLKEELKRNVVE--ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           EKGLRKFISENPPPPP    KP AS S EIGAI SSQKPKPPDLPLLLPGMIAIVKNPN+
Sbjct: 121 EKGLRKFISENPPPPP---PKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQK 240
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEPLLQK
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 238

[Close]

BLAST of Moc10g08580 vs. ExPASy Swiss-Prot
Match: Q9T0A4 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-70
Identity = 139/243 (57.20%), Postives = 180/243 (74.07%), Query Frame = 0


Query: 3   SSISLP---TPHLKSTFLGQNRRRFLPHRR-FPLPQRASSSHRVFRPAAEFDLGQLLGGR 62
           SSI++P   TP  +S FLGQ  +    +R  FP P++ S  ++V +   +F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVS----EDGFEKELMGLTGGF 122
           GLCNGE+G+ +EL+R++ +       E  E   +S  + +S    EDGFEKE+MGLTGGF
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 123

Query: 123 PGGEKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKN 182
           PGGEKGL+ FI +NPPPPP P   PPA    +  A+ + +KPK P LPLL+PGMIAIVKN
Sbjct: 124 PGGEKGLKTFIEKNPPPPPPP---PPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKN 183

Query: 183 PNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPL 238
            N+PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPP KNP+S +LEPL
Sbjct: 184 QNSPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPL 242

[Close]

BLAST of Moc10g08580 vs. ExPASy TrEMBL
Match: A0A6J1C3K2 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008167 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 3.2e-133
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGL 60
           MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGL
Sbjct: 1   MASSISLPTPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGGRGL 60

Query: 61  CNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKG 120
           CNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKG
Sbjct: 61  CNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGGEKG 120

Query: 121 LRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYY 180
           LRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 LRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKDSQ 240
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQKDSQ 240

[Close]

BLAST of Moc10g08580 vs. ExPASy TrEMBL
Match: A0A6J1IWU0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481312 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.9e-101
Identity = 197/243 (81.07%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 1   MASSISLPTPH---LKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGG 60
           MASSISLP+P    LKSTFLG+  RRF  HR+FPLP+RAS SH  FRP+A FDL QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGG 120
           RGLCNGE+GL+EELKR+V E    IG EIPE  EK A   V EDGF+KELMGLTGGFPGG
Sbjct: 61  RGLCNGEKGLKEELKRNVVE--ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           EKGLRKFI+ENPPPPP    KP AS S EIGAI SSQKPKPPDLPLLLPGMIAIVKNPN+
Sbjct: 121 EKGLRKFITENPPPPP---PKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQK 240
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEPLLQK
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 238

[Close]

BLAST of Moc10g08580 vs. ExPASy TrEMBL
Match: A0A6J1FWM0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448039 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.9e-100
Identity = 196/243 (80.66%), Postives = 206/243 (84.77%), Query Frame = 0


Query: 1   MASSISLPTPH---LKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGG 60
           MASSISLP+P    LKSTFLG+  RRF  HR+FPLP+RA  SH   RP+A FDL QLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTSRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGG 120
           RGLCNGE+GL EELKR+V E    IG EIPE  EK A   V EDGF+KELMGLTGGFPGG
Sbjct: 61  RGLCNGEKGLNEELKRNVVE--ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           EKGLRKFISENPPPPP    KP AS S EIGAI SSQKPKPPDLPLLLPGMIAIVKNPN+
Sbjct: 121 EKGLRKFISENPPPPP---PKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNS 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQK 240
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEPLLQK
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQK 238

[Close]

BLAST of Moc10g08580 vs. ExPASy TrEMBL
Match: A0A5D3CYY1 (NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003910 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.7e-97
Identity = 192/245 (78.37%), Postives = 205/245 (83.67%), Query Frame = 0


Query: 1   MASSISLP---TPHLKSTFLGQNRRRFLPHRRFPLPQR-ASSSHRVFRPAAEFDLGQLLG 60
           MASSISLP   TP LKS+FL QNRRR L HR FPLP R ASS+H  FRP+A FDL QLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGLREELKRDVAEIPA-EIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFP 120
           GRGLCNGERG+ EELKR+V + P    G EIPE   K     V EDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNP 180
           GGEKGL+KFISENPPP      KP AS SGEIG+I++++KPKPPDLPLLLPGMIAIVKNP
Sbjct: 121 GGEKGLKKFISENPPP-----RKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNP 180

Query: 181 NNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLL 240
           NNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEP L
Sbjct: 181 NNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFL 240

[Close]

BLAST of Moc10g08580 vs. ExPASy TrEMBL
Match: A0A1S3BSR5 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493099 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.7e-97
Identity = 192/245 (78.37%), Postives = 205/245 (83.67%), Query Frame = 0


Query: 1   MASSISLP---TPHLKSTFLGQNRRRFLPHRRFPLPQR-ASSSHRVFRPAAEFDLGQLLG 60
           MASSISLP   TP LKS+FL QNRRR L HR FPLP R ASS+H  FRP+A FDL QLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGLREELKRDVAEIPA-EIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFP 120
           GRGLCNGERG+ EELKR+V + P    G EIPE   K     V EDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNP 180
           GGEKGL+KFISENPPP      KP AS SGEIG+I++++KPKPPDLPLLLPGMIAIVKNP
Sbjct: 121 GGEKGLKKFISENPPP-----RKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNP 180

Query: 181 NNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLL 240
           NNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEP L
Sbjct: 181 NNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFL 240

[Close]

BLAST of Moc10g08580 vs. TAIR 10
Match: AT4G23890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). )

HSP 1 Score: 266.2 bits (679), Expect = 2.6e-71
Identity = 139/243 (57.20%), Postives = 180/243 (74.07%), Query Frame = 0


Query: 3   SSISLP---TPHLKSTFLGQNRRRFLPHRR-FPLPQRASSSHRVFRPAAEFDLGQLLGGR 62
           SSI++P   TP  +S FLGQ  +    +R  FP P++ S  ++V +   +F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVS----EDGFEKELMGLTGGF 122
           GLCNGE+G+ +EL+R++ +       E  E   +S  + +S    EDGFEKE+MGLTGGF
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 123

Query: 123 PGGEKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKN 182
           PGGEKGL+ FI +NPPPPP P   PPA    +  A+ + +KPK P LPLL+PGMIAIVKN
Sbjct: 124 PGGEKGLKTFIEKNPPPPPPP---PPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKN 183

Query: 183 PNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPL 238
            N+PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPP KNP+S +LEPL
Sbjct: 184 QNSPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPL 242

The following BLAST results are available for this feature:

BLAST of Moc10g08580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136461.1	6.6e-133	100.00	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Momordica charantia]	[more]
XP_038902579.1	1.9e-108	84.77	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_...	[more]
XP_023553886.1	6.0e-102	81.89	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022982522.1	3.9e-101	81.07	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima]	[more]
KAG7031154.1	8.7e-101	81.07	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of Moc10g08580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0A4	3.7e-70	57.20	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Moc10g08580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3K2	3.2e-133	100.00	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Momordica charantia O...	[more]
A0A6J1IWU0	1.9e-101	81.07	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1FWM0	7.9e-100	80.66	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A5D3CYY1	1.7e-97	78.37	NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BSR5	1.7e-97	78.37	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 ...	[more]

BLAST of Moc10g08580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23890.1	2.6e-71	57.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.140		coord: 159..228 e-value: 7.3E-33 score: 113.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..240
None	No IPR available	PANTHER	PTHR35494:SF1	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 4..239
IPR021659	NADH dehydrogenase-like complex, subunit S	PFAM	PF11623	NdhS	coord: 164..215 e-value: 9.4E-29 score: 98.8
IPR021659	NADH dehydrogenase-like complex, subunit S	PANTHER	PTHR35494	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 4..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g08580.1	Moc10g08580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)