Moc10g07960 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g07960
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transcription initiation factor IIE subunit beta
Location	chr10: 5825530 .. 5829308 (-)
RNA-Seq Expression	Moc10g07960
Synteny	Moc10g07960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGCAAGATAAGCTAGACAGGTTCAAGAAACAGCAAGAACGGTGTCAGACTACCTTGACTGGCATTGCTGCATCCAAGTCTTCCTCCACACCCAAGTTTACGCCTGCACCAGCTGCTCCCAATGGAAGACCTCCGGCTCCTGCTGTAAAGTTCTCCAATGATACCGAGAGACTTCAACATATTAACAGCATTAGGAAATCTCCTGTTGGGGCTCAGATCAAGCGGGTTATTGACCTGCTGCTGGAGGTACACAACCCTCACCCATCTTGTTTCCCCTTTTCACAAGCTATGTTTTTTCCCCCTTCTTCAACTTTAGTTGTTTTCCTGGTTTCTTGTGTTTGAACGAATTCTTCAATGGAAGGCTATTGCAGGATAGGATGTAATGGACCACGATTTGATTCGAAATATGCTGAGCTTATGCTAACATTTCACATATTTCTTGTTCTTAAGCAGTCCAAGTTCTAACAATGTCAATATGTTTTCTTTTTCTTCTAAATGGATAAAATTTTCACTGGGGATTTGGTTGGCTTGAGAGAAAAAGAGGACTTCTTCAGGACTTGCGACTTGTGATCATTTGATGGAAAGAGTAGATTAGATTCTCTTCACTGTTTTTGCTCAATCGTTTTTCCTCAATGTGAAGAAATTTGTCTCTACTTGCAAATTACATTTCTTAATTCCCTCACCCCTCTCTCTCTGAGTTTTGAATTGACTGTGAAAAAGCTTAAAAAGTCTTTCTGAAATGCATTTTCTCTTCTATTGTTATTGAATTGGAACCTTGGGGGGAGGGGGTATGTTACAATCTCACAGCTTGCTTGTTCTACATGTTAACAGACAAGGCTAGCCCATACACCAGAGCAAATCAATGAAGCGTGTTATGTTGATATAAATTCCAACAAAGCTGTTTTTGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCGCATACAAGGTAATTTATATTCTCAAATACTGGTATAAATTTGCACGTTCTTGTACTTAATTGGTCTAGATGTTTAAACCTTCAATGGAGGATAACTTTTTTTTGCTTTTCTTTTTTCTGTTTTTCATGTATTCAGTCCAAGCATGATTTAAAGGATAAGAGTCAACTTCTGTACTTGATACGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAACCGTTATGGAAGACTTGCAAGTACGTATATTTGAGAAATTTTTTATGTGCGTTTTGAATGGGAAAAAGTGCAATATACTAAATAAACCTTGGATGATGCTATCCTTATTGAACTGCATCAGCAAAAACTTCCGTAGAGTTTAGTATTGGGGAAATTGTGGACATTAAGCATCTTATGTAATTTTTAGGAATATATGAATTATAGCTAATTTATAATTCTAACTACTCTGGAGATTGGTACAAGAATCTGTTGGAATCTGGTTTGGGTCCTATTAGAATTTAATTAGATTAGGACTCTTTGAAATGTAGATTTAATTCAGTCAGTTTGTTACGTTTTGATTTGACTAATTAAGGCGTTGTTTGAGAGTGTTGTGAAATAAAACTCTATGTTTTTTAGCTTGTGAGTAGTGATTTCAAGTGCACATTAGCTTTAAATAATCAACTAAAAGTTGTTCTTAGAAACAAATTTGAAAATAACAGCCAAGAGTTGTATTCCAAAATGTCTCAAAAGGTCCCTAAATTCCTTTGGGCTACTATGCCCTTGTTTTTCCTTCCCTCCACCTCTTCAGCTTGGTTTCTTCTCTTCTCTTCTCTCCATTCCACACCCTATGGTGTCAGTACCAGATGGATGGATTTTAGATCAAATTTTAGGCCCTTTTGCTTGTTTTTGTTCTCTTTCATTTTCCCTCAATGAGCTTATATATAAAAAGGAAAAGAAAAAAATCAAGCAAGTTTGTTCCTTCCTGCAGAATCTGATGGATGCTTATATGTCTCACGCTCACTCACTATTTATGTTGATGATCATGTCATAACTGATAAGTTAGTTTGTTTAGTTTTCCTTCAGGTTAGAGTGGCGTTCCCTTGTACATTCATAATGTTTTATTCACCCTACAAATAACAATTCCTATGCCAAAGTCATAAAGAATAGTGTTTTCTATGGCAGTTGAATTTTAAATTGAAGGATTTAGCCTGCCCCATGATTTATAATCTTTGTCCAGATTGTAGCTTCTACATTTTAGTCGAGAATTAGCAAAAACCTACAAAGATTAGTTTGATTGTGGTATAAACCTATATAGTGAAAGCTTGAAAAAAGAAGTGTAGGGTCCATACATCCATGTTATCTACAAGTTCAGCTCCTCCATCGCATGATCTTGGAAACCATGATTAGACTATTGAGGCCAATAGAAGATGAAGGACTTGAAGATAACATGTTATTTAGCACAAAGACTTAGATGGGAATTAAGAGATTCATAATGACTCCCGGCCGAGCATCATTAGATCACAGGAGTCTTCAGGTCCATGAATTATTCAATTTGTCATCTGAAAAAAGGTTTTGGAAATCAACAGTACTAGCATTCTTCCTGATGTAAAGGAAAAGAAAAGAACTTTCTTTATAAATTGAAAGTCAAACACAACAACCTCAGGTTCCGAAACTACTTGTTCTTGAGTGCTTTGAAGCTTGAGGATGAGTTTTATTCAACCAGGGAAGAACAGTACCAGGGTAATGTTGGAAATTACAGTTTTACATAAGGTTTTTTTTTTTTGGTCCTTTGACTTTTATTTTAAATATTAAGAGTCATAGATAGTCTATCTGATTAGCAAATTACTATGGGAGCTTTTTCACCTTCTAATCTCATGGGACAATCGTCTGGTCCTACTACATTAGGTGTCGGAAAACACATAAGAATTATTAATTCCTAAGATAGATGGCTATCATGGGTTTGAACCCATTCCCTCTCAATTAACCCTAACCCCTTTGGACCAATGAACCATCCATGATGAGTTTACTATGGGAGCTTTATAGTTCTTTTTATAATAACGTCGGGTCATATTAATATGTTGAAATTTAGAATTTTATAGGTTAGGAGTTTTGCTTATAACTATTGTTTTCAGGTTACGAATCTAATTTAGGTTATGAGGAGTGCCTCGTGAAAGTTTACAATTAGGATTTTATAGTAGTTATAATACTCAGCCGAGTAGGAGGAATGGCTTGGAGGTTGTTTTCTTCTGAAGTTATGTTTATTTGTTTCCATGCTTGTTGATCATATATATATATATTTTTTTTTGCCTCCTAACCCATATGAAGTTTTGTTTAGACGTAACCTGGCATTATATCAGTACAACTTCTTCGATACATGAATGGAAAGCACTGTATGAAACCAATTACGAGCTTGTTTTCTTCCAGATGATATATGAGGTGTTAGTGACAGTCCATGAGATTTAATTTTGAGCTTACAGAATCTTTTGCCCTCTTGTTTAGGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAACGATCCTAGAATTCAAATCAAGGTAGATGACGATCTGAAGATACTTTTTCGGGAGATTGAGTTACCTCGTGACATGCTCGATGTTGAGAAGGATCTTCAAAAGAATGGGATGAAGCCTGCAACCAACACGGCCAAGAGGCGAGCCAACGCACAACATGTGGCATCCTCAAAGCCGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAATTAG

mRNA sequence

ATGGCGTTGCAAGATAAGCTAGACAGGTTCAAGAAACAGCAAGAACGGTGTCAGACTACCTTGACTGGCATTGCTGCATCCAAGTCTTCCTCCACACCCAAGTTTACGCCTGCACCAGCTGCTCCCAATGGAAGACCTCCGGCTCCTGCTGTAAAGTTCTCCAATGATACCGAGAGACTTCAACATATTAACAGCATTAGGAAATCTCCTGTTGGGGCTCAGATCAAGCGGGTTATTGACCTGCTGCTGGAGACAAGGCTAGCCCATACACCAGAGCAAATCAATGAAGCGTGTTATGTTGATATAAATTCCAACAAAGCTGTTTTTGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCGCATACAAGTCCAAGCATGATTTAAAGGATAAGAGTCAACTTCTGTACTTGATACGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAACCGTTATGGAAGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAACGATCCTAGAATTCAAATCAAGGTAGATGACGATCTGAAGATACTTTTTCGGGAGATTGAGTTACCTCGTGACATGCTCGATGTTGAGAAGGATCTTCAAAAGAATGGGATGAAGCCTGCAACCAACACGGCCAAGAGGCGAGCCAACGCACAACATGTGGCATCCTCAAAGCCGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAATTAG

Coding sequence (CDS)

ATGGCGTTGCAAGATAAGCTAGACAGGTTCAAGAAACAGCAAGAACGGTGTCAGACTACCTTGACTGGCATTGCTGCATCCAAGTCTTCCTCCACACCCAAGTTTACGCCTGCACCAGCTGCTCCCAATGGAAGACCTCCGGCTCCTGCTGTAAAGTTCTCCAATGATACCGAGAGACTTCAACATATTAACAGCATTAGGAAATCTCCTGTTGGGGCTCAGATCAAGCGGGTTATTGACCTGCTGCTGGAGACAAGGCTAGCCCATACACCAGAGCAAATCAATGAAGCGTGTTATGTTGATATAAATTCCAACAAAGCTGTTTTTGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCGCATACAAGTCCAAGCATGATTTAAAGGATAAGAGTCAACTTCTGTACTTGATACGGAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATTCTTATCCAACCGTTATGGAAGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTTGATTCACAAGAAGATATTGCATACCCAAACGATCCTAGAATTCAAATCAAGGTAGATGACGATCTGAAGATACTTTTTCGGGAGATTGAGTTACCTCGTGACATGCTCGATGTTGAGAAGGATCTTCAAAAGAATGGGATGAAGCCTGCAACCAACACGGCCAAGAGGCGAGCCAACGCACAACATGTGGCATCCTCAAAGCCGAAGCCCAAGAAAAAGAAGCAAGAGATCAGCAAGAGGACTAAGCTCACCAATGCACATCTTCCCGAGCTCTTCAAAAATTAG

Protein sequence

MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Homology

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BLAST of Moc10g07960 vs. NCBI nr
Match: XP_022136771.1 (general transcription factor IIE subunit 2-like [Momordica charantia])

HSP 1 Score: 536.6 bits (1381), Expect = 1.3e-148
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERL 60
           MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERL
Sbjct: 1   MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERL 60

Query: 61  QHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHY 120
           QHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHY
Sbjct: 61  QHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHY 120

Query: 121 DGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLSN 180
           DGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLSN
Sbjct: 121 DGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLSN 180

Query: 181 FDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240
           FDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN
Sbjct: 181 FDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240

Query: 241 AQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           AQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 AQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275

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BLAST of Moc10g07960 vs. NCBI nr
Match: XP_011653191.1 (general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothetical protein Csa_014626 [Cucumis sativus])

HSP 1 Score: 500.0 bits (1286), Expect = 1.3e-137
Identity = 258/277 (93.14%), Postives = 268/277 (96.75%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTE 60
           MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RPPAPAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLL 180
           HYDGRRF+YKSKHDLKDK+QLLYL+RKFPEGIAVIDLKD+YP+VMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

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BLAST of Moc10g07960 vs. NCBI nr
Match: XP_008452012.1 (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_008452013.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >KAA0044840.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa] >TYK16624.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 496.5 bits (1277), Expect = 1.5e-136
Identity = 258/277 (93.14%), Postives = 267/277 (96.39%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTE 60
           MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RP APAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLL 180
           HYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YP+VMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

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BLAST of Moc10g07960 vs. NCBI nr
Match: XP_022984812.1 (general transcription factor IIE subunit 2-like [Cucurbita maxima])

HSP 1 Score: 495.7 bits (1275), Expect = 2.5e-136
Identity = 257/276 (93.12%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASK-SSSTPKFTPAPAAPNGRPPAPAVKFSNDTER 60
           MALQ+KLDRFK+QQERCQTTL+GIAASK +++TP+FTPAPAA   RPPAPA+KFSNDTER
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAA--SRPPAPAIKFSNDTER 60

Query: 61  LQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVH 120
           LQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACYVDINSNKAVFDSLRNNPKVH
Sbjct: 61  LQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVH 120

Query: 121 YDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLS 180
           YDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDSYP+VMEDLQALKASGQVWLLS
Sbjct: 121 YDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLS 180

Query: 181 NFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240
           NFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA
Sbjct: 181 NFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240

Query: 241 NAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           NAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 NAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of Moc10g07960 vs. NCBI nr
Match: XP_038906431.1 (general transcription factor IIE subunit 2-like [Benincasa hispida])

HSP 1 Score: 495.4 bits (1274), Expect = 3.3e-136
Identity = 259/277 (93.50%), Postives = 268/277 (96.75%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASKSS--STPKFTPAPAAPNGRPPAPAVKFSNDTE 60
           MALQ++LDRFKKQQERCQTTL+GIAA+KS+  STPKFTPAPAA   RPPAPAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQTTLSGIAAAKSASKSTPKFTPAPAA--SRPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACYVDINSNKAVFDSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKV 120

Query: 121 HYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLL 180
           HYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YP+VMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           ANAQHVASSKPK KKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKLKKKKQEISKRTKLTNAHLPELFKN 275

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BLAST of Moc10g07960 vs. ExPASy Swiss-Prot
Match: P79011 (Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfa2 PE=1 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 9.0e-12
Identity = 60/205 (29.27%), Postives = 106/205 (51.71%), Query Frame = 0


Query: 73  AQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHYDGRR--FAYKSK 132
           +Q+   ++ L E     T E+I  A Y+       + + L+ N +++YD R   F +K  
Sbjct: 81  SQLHYAVEYLKERNEPKTAEEI--ASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPL 140

Query: 133 HDLKDKSQLLYLI--RKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLL-SNFDSQEDI 192
           H+++  + LL  +  +K   G+++ +L+D +P V  +L+ L+  G+V LL +  D    +
Sbjct: 141 HNIRSGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 200

Query: 193 AYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHV 252
            + ND      VD + + ++ EI +P   LD+  +L K G+KP +   +T KR  + Q  
Sbjct: 201 VWRNDKSCDCHVDKEFQQVWHEIPIP-PTLDLASELGKYGLKPTSVDPSTVKRAGHNQ-- 260

Query: 253 ASSKPKPKKKKQEISKRTKLTNAHL 270
               PK KK K   ++R K+TN HL
Sbjct: 261 ---TPKQKKPK---TRRGKITNTHL 274

[Close]

BLAST of Moc10g07960 vs. ExPASy Swiss-Prot
Match: Q2KJF9 (General transcription factor IIE subunit 2 OS=Bos taurus OX=9913 GN=GTF2E2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-07
Identity = 52/189 (27.51%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 92  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE 151
           E ++E  ++DI   +    + ++L NNPK+     ++A+K K++LKDK  LL L+ +  +
Sbjct: 99  EILDETQHLDIGLKQKQWLMSEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLDQHDQ 158

Query: 152 -GIAVIDLKDSYPTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKILF 211
            G+  I L+D    +    +A+KA G   L  N   ++ I + ND   Q  VD++ + L+
Sbjct: 159 RGLGGILLEDIEEGLPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLW 218

Query: 212 REIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTN 271
           R + +   D   +E+ L++ G+    ++  ++  A      KP  +KK     +R K  N
Sbjct: 219 RSVTVDSMDEEKIEEYLKRQGISSMQDSGPKKV-APIQRRKKPASQKK-----RRFKTHN 278

Query: 272 AHLPELFKN 276
            HL  + K+
Sbjct: 279 EHLAGVLKD 281

[Close]

BLAST of Moc10g07960 vs. ExPASy Swiss-Prot
Match: P29084 (Transcription initiation factor IIE subunit beta OS=Homo sapiens OX=9606 GN=GTF2E2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-07
Identity = 50/189 (26.46%), Postives = 95/189 (50.26%), Query Frame = 0


Query: 92  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE 151
           E ++E  ++DI   +    + ++L NNPK+     ++A+K K++++DK  LL L+ +  +
Sbjct: 101 EILDETQHLDIGLKQKQWLMTEALVNNPKIEVIDGKYAFKPKYNVRDKKALLRLLDQHDQ 160

Query: 152 -GIAVIDLKDSYPTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKILF 211
            G+  I L+D    +    +A+KA G   L  N   ++ I + ND   Q  VD++ + L+
Sbjct: 161 RGLGGILLEDIEEALPNSQKAVKALGDQILFVNRPDKKKILFFNDKSCQFSVDEEFQKLW 220

Query: 212 REIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTN 271
           R + +   D   +E+ L++ G+     +  ++  A      KP  +KK     +R K  N
Sbjct: 221 RSVTVDSMDEEKIEEYLKRQGISSMQESGPKKV-APIQRRKKPASQKK-----RRFKTHN 280

Query: 272 AHLPELFKN 276
            HL  + K+
Sbjct: 281 EHLAGVLKD 283

[Close]

BLAST of Moc10g07960 vs. ExPASy Swiss-Prot
Match: Q9D902 (General transcription factor IIE subunit 2 OS=Mus musculus OX=10090 GN=Gtf2e2 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-07
Identity = 51/189 (26.98%), Postives = 98/189 (51.85%), Query Frame = 0


Query: 92  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE 151
           E ++E  ++DI   +    + ++L NNPK+     ++A+K K++LKDK  LL L+    +
Sbjct: 102 EILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLDNHDQ 161

Query: 152 -GIAVIDLKDSYPTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKILF 211
            G+  I L+D    +    +A+KA G   L  +   ++ I + ND   Q  VD++ + L+
Sbjct: 162 RGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKKILFFNDKSCQFSVDEEFQKLW 221

Query: 212 REIEL-PRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTN 271
           R + +   D   +E+ L++ G+     ++ + +  + VAS + + K   Q+  +R K  N
Sbjct: 222 RSVTVDSMDEEKIEEYLKRQGI-----SSMQESGPKKVASIQRRKKPASQK-KRRFKTHN 281

Query: 272 AHLPELFKN 276
            HL  + K+
Sbjct: 282 EHLAGVLKD 284

[Close]

BLAST of Moc10g07960 vs. ExPASy Swiss-Prot
Match: P29540 (General transcription factor IIE subunit 2 OS=Xenopus laevis OX=8355 GN=gtf2e2 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.7e-07
Identity = 52/195 (26.67%), Postives = 96/195 (49.23%), Query Frame = 0


Query: 92  EQINEACYVDINSNK---AVFDSLRNNPKVHYDGRRFAYKSKHDLKDKSQLLYLIRKFPE 151
           E ++E  ++DI   +    + ++L NNPK+     ++A+K K++LKDK  LL L+ K  +
Sbjct: 98  EILDETQHLDIGIKQKQWLMSEALVNNPKIEIIDGKYAFKPKYNLKDKKALLRLLDKHDQ 157

Query: 152 ----GIAVIDLKDSYPTVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLK 211
               GI + D+++  P      +A+KA G   +      ++ I + ND   Q  VD++ +
Sbjct: 158 RGLGGILLEDIEEGLPNAQ---KAIKALGDQIVFVTRPDKKKILFYNDKSCQFTVDEEFQ 217

Query: 212 ILFREIELPRDMLD---VEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKR 271
            L+R +  P D +D   +E+ L++ G+     +  ++          P  K+KK    +R
Sbjct: 218 KLWRSV--PVDSMDDEKIEEYLKRQGISSMQESGPKKI--------IPVQKRKKATSQRR 277

Query: 272 T-KLTNAHLPELFKN 276
             K  N HL  + K+
Sbjct: 278 RFKTHNDHLAGVLKD 279

[Close]

BLAST of Moc10g07960 vs. ExPASy TrEMBL
Match: A0A6J1C4F9 (Transcription initiation factor IIE subunit beta OS=Momordica charantia OX=3673 GN=LOC111008395 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 6.2e-149
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERL 60
           MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERL
Sbjct: 1   MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERL 60

Query: 61  QHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHY 120
           QHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHY
Sbjct: 61  QHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHY 120

Query: 121 DGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLSN 180
           DGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLSN
Sbjct: 121 DGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLSN 180

Query: 181 FDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240
           FDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN
Sbjct: 181 FDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRAN 240

Query: 241 AQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           AQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 AQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 275

[Close]

BLAST of Moc10g07960 vs. ExPASy TrEMBL
Match: A0A0A0KWU5 (Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G049080 PE=3 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 6.4e-138
Identity = 258/277 (93.14%), Postives = 268/277 (96.75%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTE 60
           MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RPPAPAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLL 180
           HYDGRRF+YKSKHDLKDK+QLLYL+RKFPEGIAVIDLKD+YP+VMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Moc10g07960 vs. ExPASy TrEMBL
Match: A0A1S3BS95 (Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC103493148 PE=3 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 7.1e-137
Identity = 258/277 (93.14%), Postives = 267/277 (96.39%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTE 60
           MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RP APAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLL 180
           HYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YP+VMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Moc10g07960 vs. ExPASy TrEMBL
Match: A0A5A7TNR4 (Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004520 PE=3 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 7.1e-137
Identity = 258/277 (93.14%), Postives = 267/277 (96.39%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASK--SSSTPKFTPAPAAPNGRPPAPAVKFSNDTE 60
           MALQ++LDRFKKQQERCQ+TL+GIAASK  S STPKFTPAPAA   RP APAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLL 180
           HYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKD+YP+VMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of Moc10g07960 vs. ExPASy TrEMBL
Match: A0A6J1J372 (Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482983 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136
Identity = 257/276 (93.12%), Postives = 269/276 (97.46%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASK-SSSTPKFTPAPAAPNGRPPAPAVKFSNDTER 60
           MALQ+KLDRFK+QQERCQTTL+GIAASK +++TP+FTPAPAA   RPPAPA+KFSNDTER
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTTTTPRFTPAPAA--SRPPAPAIKFSNDTER 60

Query: 61  LQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVH 120
           LQHINSIRKSPVGAQIKRVIDLLLETR A TPEQINEACYVDINSNKAVFDSLRNNPKVH
Sbjct: 61  LQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVH 120

Query: 121 YDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWLLS 180
           YDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDSYP+VMEDLQALKASGQVWLLS
Sbjct: 121 YDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLLS 180

Query: 181 NFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240
           NFDSQEDIAYPNDPRIQIKVDDDLK LFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA
Sbjct: 181 NFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240

Query: 241 NAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 276
           NAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 NAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of Moc10g07960 vs. TAIR 10
Match: AT4G20330.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 353.2 bits (905), Expect = 1.9e-97
Identity = 192/280 (68.57%), Postives = 235/280 (83.93%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAAS--KSSSTPKFTPAPAA-PNGRPPAPAVKFSNDT 60
           MAL+++LD+F KQQ +CQ+TL+ IA+S  ++SS+ +  P PAA    +P A  VKFS+DT
Sbjct: 1   MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60

Query: 61  ERLQHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPK 120
           ERLQ+IN+IRK+PVGAQIKRVIDLL E RLA TPEQINE C+VD+++NKAVFDSLR NPK
Sbjct: 61  ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120

Query: 121 VHYDGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQVWL 180
            HYDGRRF+YK+ HD+ DK+QLL L+RK+ +GIAV+DLKD+YP VMEDL+AL ASG ++L
Sbjct: 121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

Query: 181 LSNFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKR 240
           LSN  SQEDIAYPND + +IKVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+R
Sbjct: 181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAER 240

Query: 241 RANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN 276
           RA AQ H  S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Sbjct: 241 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQN 278

[Close]

BLAST of Moc10g07960 vs. TAIR 10
Match: AT4G21010.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 295.0 bits (754), Expect = 6.0e-80
Identity = 163/278 (58.63%), Postives = 218/278 (78.42%), Query Frame = 0


Query: 1   MALQDKLDRFKKQQERCQTTLTGIAASKSSSTPKFTPAPAAPNGRPPAPAVKFSNDTERL 60
           MAL+++LD+F KQQE+CQ+TL+ I++S+++ +  + PA A  + +P     KFS +T++L
Sbjct: 1   MALREQLDKFNKQQEKCQSTLSSISSSRTALSRSYVPA-ATTSQKPNVFRGKFSENTKQL 60

Query: 61  QHINSIRKSPVGAQIKRVIDLLLETRLAHTPEQINEACYVDINSNKAVFDSLRNNPKVHY 120
           QHI +IR S VGAQ+K VIDLL +TRLA+T EQINEACYVD+++NKAVFDSLR NPKVHY
Sbjct: 61  QHITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPKVHY 120

Query: 121 DGRRFAYKSKHDLKDKSQLLYLIRKFPEGIAVIDLKDSYPTVMEDLQALKASGQV-WLLS 180
           DGRRF+YK+ H++KDK QLL  + K  + I V DLKD+YP VMEDL++LK+SG++ WLLS
Sbjct: 121 DGRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFWLLS 180

Query: 181 NFDSQEDIAYPNDPRIQIKVDDDLKILFREIELPRDMLDVEKDLQKNGMKPATNTAKRRA 240
           N DS+E   Y N+     K+DD+LK LFR+I +P DML+VEK+L K G+KPATN A+RRA
Sbjct: 181 NTDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAERRA 240

Query: 241 NAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN 276
             Q H  S+KPK  KKKK+EI+ RTKLTN+H+ ELF++
Sbjct: 241 AEQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQS 275

The following BLAST results are available for this feature:

BLAST of Moc10g07960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136771.1	1.3e-148	100.00	general transcription factor IIE subunit 2-like [Momordica charantia]	[more]
XP_011653191.1	1.3e-137	93.14	general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothe...	[more]
XP_008452012.1	1.5e-136	93.14	PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_00...	[more]
XP_022984812.1	2.5e-136	93.12	general transcription factor IIE subunit 2-like [Cucurbita maxima]	[more]
XP_038906431.1	3.3e-136	93.50	general transcription factor IIE subunit 2-like [Benincasa hispida]	[more]

BLAST of Moc10g07960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P79011	9.0e-12	29.27	Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (s...	[more]
Q2KJF9	1.0e-07	27.51	General transcription factor IIE subunit 2 OS=Bos taurus OX=9913 GN=GTF2E2 PE=2 ...	[more]
P29084	3.9e-07	26.46	Transcription initiation factor IIE subunit beta OS=Homo sapiens OX=9606 GN=GTF2...	[more]
Q9D902	5.1e-07	26.98	General transcription factor IIE subunit 2 OS=Mus musculus OX=10090 GN=Gtf2e2 PE...	[more]
P29540	6.7e-07	26.67	General transcription factor IIE subunit 2 OS=Xenopus laevis OX=8355 GN=gtf2e2 P...	[more]

BLAST of Moc10g07960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4F9	6.2e-149	100.00	Transcription initiation factor IIE subunit beta OS=Momordica charantia OX=3673 ...	[more]
A0A0A0KWU5	6.4e-138	93.14	Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A1S3BS95	7.1e-137	93.14	Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TNR4	7.1e-137	93.14	Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1J372	1.2e-136	93.12	Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Moc10g07960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20330.1	1.9e-97	68.57	Transcription initiation factor TFIIE, beta subunit	[more]
AT4G21010.1	6.0e-80	58.63	Transcription initiation factor TFIIE, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PFAM	PF02186	TFIIE_beta	coord: 73..132 e-value: 1.0E-8 score: 35.3
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PROSITE	PS51351	TFIIE_BETA_C	coord: 59..134 score: 10.502979
IPR040501	TFA2, Winged helix domain 2	PFAM	PF18121	TFA2_Winged_2	coord: 134..191 e-value: 2.4E-14 score: 52.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..275
None	No IPR available	PANTHER	PTHR12716:SF13	BNAA02G21830D PROTEIN	coord: 1..275
IPR016656	Transcription initiation factor TFIIE, beta subunit	PANTHER	PTHR12716	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	coord: 1..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g07960.1	Moc10g07960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005673	transcription factor TFIIE complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003743	translation initiation factor activity