Moc10g06490 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g06490
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptiontranscription factor MYB41-like
Locationchr10: 4676127 .. 4677005 (-)
RNA-Seq ExpressionMoc10g06490
SyntenyMoc10g06490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTTGATCCCATCACTCACATGCCCACCACTACTCACAATAATCATCTTCTTCCTCTCCCACATCTCCAAAGCCTTCTGCTTTTCCACCACCAAACTCCATTGGAACACCAGCTACAAGCTCTTCAAATGCCTCCCTTGCACGGTAAATTTTCTCTCTTTTCATTTCATACCAAACTTTATCATCGCATTATATTACACTCAGTGTGTTAACAAAATTTTTTGACAATAATCGAGGCTAGGTCCCAATAGAACATATCTCAAATGGTTATGTCAACTTATAACTCAAATGATTAAGGTACAAAGTAAGTTCATGCGAAGTTAGAGGTATTCCCAACCCGCTCATCATTGATTACTTGATGTAATAAAAAAGGGTAAAGAAAAGAAAAAAAGGTCAAAATTTCAACAAATCTCTAAATATAAGTTTATTACACGCCAATTTTAACTTCCACTAATACAAAGGTATACTTGAAAAACATATTTTCAAATTGGGACTATAATATATTAGCCATTATCCTAGCTAATAAACTAGGTGGCATCATAAAATTCGTTATAACTATTGCCAATTAGACAAATATTTTGTTCTTTTTAATATTAATAGTAACATTATAAGATTAAATCTATTTTTTTTTCTTAATAGAATATTTACAGCATCTTCTCGAACCTCCATCTTCTCTCTTTACACCCACTTTCCAACCGCTCCAATATGATGGGAACATGTCATTCCCTTTTGCCCCTTTGCCGGACTTGGAGTTCTGTGAAGCTTCCAGCGATCCAACGCCGGCGGCAGTTTACGGCGGCCAAACCACAGCTAATTCTCTGCGTGGGTTTCTTCAAACGCTCCCGCCGCCGCCTAGCTCCGATGGAAACTTATAA

mRNA sequence

ATGGGATTTGATCCCATCACTCACATGCCCACCACTACTCACAATAATCATCTTCTTCCTCTCCCACATCTCCAAAGCCTTCTGCTTTTCCACCACCAAACTCCATTGGAACACCAGCTACAAGCTCTTCAAATGCCTCCCTTGCACGAATATTTACAGCATCTTCTCGAACCTCCATCTTCTCTCTTTACACCCACTTTCCAACCGCTCCAATATGATGGGAACATGTCATTCCCTTTTGCCCCTTTGCCGGACTTGGAGTTCTGTGAAGCTTCCAGCGATCCAACGCCGGCGGCAGTTTACGGCGGCCAAACCACAGCTAATTCTCTGCGTGGGTTTCTTCAAACGCTCCCGCCGCCGCCTAGCTCCGATGGAAACTTATAA

Coding sequence (CDS)

ATGGGATTTGATCCCATCACTCACATGCCCACCACTACTCACAATAATCATCTTCTTCCTCTCCCACATCTCCAAAGCCTTCTGCTTTTCCACCACCAAACTCCATTGGAACACCAGCTACAAGCTCTTCAAATGCCTCCCTTGCACGAATATTTACAGCATCTTCTCGAACCTCCATCTTCTCTCTTTACACCCACTTTCCAACCGCTCCAATATGATGGGAACATGTCATTCCCTTTTGCCCCTTTGCCGGACTTGGAGTTCTGTGAAGCTTCCAGCGATCCAACGCCGGCGGCAGTTTACGGCGGCCAAACCACAGCTAATTCTCTGCGTGGGTTTCTTCAAACGCTCCCGCCGCCGCCTAGCTCCGATGGAAACTTATAA

Protein sequence

MGFDPITHMPTTTHNNHLLPLPHLQSLLLFHHQTPLEHQLQALQMPPLHEYLQHLLEPPSSLFTPTFQPLQYDGNMSFPFAPLPDLEFCEASSDPTPAAVYGGQTTANSLRGFLQTLPPPPSSDGNL
Homology
BLAST of Moc10g06490 vs. NCBI nr
Match: XP_038882316.1 (transcription factor MYB53-like [Benincasa hispida])

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-20
Identity = 76/144 (52.78%), Postives = 89/144 (61.81%), Query Frame = 0

Query: 1   MGFDPITHMPTTTHN---NHLLPLPHLQSLLLFHHQTP-LEHQLQALQMPPLHEYLQHLL 60
           MGFDP+T MPT   N   +HL PL +LQ+LL  H   P LEHQL+ALQM  L EYL H+L
Sbjct: 120 MGFDPMTPMPTIYKNTLYSHLHPLLNLQNLL--HFDLPLLEHQLEALQMATLQEYLHHVL 179

Query: 61  EPPSSLFTPTFQPLQYDGNMSFPFAPLPDLEFCEASSDPTP---------AAVYGGQTTA 120
           + P S FTPTF+PLQ++ NMSFPFA LPDLE    S DPT          AAV GGQ+ A
Sbjct: 180 QLPISPFTPTFRPLQHNRNMSFPFAHLPDLEVYGVSDDPTSTVVHRRPDMAAVSGGQSGA 239

Query: 121 -----NSLRGFLQTLPP--PPSSD 125
                +S    L  LPP   PS+D
Sbjct: 240 SMWASSSSSNALPPLPPVEAPSAD 261

BLAST of Moc10g06490 vs. NCBI nr
Match: KAG6577294.1 (Transcription factor MYB93, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 7.0e-17
Identity = 64/124 (51.61%), Postives = 75/124 (60.48%), Query Frame = 0

Query: 1   MGFDPITHMPTTTHNN---HLLPLPHLQSLLLFHHQTPLEHQLQALQMPPLHEYLQHLLE 60
           MG DP+THMP    N    H LP P+L++ LLFH  T L+ QL+ALQM  L EYL HL +
Sbjct: 121 MGLDPVTHMPAIYDNTLSAHHLPPPNLENFLLFHLPT-LKQQLEALQMATLQEYL-HLPQ 180

Query: 61  PPSSLFTPTFQPLQYDGNMSFPFAPLPDLEFCEASSDPTPAAVYGGQTTANSLRGFLQTL 120
            P   FTPTF  LQYD NM  P+A LPDLE   AS DPT  AV GGQ+ A+       + 
Sbjct: 181 LPPPPFTPTFH-LQYDRNMPGPYANLPDLEVFGASDDPTWTAVSGGQSGASMWASSSSSN 240

Query: 121 PPPP 122
            P P
Sbjct: 241 APSP 241

BLAST of Moc10g06490 vs. NCBI nr
Match: XP_022984302.1 (myb-related protein 308-like [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 63/111 (56.76%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 1   MGFDPITHMPTTTHNN---HLLPLPHLQSLLLFHHQTPLEHQLQALQMPPLHEYLQHLLE 60
           MGFDP+THMP    N    H LP P+L++ LLF   T L+ QL+ALQM  L EYLQ L +
Sbjct: 120 MGFDPVTHMPAIYDNTLSAHHLPPPNLENFLLFDLPT-LKQQLEALQMTTLQEYLQ-LPQ 179

Query: 61  PPSSLFTPTFQPLQYDGNMSFPFAPLPDLEFCEASSDPTPAAVYGGQTTAN 109
            P   FTPTF  LQYD NMS P+A LPDLE   AS DPT  AV GGQ+ A+
Sbjct: 180 LPPPPFTPTFH-LQYDRNMSGPYANLPDLEIFGASDDPTWTAVSGGQSGAS 227

BLAST of Moc10g06490 vs. NCBI nr
Match: XP_023553162.1 (myb-related protein 308-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 64/111 (57.66%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 1   MGFDPITHMPTTTHNN---HLLPLPHLQSLLLFHHQTPLEHQLQALQMPPLHEYLQHLLE 60
           MGFDP+THMPT   N    H LP P+L++ LLF   T L+ QLQALQM  L EYLQ L +
Sbjct: 120 MGFDPVTHMPTIYDNTLSAHHLPPPNLENFLLFDLPT-LKQQLQALQMATLQEYLQ-LPQ 179

Query: 61  PPSSLFTPTFQPLQYDGNMSFPFAPLPDLEFCEASSDPTPAAVYGGQTTAN 109
            P   FTPTF  LQYD NMS P+A LPDLE   AS DPT  AV G Q+ A+
Sbjct: 180 LPPPPFTPTFH-LQYDRNMSGPYANLPDLEVFGASDDPTWTAVSGDQSGAS 227

BLAST of Moc10g06490 vs. NCBI nr
Match: XP_022929267.1 (transcription factor MYB41-like [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 5.9e-16
Identity = 62/111 (55.86%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 1   MGFDPITHMPTTTHNN---HLLPLPHLQSLLLFHHQTPLEHQLQALQMPPLHEYLQHLLE 60
           MG DP+THMP    N    H LP P+L++ LLFH  T L+ QL+ALQM  L EYLQ L +
Sbjct: 122 MGLDPVTHMPAIYDNTLSAHHLPPPNLENFLLFHLPT-LKQQLEALQMATLQEYLQ-LPQ 181

Query: 61  PPSSLFTPTFQPLQYDGNMSFPFAPLPDLEFCEASSDPTPAAVYGGQTTAN 109
            P   FTPTF  LQYD NMS P+A LPDLE   AS DPT  AV G Q  A+
Sbjct: 182 LPPPPFTPTFH-LQYDRNMSGPYANLPDLEVFGASDDPTWTAVSGDQNGAS 229

BLAST of Moc10g06490 vs. ExPASy TrEMBL
Match: A0A6J1J1U8 (myb-related protein 308-like OS=Cucurbita maxima OX=3661 GN=LOC111482643 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 63/111 (56.76%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 1   MGFDPITHMPTTTHNN---HLLPLPHLQSLLLFHHQTPLEHQLQALQMPPLHEYLQHLLE 60
           MGFDP+THMP    N    H LP P+L++ LLF   T L+ QL+ALQM  L EYLQ L +
Sbjct: 120 MGFDPVTHMPAIYDNTLSAHHLPPPNLENFLLFDLPT-LKQQLEALQMTTLQEYLQ-LPQ 179

Query: 61  PPSSLFTPTFQPLQYDGNMSFPFAPLPDLEFCEASSDPTPAAVYGGQTTAN 109
            P   FTPTF  LQYD NMS P+A LPDLE   AS DPT  AV GGQ+ A+
Sbjct: 180 LPPPPFTPTFH-LQYDRNMSGPYANLPDLEIFGASDDPTWTAVSGGQSGAS 227

BLAST of Moc10g06490 vs. ExPASy TrEMBL
Match: A0A6J1EMB7 (transcription factor MYB41-like OS=Cucurbita moschata OX=3662 GN=LOC111435897 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 62/111 (55.86%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 1   MGFDPITHMPTTTHNN---HLLPLPHLQSLLLFHHQTPLEHQLQALQMPPLHEYLQHLLE 60
           MG DP+THMP    N    H LP P+L++ LLFH  T L+ QL+ALQM  L EYLQ L +
Sbjct: 122 MGLDPVTHMPAIYDNTLSAHHLPPPNLENFLLFHLPT-LKQQLEALQMATLQEYLQ-LPQ 181

Query: 61  PPSSLFTPTFQPLQYDGNMSFPFAPLPDLEFCEASSDPTPAAVYGGQTTAN 109
            P   FTPTF  LQYD NMS P+A LPDLE   AS DPT  AV G Q  A+
Sbjct: 182 LPPPPFTPTFH-LQYDRNMSGPYANLPDLEVFGASDDPTWTAVSGDQNGAS 229

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882316.12.3e-2052.78transcription factor MYB53-like [Benincasa hispida][more]
KAG6577294.17.0e-1751.61Transcription factor MYB93, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022984302.11.2e-1656.76myb-related protein 308-like [Cucurbita maxima][more]
XP_023553162.11.2e-1657.66myb-related protein 308-like [Cucurbita pepo subsp. pepo][more]
XP_022929267.15.9e-1655.86transcription factor MYB41-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J1U85.8e-1756.76myb-related protein 308-like OS=Cucurbita maxima OX=3661 GN=LOC111482643 PE=4 SV... [more]
A0A6J1EMB72.9e-1655.86transcription factor MYB41-like OS=Cucurbita moschata OX=3662 GN=LOC111435897 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g06490.1Moc10g06490.1mRNA