Moc10g06470 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g06470
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTetratricopeptide-like helical
Locationchr10: 4668964 .. 4669290 (+)
RNA-Seq ExpressionMoc10g06470
SyntenyMoc10g06470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCGAGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTTAGAGCTATTTTAGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGTGAACAGATCCAAGTCTTCTAACAATAAGTGA

mRNA sequence

ATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCGAGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTTAGAGCTATTTTAGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGTGAACAGATCCAAGTCTTCTAACAATAAGTGA

Coding sequence (CDS)

ATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCGAGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTTAGAGCTATTTTAGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGTGAACAGATCCAAGTCTTCTAACAATAAGTGA

Protein sequence

MSGLWMLRNGKDMKWRTMFRLIYWRDEDEEEVNVTSTTTDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITVNRSKSSNNK
Homology
BLAST of Moc10g06470 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 26  DEDEEEVNVTSTTTD-----VGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDGLN 85
           DED+++ NVTST ++      GFF    R DGG    HCFWGILC++S+S+EK+A +G++
Sbjct: 41  DEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS 100

Query: 86  SERIMVRAILGFLMVMTIKIITVNRS 103
           S RI+VR ILGFL+V  +KII+ + S
Sbjct: 101 SVRIIVRTILGFLLVKILKIISAHTS 126

BLAST of Moc10g06470 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-13
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 26  DEDEEEVNVTSTTTD-----VGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDGLN 85
           DED+++ NVTST ++      GFF    R DGG    HCFWGILC++S+S+EK+A +G++
Sbjct: 41  DEDDDDDNVTSTVSNYSFPVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMS 100

Query: 86  SERIMVRAILGFLMVMTIKIITVNRS 103
           S RI+VR ILGFL+V  +KII+ + S
Sbjct: 101 SVRIIVRTILGFLLVKILKIISAHTS 126

BLAST of Moc10g06470 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 26  DEDEEEVNVTSTTTDV-----GFFG----KNGRGDGGHCFWGILCNMSRSIEKKAYDGLN 85
           ++DE+   VTST ++      G FG    ++ + DG     GI  ++S+ IEK+A +G+N
Sbjct: 42  EDDEDGEYVTSTISNYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMN 101

Query: 86  SERIMVRAILGFLMVMTIKIITVNRSK 104
           S RI+VR ILGFLMVMT+KII+  RSK
Sbjct: 102 SVRIIVRTILGFLMVMTMKIISAQRSK 128

BLAST of Moc10g06470 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 26  DEDEEEVNVTSTTTDV-----GFFG----KNGRGDGGHCFWGILCNMSRSIEKKAYDGLN 85
           ++DE+   VTST ++      G FG    ++ + DG H   GI  ++S+ IEK+A +G+N
Sbjct: 42  EDDEDGEYVTSTISNYCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMN 101

Query: 86  SERIMVRAILGFLMVMT 94
           S RI+VR ILGFLMVMT
Sbjct: 102 SVRIIVRTILGFLMVMT 118

BLAST of Moc10g06470 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0

Query: 26  DEDEEEVNVTSTTTDV---------GFFGKNGRGDG--GHCFWGILCNMSRSIEKKAYDG 85
           DED +E   TST ++          G+ G++ + DG  GH   GI C++S+ IEK+A +G
Sbjct: 44  DEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNG 103

Query: 86  LNSERIMVRAILGFLMVMTIKIITVNRSK 104
           ++S RI+VR ILGFLMVMT+KII+  RSK
Sbjct: 104 MSSVRIIVRTILGFLMVMTMKIISAQRSK 132

BLAST of Moc10g06470 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 26  DEDEEEVNVTSTTTDV-----GFFG----KNGRGDGGHCFWGILCNMSRSIEKKAYDGLN 85
           ++DE+   VTST ++      G FG    ++ + DG     GI  ++S+ IEK+A +G+N
Sbjct: 42  EDDEDGEYVTSTISNYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMN 101

Query: 86  SERIMVRAILGFLMVMTIKIITVNRSK 104
           S RI+VR ILGFLMVMT+KII+  RSK
Sbjct: 102 SVRIIVRTILGFLMVMTMKIISAQRSK 128

BLAST of Moc10g06470 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 26  DEDEEEVNVTSTTTDV-----GFFG----KNGRGDGGHCFWGILCNMSRSIEKKAYDGLN 85
           ++DE+   VTST ++      G FG    ++ + DG H   GI  ++S+ IEK+A +G+N
Sbjct: 42  EDDEDGEYVTSTISNYCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMN 101

Query: 86  SERIMVRAILGFLMVMT 94
           S RI+VR ILGFLMVMT
Sbjct: 102 SVRIIVRTILGFLMVMT 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7015383.11.8e-1351.16hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.11.8e-1351.16hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK16880.11.5e-0745.98Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
KAA0044707.11.4e-0545.45Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWE71.3e-0947.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU07.1e-0845.98Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS686.7e-0645.45Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g06470.1Moc10g06470.1mRNA