Moc10g04880 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g04880
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Tubby-like F-box protein 8
Location	chr10: 3401482 .. 3401847 (-)
RNA-Seq Expression	Moc10g04880
Synteny	Moc10g04880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGCTGTGGTGGTGACCACGGCGGCGATTTTCTGCTTCCTACTGCTTTCTGCGGCCACGGTGACCGTCTCCGCCGACGCTGCCGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAGAGACAGTAAGTAATTTCTTTCCATTTCCTTGCCCTAAATTTCTTCGATATCTCAATTTATCCCCAATTTTCGAAGCCCTAGTTTGTTTCTCTCAGCGTGTTTTAGGCATCTCCGATTCTGAAAACTTTTCAATTTGTTGTAATTTCTGAAATTAGTTCCGATTCTCTTGATATCTTCCGAGAAAGAGAGTCGGATGATCGTCTCAGCGATTGATGATTTGAAATCAATCAAAGTCTAA

mRNA sequence

ATGGAGAAAGCTGTGGTGGTGACCACGGCGGCGATTTTCTGCTTCCTACTGCTTTCTGCGGCCACGGTGACCGTCTCCGCCGACGCTGCCGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAGAGACATTCCGATTCTCTTGATATCTTCCGAGAAAGAGAGTCGGATGATCGTCTCAGCGATTGATGATTTGAAATCAATCAAAGTCTAA

Coding sequence (CDS)

ATGGAGAAAGCTGTGGTGGTGACCACGGCGGCGATTTTCTGCTTCCTACTGCTTTCTGCGGCCACGGTGACCGTCTCCGCCGACGCTGCCGACTGCATCGACGGCTGCTTCACCGCCTGTGTCCAGAGAGACATTCCGATTCTCTTGATATCTTCCGAGAAAGAGAGTCGGATGATCGTCTCAGCGATTGATGATTTGAAATCAATCAAAGTCTAA

Protein sequence

MEKAVVVTTAAIFCFLLLSAATVTVSADAADCIDGCFTACVQRDIPILLISSEKESRMIVSAIDDLKSIKV

Homology

[Close]

BLAST of Moc10g04880 vs. NCBI nr
Match: KAG6600340.1 (hypothetical protein SDJN03_05573, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030996.1 hypothetical protein SDJN02_05035, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 7.4e-08
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSAATVTVSADAADCIDGCFTACVQRDIPIL 49
          M+K+   TT AI CF+LLSAA  TVSADAADCIDGCFTACVQ+D  ++
Sbjct: 1  MKKSTAATTVAILCFILLSAAATTVSADAADCIDGCFTACVQKDTRLM 48

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BLAST of Moc10g04880 vs. NCBI nr
Match: XP_008456107.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSA-ATVTVSADAADCIDGCFTACVQRDIPIL 49
          MEK+     AAI C LLLSA A VTVSADAADCID CFTACVQ+D  ++
Sbjct: 1  MEKS-AAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVM 48

[Close]

BLAST of Moc10g04880 vs. NCBI nr
Match: KAA0039114.1 (Tubby-like F-box protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSA-ATVTVSADAADCIDGCFTACVQRD 45
          MEK+     AAI C LLLSA A VTVSADAADCID CFTACVQ+D
Sbjct: 1  MEKS-AAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKD 44

[Close]

BLAST of Moc10g04880 vs. NCBI nr
Match: XP_016901882.1 (PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSA-ATVTVSADAADCIDGCFTACVQRD 45
          MEK+     AAI C LLLSA A VTVSADAADCID CFTACVQ+D
Sbjct: 1  MEKS-AAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKD 44

[Close]

BLAST of Moc10g04880 vs. NCBI nr
Match: KAE8650509.1 (hypothetical protein Csa_010751 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.8e-04
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSAATVTVSADAADCIDGCFTACVQRD 45
          ME++ V    AI C LLLS A VTVSADAADCIDGCFTACVQ+D
Sbjct: 1  MERSAV----AILCLLLLS-AVVTVSADAADCIDGCFTACVQKD 39

[Close]

BLAST of Moc10g04880 vs. ExPASy TrEMBL
Match: A0A1S3C2J8 (uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.3e-05
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSA-ATVTVSADAADCIDGCFTACVQRDIPIL 49
          MEK+     AAI C LLLSA A VTVSADAADCID CFTACVQ+D  ++
Sbjct: 1  MEKS-AAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKDTRVM 48

[Close]

BLAST of Moc10g04880 vs. ExPASy TrEMBL
Match: A0A5A7T6K1 (Tubby-like F-box protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G002170 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSA-ATVTVSADAADCIDGCFTACVQRD 45
          MEK+     AAI C LLLSA A VTVSADAADCID CFTACVQ+D
Sbjct: 1  MEKS-AAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKD 44

[Close]

BLAST of Moc10g04880 vs. ExPASy TrEMBL
Match: A0A1S4E0W4 (uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496144 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSA-ATVTVSADAADCIDGCFTACVQRD 45
          MEK+     AAI C LLLSA A VTVSADAADCID CFTACVQ+D
Sbjct: 1  MEKS-AAAAAAILCLLLLSAEAVVTVSADAADCIDACFTACVQKD 44

[Close]

BLAST of Moc10g04880 vs. ExPASy TrEMBL
Match: A0A0A0LC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1  MEKAVVVTTAAIFCFLLLSAATVTVSADAADCIDGCFTACVQRD 45
          ME++ V    AI C LLLS A VTVSADAADCIDGCFTACVQ+D
Sbjct: 1  MERSAV----AILCLLLLS-AVVTVSADAADCIDGCFTACVQKD 39

The following BLAST results are available for this feature:

BLAST of Moc10g04880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600340.1	7.4e-08	68.75	hypothetical protein SDJN03_05573, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008456107.1	1.7e-04	67.35	PREDICTED: uncharacterized protein LOC103496144 isoform X2 [Cucumis melo]	[more]
KAA0039114.1	2.9e-04	73.33	Tubby-like F-box protein 8 [Cucumis melo var. makuwa]	[more]
XP_016901882.1	2.9e-04	73.33	PREDICTED: uncharacterized protein LOC103496144 isoform X1 [Cucumis melo]	[more]
KAE8650509.1	3.8e-04	72.73	hypothetical protein Csa_010751 [Cucumis sativus]	[more]

BLAST of Moc10g04880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g04880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2J8	8.3e-05	67.35	uncharacterized protein LOC103496144 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7T6K1	1.4e-04	73.33	Tubby-like F-box protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S4E0W4	1.4e-04	73.33	uncharacterized protein LOC103496144 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LC00	1.8e-04	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G209970 PE=4 SV=1	[more]

BLAST of Moc10g04880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g04880.1	Moc10g04880.1	mRNA