Moc10g03940 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g03940
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Phytosulfokine-beta
Location	chr10: 2752529 .. 2752886 (+)
RNA-Seq Expression	Moc10g03940
Synteny	Moc10g03940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAACTTCTGACCACCTTCTTCACATTTCTCTCCCTTTTCTTCTTCTTCTTCTTCTCCTCCTTGGCGATCACTGTTGCCGCCCGGCCCGTGCCCGACTTTCCGAACGCTTTTCCAGCCACGACTCGACATGGGGTATGTAAATTCATCAGAAATTTCGCAGCTTGATTTGGAAAACAAAAAAATAAGTAGTAAATTTTGTGCCTTTTTTGTTGTTGTGGTGAAGTTGAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGCTGTGGAGGGATTGGAGAAGAATATTGCTTGATGAGAAAAACTCTTGCAGCCCATCTTGATTATATCTACACAGATAACCAGGAGCCATGA

mRNA sequence

ATGGCTTCCAAACTTCTGACCACCTTCTTCACATTTCTCTCCCTTTTCTTCTTCTTCTTCTTCTCCTCCTTGGCGATCACTGTTGCCGCCCGGCCCGTGCCCGACTTTCCGAACGCTTTTCCAGCCACGACTCGACATGGGTTGAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGCTGTGGAGGGATTGGAGAAGAATATTGCTTGATGAGAAAAACTCTTGCAGCCCATCTTGATTATATCTACACAGATAACCAGGAGCCATGA

Coding sequence (CDS)

ATGGCTTCCAAACTTCTGACCACCTTCTTCACATTTCTCTCCCTTTTCTTCTTCTTCTTCTTCTCCTCCTTGGCGATCACTGTTGCCGCCCGGCCCGTGCCCGACTTTCCGAACGCTTTTCCAGCCACGACTCGACATGGGTTGAAGGTTGTGGATGATGTTTTGGAGGAGGAGAGCTGTGGAGGGATTGGAGAAGAATATTGCTTGATGAGAAAAACTCTTGCAGCCCATCTTGATTATATCTACACAGATAACCAGGAGCCATGA

Protein sequence

MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESCGGIGEEYCLMRKTLAAHLDYIYTDNQEP

Homology

[Close]

BLAST of Moc10g03940 vs. NCBI nr
Match: XP_022149343.1 (phytosulfokines-like [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 4.8e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC
Sbjct: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 89
          GGIGEEYCLMRKTLAAHLDYIYTDNQEP
Sbjct: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

[Close]

BLAST of Moc10g03940 vs. NCBI nr
Match: XP_022941982.1 (phytosulfokines-like [Cucurbita moschata])

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-22
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKL+T+ FTFL LFFF F S+   +V ARP+P   N  P TTR G KVVDDVLEEESC
Sbjct: 1  MASKLVTSIFTFLFLFFFLFSST--TSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 89
           GIGEE+CLMRKTLAAH DYIYTD Q P
Sbjct: 61 -GIGEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of Moc10g03940 vs. NCBI nr
Match: KAG7014931.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.0 bits (284), Expect = 6.6e-22
Identity = 60/86 (69.77%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKLLT+ FTFL LFF F  S+  I     PVP F NAFP T+R GLK  DD LEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQ 87
            IGEEYCLMRKTLAAH DYIYTD+Q
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQ 86

[Close]

BLAST of Moc10g03940 vs. NCBI nr
Match: XP_022922962.1 (phytosulfokines-like [Cucurbita moschata] >KAG6576906.1 Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 6.6e-22
Identity = 60/86 (69.77%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKLLT+ FTFL LFF F  S+  I     PVP F NAFP T+R GLK  DD LEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQ 87
            IGEEYCLMRKTLAAH DYIYTD+Q
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQ 86

[Close]

BLAST of Moc10g03940 vs. NCBI nr
Match: XP_004150263.1 (phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKL T+ + FL L F FF SS    +AARPVP F NAF  T+R G+ V DDVLEEESC
Sbjct: 1  MASKLFTSIYPFLFL-FLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 89
            IGEEYCLMRKTLAAH+DYIYTD Q+P
Sbjct: 61 DEIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of Moc10g03940 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-09
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          M+SK +T     ++L F     SL++  AARP+       PA +   + V+ + + +E+C
Sbjct: 1  MSSKAIT--LLLIALLF-----SLSLAQAARPLQ------PADSTKSVHVIPEKVHDEAC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 89
           G+GEE CLMR+TL AH+DYIYT +  P
Sbjct: 61 EGVGEEECLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of Moc10g03940 vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 12 FLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVD-DVLEEESCGGIGEEYCLM 71
          F ++F         +T AAR  P    A   +  + +K ++ D +EEESC GIGEE CL+
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTTTAL--SRENSVKEIEGDKVEEESCNGIGEEECLI 63

Query: 72 RKTLAAHLDYIYTDNQEP 89
          R++L  H DYIYT N +P
Sbjct: 64 RRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Moc10g03940 vs. ExPASy Swiss-Prot
Match: Q9SZG4 (Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-05
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 26 ITVAARPVPDFPNAF---PATTRHGLKVVDDVLEE---ESCGGIGEEYCLMRKTLAAHLD 84
          +T +ARP P +  +F   PA T   L++++  L E   ESC    +E CL+R+TL AHLD
Sbjct: 19 LTCSARPEPAYFASFTTSPADTL-SLEMIESKLHEVAGESCDKEDDEDCLVRRTLTAHLD 78

[Close]

BLAST of Moc10g03940 vs. ExPASy Swiss-Prot
Match: Q9FEB4 (Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-04
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 0


Query: 57 EESCGGIGEEYC-LMRKTLAAHLDYIYTDNQEP 89
          E  C G+GEE C L+R+TL AH DYIYT N  P
Sbjct: 45 EVICEGVGEEECFLIRRTLVAHTDYIYTQNHNP 77

[Close]

BLAST of Moc10g03940 vs. ExPASy TrEMBL
Match: A0A6J1D6J2 (Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111017778 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.3e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC
Sbjct: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 89
          GGIGEEYCLMRKTLAAHLDYIYTDNQEP
Sbjct: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 88

[Close]

BLAST of Moc10g03940 vs. ExPASy TrEMBL
Match: A0A6J1FNZ6 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 62/88 (70.45%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKL+T+ FTFL LFFF F S+   +V ARP+P   N  P TTR G KVVDDVLEEESC
Sbjct: 1  MASKLVTSIFTFLFLFFFLFSST--TSVFARPIPGSTNMSPGTTRDGFKVVDDVLEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 89
           GIGEE+CLMRKTLAAH DYIYTD Q P
Sbjct: 61 -GIGEEHCLMRKTLAAHADYIYTDKQRP 85

[Close]

BLAST of Moc10g03940 vs. ExPASy TrEMBL
Match: A0A6J1E4U5 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.2e-22
Identity = 60/86 (69.77%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKLLT+ FTFL LFF F  S+  I     PVP F NAFP T+R GLK  DD LEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQ 87
            IGEEYCLMRKTLAAH DYIYTD+Q
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQ 86

[Close]

BLAST of Moc10g03940 vs. ExPASy TrEMBL
Match: A0A0A0KY18 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.4e-22
Identity = 60/88 (68.18%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKL T+ + FL L F FF SS    +AARPVP F NAF  T+R G+ V DDVLEEESC
Sbjct: 1  MASKLFTSIYPFLFL-FLFFSSSSTTPIAARPVPGFSNAFLGTSRDGVVVEDDVLEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 89
            IGEEYCLMRKTLAAH+DYIYTD Q+P
Sbjct: 61 DEIGEEYCLMRKTLAAHVDYIYTDTQKP 87

[Close]

BLAST of Moc10g03940 vs. ExPASy TrEMBL
Match: A0A5A7TSX1 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00410 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MASKLLTTFFTFLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVDDVLEEESC 60
          MASKL T+ + FL L F FF SS    VAARPVP F NAF  T+R G  VVDDVLEEESC
Sbjct: 1  MASKLFTSIYPFLFL-FLFFSSSSTTPVAARPVPGFSNAFLGTSRDG--VVDDVLEEESC 60

Query: 61 GGIGEEYCLMRKTLAAHLDYIYTDNQEP 89
            IGE+YCLMRKT+AAH+DYIYTD+Q+P
Sbjct: 61 DEIGEDYCLMRKTVAAHVDYIYTDSQKP 85

[Close]

BLAST of Moc10g03940 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 12 FLSLFFFFFFSSLAITVAARPVPDFPNAFPATTRHGLKVVD-DVLEEESCGGIGEEYCLM 71
          F ++F         +T AAR  P    A   +  + +K ++ D +EEESC GIGEE CL+
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTTTAL--SRENSVKEIEGDKVEEESCNGIGEEECLI 63

Query: 72 RKTLAAHLDYIYTDNQEP 89
          R++L  H DYIYT N +P
Sbjct: 64 RRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Moc10g03940 vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 26 ITVAARPVPDFPNAF---PATTRHGLKVVDDVLEE---ESCGGIGEEYCLMRKTLAAHLD 84
          +T +ARP P +  +F   PA T   L++++  L E   ESC    +E CL+R+TL AHLD
Sbjct: 19 LTCSARPEPAYFASFTTSPADTL-SLEMIESKLHEVAGESCDKEDDEDCLVRRTLTAHLD 78

[Close]

BLAST of Moc10g03940 vs. TAIR 10
Match: AT5G65870.1 (phytosulfokine 5 precursor )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 0


Query: 57 EESCGGIGEEYC-LMRKTLAAHLDYIYTDNQEP 89
          E  C G+GEE C L+R+TL AH DYIYT N  P
Sbjct: 45 EVICEGVGEEECFLIRRTLVAHTDYIYTQNHNP 77

[Close]

BLAST of Moc10g03940 vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 19/39 (48.72%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 49 KVVDDVLEEESCGGIGEEYCLMRKTLAAHLDYIYTDNQE 88
          K+ D  + +E+CG   +E CLMR+TL AH DYIYT  ++
Sbjct: 48 KLDDMHMVDENCGA-DDEDCLMRRTLVAHTDYIYTQKKK 85

The following BLAST results are available for this feature:

BLAST of Moc10g03940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149343.1	4.8e-41	100.00	phytosulfokines-like [Momordica charantia]	[more]
XP_022941982.1	5.0e-22	70.45	phytosulfokines-like [Cucurbita moschata]	[more]
KAG7014931.1	6.6e-22	69.77	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022922962.1	6.6e-22	69.77	phytosulfokines-like [Cucurbita moschata] >KAG6576906.1 Phytosulfokines 3, parti...	[more]
XP_004150263.1	1.1e-21	68.18	phytosulfokines 3 [Cucumis sativus]	[more]

BLAST of Moc10g03940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	2.3e-09	39.77	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
Q9M2Y0	2.5e-08	41.03	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
Q9SZG4	2.0e-05	45.31	Putative phytosulfokines 4 OS=Arabidopsis thaliana OX=3702 GN=PSK4 PE=3 SV=1	[more]
Q9FEB4	2.9e-04	60.61	Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1	[more]

BLAST of Moc10g03940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6J2	2.3e-41	100.00	Phytosulfokine-beta OS=Momordica charantia OX=3673 GN=LOC111017778 PE=3 SV=1	[more]
A0A6J1FNZ6	2.4e-22	70.45	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1	[more]
A0A6J1E4U5	3.2e-22	69.77	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1	[more]
A0A0A0KY18	5.4e-22	68.18	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1	[more]
A0A5A7TSX1	1.0e-20	68.18	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G0...	[more]

BLAST of Moc10g03940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49780.1	1.8e-09	41.03	phytosulfokine 4 precursor	[more]
AT4G37720.1	1.4e-06	45.31	phytosulfokine 6 precursor	[more]
AT5G65870.1	2.0e-05	60.61	phytosulfokine 5 precursor	[more]
AT2G22860.1	1.7e-04	48.72	phytosulfokine 2 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 53..87 e-value: 1.7E-10 score: 41.8
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..88
None	No IPR available	PANTHER	PTHR33285:SF1	PHYTOSULFOKINES 3	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g03940.1	Moc10g03940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity