Moc10g03360 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g03360
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	classical arabinogalactan protein 1-like
Location	chr10: 2368607 .. 2368990 (+)
RNA-Seq Expression	Moc10g03360
Synteny	Moc10g03360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCAGAAGTTTTGCGGTAATGATTTTGATCGCATTGTTGATCGGCTCCACAATCGCGCAATCGCCGTCGGCATCGCCGTCATTGCCTCCGAGCAAATCGCCGTCGAAGGCTCCGTCGGTTTCTCCGTCTATTAAGTCGCCGAAATCTTCTCCGGCGGCGGCTCCTACTCCGTCCGGTCTGAAGTCTCCTCCATCTCCTCCGGCTGCTTCGCCTTCTACTTCTCCGTCGTCATCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCGGCTCCCTCCGGAAACGGCGCCGCTTCGCTCTCGTTCTCGGTCTTCGGATCTGTGGCTGTGGTGCTATACGCCGCCGTTTTGATGACCTGA

mRNA sequence

ATGGCAGCCAGAAGTTTTGCGGTAATGATTTTGATCGCATTGTTGATCGGCTCCACAATCGCGCAATCGCCGTCGGCATCGCCGTCATTGCCTCCGAGCAAATCGCCGTCGAAGGCTCCGTCGGTTTCTCCGTCTATTAAGTCGCCGAAATCTTCTCCGGCGGCGGCTCCTACTCCGTCCGGTCTGAAGTCTCCTCCATCTCCTCCGGCTGCTTCGCCTTCTACTTCTCCGTCGTCATCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCGGCTCCCTCCGGAAACGGCGCCGCTTCGCTCTCGTTCTCGGTCTTCGGATCTGTGGCTGTGGTGCTATACGCCGCCGTTTTGATGACCTGA

Coding sequence (CDS)

ATGGCAGCCAGAAGTTTTGCGGTAATGATTTTGATCGCATTGTTGATCGGCTCCACAATCGCGCAATCGCCGTCGGCATCGCCGTCATTGCCTCCGAGCAAATCGCCGTCGAAGGCTCCGTCGGTTTCTCCGTCTATTAAGTCGCCGAAATCTTCTCCGGCGGCGGCTCCTACTCCGTCCGGTCTGAAGTCTCCTCCATCTCCTCCGGCTGCTTCGCCTTCTACTTCTCCGTCGTCATCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCGGCTCCCTCCGGAAACGGCGCCGCTTCGCTCTCGTTCTCGGTCTTCGGATCTGTGGCTGTGGTGCTATACGCCGCCGTTTTGATGACCTGA

Protein sequence

MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVLYAAVLMT

Homology

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BLAST of Moc10g03360 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-33
Identity = 103/126 (81.75%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA RSF  MIL+ALLIGS IAQSP ASPS  PSKSPSKAPS SPS+KSPKSSPAAAPTPS
Sbjct: 1   MAIRSFVAMILVALLIGSAIAQSPGASPS--PSKSPSKAPSASPSVKSPKSSPAAAPTPS 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
            LKSPPSPP+ SP+TSPS   SPA+SPS ISSPPADAPAPSGNGAAS+SFSVFGSVAVVL
Sbjct: 61  SLKSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVL 120

Query: 121 YAAVLM 127
           Y  VL+
Sbjct: 121 YTVVLL 124

[Close]

BLAST of Moc10g03360 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-31
Identity = 97/126 (76.98%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA R F VM+++A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
            L+SPPSPPAASPS SPS SP    SPSSISSPPADAPAPSGN AAS+S S+FGSVA VL
Sbjct: 61  SLQSPPSPPAASPSLSPSPSP----SPSSISSPPADAPAPSGNAAASISLSMFGSVAAVL 120

Query: 121 YAAVLM 127
           YA VLM
Sbjct: 121 YAIVLM 122

[Close]

BLAST of Moc10g03360 vs. NCBI nr
Match: XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 6.5e-31
Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA R F VM+ +A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
            LKSPPSPPAASPS SPS       SPSSISSPPADAPAPSGN AAS+SFS+FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 120

Query: 121 YAAVLM 127
           YA VLM
Sbjct: 121 YAIVLM 120

[Close]

BLAST of Moc10g03360 vs. NCBI nr
Match: KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-30
Identity = 94/122 (77.05%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA R F VM+++A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
            LKSPPSPPAASPS SPS       SPSSISSPPADAPAPSGN AAS+SFS+FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 116

Query: 121 YA 123
           YA
Sbjct: 121 YA 116

[Close]

BLAST of Moc10g03360 vs. NCBI nr
Match: XP_022992086.1 (classical arabinogalactan protein 1-like [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 3.6e-29
Identity = 94/126 (74.60%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA R F VM+ +A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+
Sbjct: 1   MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
            LKSPPSPPAASPS SPS       SPSSISSPPADAPAPSGN AAS+S S+FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNSAASISLSMFGSVAAVL 120

Query: 121 YAAVLM 127
           +A V M
Sbjct: 121 FAIVFM 120

[Close]

BLAST of Moc10g03360 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-09
Identity = 64/132 (48.48%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 3   ARSFAVMILIALLIGSTIAQSPSASPS------LPPSKSPSK--APSVSPSIKSPKSSPA 62
           ++S   ++L ALLI S +AQSP+ +PS      + P+ SP K  AP+ +P + SP  SPA
Sbjct: 4   SKSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPA 63

Query: 63  AAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFG 122
           AA TP    SPPSPP A   T    + SPA SPS+IS  P +AP P+  GA S  F+ FG
Sbjct: 64  AALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFG 123

Query: 123 SVAVVLYAAVLM 127
           SVAV+L AAVL+
Sbjct: 124 SVAVMLTAAVLV 130

[Close]

BLAST of Moc10g03360 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.2e-31
Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA R F VM+ +A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
            LKSPPSPPAASPS SPS       SPSSISSPPADAPAPSGN AAS+SFS+FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 120

Query: 121 YAAVLM 127
           YA VLM
Sbjct: 121 YAIVLM 120

[Close]

BLAST of Moc10g03360 vs. ExPASy TrEMBL
Match: A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 94/126 (74.60%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA R F VM+ +A+LI S IAQSPSASPSL P+KSPSKAPS+SPS++SPKSSPAAAPTP+
Sbjct: 1   MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
            LKSPPSPPAASPS SPS       SPSSISSPPADAPAPSGN AAS+S S+FGSVA VL
Sbjct: 61  SLKSPPSPPAASPSLSPS------PSPSSISSPPADAPAPSGNSAASISLSMFGSVAAVL 120

Query: 121 YAAVLM 127
           +A V M
Sbjct: 121 FAIVFM 120

[Close]

BLAST of Moc10g03360 vs. ExPASy TrEMBL
Match: A0A5A7V5Q9 (Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00230 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.1e-29
Identity = 94/126 (74.60%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA RS   MIL++ LI S  AQS        P++SPSKAPSVSPS+KSPKSSPA APTPS
Sbjct: 1   MAIRSLVAMILVSFLIASAFAQS--------PTQSPSKAPSVSPSVKSPKSSPALAPTPS 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
            LKSPPSPP+ SPSTSPSSSPSPA+SPSSISSPPADAPAPSGNGAAS++FSV GS AV L
Sbjct: 61  SLKSPPSPPSTSPSTSPSSSPSPATSPSSISSPPADAPAPSGNGAASITFSVLGSAAVAL 118

Query: 121 YAAVLM 127
           YA VLM
Sbjct: 121 YAVVLM 118

[Close]

BLAST of Moc10g03360 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 95/126 (75.40%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA RSF VMIL+ALLIGS IAQSP+ASPSL P KSPSKAPS SPS+KSPKSSP AAPT  
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPT-- 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
                       P++SPS+SPSPA+SPSSISSPPADAPAPSG+GAAS+SFSVFGSVAVVL
Sbjct: 61  ------------PASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVL 111

Query: 121 YAAVLM 127
           YA VLM
Sbjct: 121 YAVVLM 111

[Close]

BLAST of Moc10g03360 vs. ExPASy TrEMBL
Match: A0A6J1J6X2 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483108 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.3e-28
Identity = 95/126 (75.40%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MAARSFAVMILIALLIGSTIAQSPSASPSLPPSKSPSKAPSVSPSIKSPKSSPAAAPTPS 60
           MA RSF VMIL+ALLIGS IAQSP+ASPSL P KSPSKAP  SPS+KSPKSSP AAPT  
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPLASPSVKSPKSSP-AAPT-- 60

Query: 61  GLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFGSVAVVL 120
                       P++SPS+SPSPA+SPSSISSPPADAPAPSGNGAAS+SFSVFGSVAVVL
Sbjct: 61  ------------PASSPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVL 111

Query: 121 YAAVLM 127
           YA VLM
Sbjct: 121 YAVVLM 111

[Close]

BLAST of Moc10g03360 vs. TAIR 10
Match: AT5G64310.1 (arabinogalactan protein 1 )

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-10
Identity = 64/132 (48.48%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 3   ARSFAVMILIALLIGSTIAQSPSASPS------LPPSKSPSK--APSVSPSIKSPKSSPA 62
           ++S   ++L ALLI S +AQSP+ +PS      + P+ SP K  AP+ +P + SP  SPA
Sbjct: 4   SKSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPA 63

Query: 63  AAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSFSVFG 122
           AA TP    SPPSPP A   T    + SPA SPS+IS  P +AP P+  GA S  F+ FG
Sbjct: 64  AALTPESSASPPSPPLADSPT----ADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFG 123

Query: 123 SVAVVLYAAVLM 127
           SVAV+L AAVL+
Sbjct: 124 SVAVMLTAAVLV 130

The following BLAST results are available for this feature:

BLAST of Moc10g03360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877310.1	2.4e-33	81.75	classical arabinogalactan protein 1 [Benincasa hispida]	[more]
XP_023542663.1	3.8e-31	76.98	classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942993.1	6.5e-31	76.98	classical arabinogalactan protein 1-like [Cucurbita moschata]	[more]
KAG7030900.1	3.2e-30	77.05	hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022992086.1	3.6e-29	74.60	classical arabinogalactan protein 1-like [Cucurbita maxima]	[more]

BLAST of Moc10g03360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCN5	3.3e-09	48.48	Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2...	[more]

BLAST of Moc10g03360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW49	3.2e-31	76.98	classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JSK4	1.7e-29	74.60	classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5A7V5Q9	5.1e-29	74.60	Classical arabinogalactan protein 1-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1E9Q3	2.5e-28	75.40	classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J6X2	3.3e-28	75.40	classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Moc10g03360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64310.1	2.3e-10	48.48	arabinogalactan protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..103
None	No IPR available	PANTHER	PTHR36321:SF2	CLASSICAL ARABINOGALACTAN PROTEIN 1	coord: 1..126
IPR044959	Classical arabinogalactan protein	PANTHER	PTHR36321	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g03360.1	Moc10g03360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane