Moc10g03340 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g03340
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr10: 2361551 .. 2361850 (+)
RNA-Seq ExpressionMoc10g03340
SyntenyMoc10g03340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCTCCGCCGTTGTCGCCTCCATGCTGGTGGCGCTGCTGCTCGTTTGCTCCGCTCATGCGCACGGCGATCATGGTTCCTCGCCCGCACACCCTCCATCCTCTGAGGCTCCTCCTCCGAAGGGCGGTAGTAGTACTCCTGCAGCTCCTCCGCCGCAGCTGACCCAACCGCCCCACCCGGTCGAAGGCCCCGCCGCTCCTCCTCCGACCGGGCACAACTCCGCCGTGATGAACAGCTTTTCATTCTCTTGGTCTGTGGCTGTTGGCATGGTGGCTGCTTCTTGGATGTTGTTTTGA

mRNA sequence

ATGGCTCCCTCCGCCGTTGTCGCCTCCATGCTGGTGGCGCTGCTGCTCGTTTGCTCCGCTCATGCGCACGGCGATCATGGTTCCTCGCCCGCACACCCTCCATCCTCTGAGGCTCCTCCTCCGAAGGGCGGTAGTAGTACTCCTGCAGCTCCTCCGCCGCAGCTGACCCAACCGCCCCACCCGGTCGAAGGCCCCGCCGCTCCTCCTCCGACCGGGCACAACTCCGCCGTGATGAACAGCTTTTCATTCTCTTGGTCTGTGGCTGTTGGCATGGTGGCTGCTTCTTGGATGTTGTTTTGA

Coding sequence (CDS)

ATGGCTCCCTCCGCCGTTGTCGCCTCCATGCTGGTGGCGCTGCTGCTCGTTTGCTCCGCTCATGCGCACGGCGATCATGGTTCCTCGCCCGCACACCCTCCATCCTCTGAGGCTCCTCCTCCGAAGGGCGGTAGTAGTACTCCTGCAGCTCCTCCGCCGCAGCTGACCCAACCGCCCCACCCGGTCGAAGGCCCCGCCGCTCCTCCTCCGACCGGGCACAACTCCGCCGTGATGAACAGCTTTTCATTCTCTTGGTCTGTGGCTGTTGGCATGGTGGCTGCTTCTTGGATGTTGTTTTGA

Protein sequence

MAPSAVVASMLVALLLVCSAHAHGDHGSSPAHPPSSEAPPPKGGSSTPAAPPPQLTQPPHPVEGPAAPPPTGHNSAVMNSFSFSWSVAVGMVAASWMLF
Homology
BLAST of Moc10g03340 vs. NCBI nr
Match: KAG7030901.1 (Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 41/97 (42.27%), Postives = 50/97 (51.55%), Query Frame = 0

Query: 3   PSAVVASMLVALLLVCSAHAHGDHGSSPAHPPSSEAPPPKGGSSTPAAPPPQLTQPPHPV 62
           PSAV++ +L  LLLV  A+ H  H     HPPSSE                         
Sbjct: 693 PSAVLSFVLAVLLLVYVANGHEGH----VHPPSSE------------------------- 752

Query: 63  EGPAAPPPTGHNSAVMNSFSFSWSVAVGMVAASWMLF 100
             P A PP G N+A+MNSFS+SWS+ + MVA SWMLF
Sbjct: 753 --PTASPPPGVNAAIMNSFSYSWSMVMAMVATSWMLF 758

BLAST of Moc10g03340 vs. NCBI nr
Match: KGN53725.1 (hypothetical protein Csa_014716 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 3  PSAVVASMLVALLLVCSAHAHGDHGSSPAHPPSSEAPPPKGGSSTPAAPPPQLTQPPHPV 62
          PSAV++ +LVALLL+C A+AH  H    AHPPSSE            APPPQ        
Sbjct: 5  PSAVLSVVLVALLLICVANAHEGH----AHPPSSE---------HHLAPPPQ-------- 64

Query: 63 EGPAAPPPTGHNSAVMNSFSFSWSVAVGMVAASWML 99
                    H++A++NS S+ WS+A+ MVAASW++
Sbjct: 65 ----------HSAAIINSLSYFWSMAMAMVAASWII 69

BLAST of Moc10g03340 vs. NCBI nr
Match: KAG6576850.1 (hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 40/97 (41.24%), Postives = 51/97 (52.58%), Query Frame = 0

Query: 3   PSAVVASMLVALLLVCSAHAHGDHGSSPAHPPSSEAPPPKGGSSTPAAPPPQLTQPPHPV 62
           PSAV+  +LVALLLV  A+AH  H     HPPSS+                     PH  
Sbjct: 5   PSAVLTVVLVALLLVSVAYAHEGH----VHPPSSD---------------------PH-- 64

Query: 63  EGPAAPPPTGHNSAVMNSFSFSWSVAVGMVAASWMLF 100
               APPP  + +  +NS S+ WS+A+ MVA+SWMLF
Sbjct: 65  ---VAPPPEHNAATAVNSLSYFWSMAIAMVASSWMLF 71

BLAST of Moc10g03340 vs. ExPASy TrEMBL
Match: A0A0A0KVS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-05
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 3  PSAVVASMLVALLLVCSAHAHGDHGSSPAHPPSSEAPPPKGGSSTPAAPPPQLTQPPHPV 62
          PSAV++ +LVALLL+C A+AH  H    AHPPSSE            APPPQ        
Sbjct: 5  PSAVLSVVLVALLLICVANAHEGH----AHPPSSE---------HHLAPPPQ-------- 64

Query: 63 EGPAAPPPTGHNSAVMNSFSFSWSVAVGMVAASWML 99
                    H++A++NS S+ WS+A+ MVAASW++
Sbjct: 65 ----------HSAAIINSLSYFWSMAMAMVAASWII 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7030901.11.7e-0542.27Bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Cucurbita ar... [more]
KGN53725.11.1e-0442.71hypothetical protein Csa_014716 [Cucumis sativus][more]
KAG6576850.14.1e-0441.24hypothetical protein SDJN03_24424, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVS35.2e-0542.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111600 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g03340.1Moc10g03340.1mRNA